|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr19 | genome | chr19:217643..220920 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO19G00570.1 vs.
Match: EWM23562.1 (bernardinelli-seip congenital lipodystrophy 2 protein variant 2 [Nannochloropsis gaditana]) HSP 1 Score: 382.9 bits (982), Expect = 1.900e-102 Identity = 258/458 (56.33%), Postives = 309/458 (67.47%), Query Frame = 0
Query: 175 PSSSPSTPSSPPSNTCASPTPPFFPPSYHHPFPHATVDFLSKHNQWHASPLTKTDTPLDRILRPDRVYVIDIEMTLPDSEPNAFLGNFMVSVDLFTRGNELLARSARPLILLYRSHWVRIIRSFFLAPFWALGLSQEAQVVRVTLFDRFRESGAHPMAWARVTLSSPQVHVYKATLSITAQLNWLQFVMSYYFYSTAFCAILLLATMLAAVVGFVYVWTELEGEEEEARQGGREDEEEDAWGNGGGLMAGGSGRRGGGRGRGREGG--GFGAGSHHYQQQNAANDETETLLGA-------EGGREGEMDRGEGRAMVQVA---EGGDGGGREEGEGGRGGDLSSPASMTTRSVFLVDDDGGQVEG---GGEGGGGVAGGGGREELQTISGSPTVVPMSSSQSVTLTGGGTQGGGDDPQPQQSQGVRRRGQHHHHHHYHRHHQHGQGDEDDDEEFLLGA 618
P ++P PS+ P SP+PP FPPS P+PHA +DFLS+HNQW SPLTKT+ PLDRILRP+RVYVID+E+T+PDSE NA LGNFM+ VDLFT+ ++LLA SARPLIL YRS W+R RS LAP ALG +QEAQV+RVT FDRFRES AHP+A ARV LSSP++H+YKA++SITAQLNWLQFVM +FY+TAF ILL++++ AAVVGF+YVW++LEGEE EAR+ G+E+E G + G RG GREG F G HHY + ANDE E LLGA EGGREG + G A VQVA G +G G EG GG GG+ P S T RSVFLVDD+GGQVEG G G GGV GG G E S PTVVP+SS+Q + GGG++ QSQ V R QHHH H H+ G EDDD++ LLGA
Sbjct: 86 PPANPLDPSTCPG---LSPSPPSFPPSSPSPYPHAHIDFLSQHNQWLPSPLTKTEPPLDRILRPERVYVIDVEVTVPDSETNAMLGNFMLFVDLFTKDDDLLAHSARPLILTYRSPWIRFFRSLLLAPVLALGFAQEAQVLRVTFFDRFRESLAHPLAHARVRLSSPRLHLYKASMSITAQLNWLQFVMYNWFYTTAFLIILLISSIEAAVVGFLYVWSQLEGEEAEAREEGKEEE-------AGWYIHPGDSLRGRDGLGGREGARQAFVPGYHHY---HVANDEAEVLLGAGEGQGGREGGREGGREGGRESAGVQVAGISRGEEGLGGSEGGGGEGGE---PVSSTNRSVFLVDDEGGQVEGVRAEGGGEGGVEGGRGGVEPLNGSRGPTVVPVSSNQRESA------GGGEEEGEVQSQSVPGRRQHHH----HPAHEEG---EDDDDDLLLGA 514
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO19G00570.1 ID=NO19G00570.1|Name=NO19G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=3061bp TAAGAAAATATGCCTGCTGTCTGTATTGAATGGGAAGGCATTTTAGACGT AAATTGAGTTAAACACGAGCTCGGTCTCCCTCCCTTCCAATTCCAAGAAG GCTACAACTACTCCGTTCCTGCTTGCTTCACTTTGGCGAGAGCGGCGATG AGCGTCATAGGGCCGCGACAATTTACTAGTCACAAAGCCACAAGACACAC AAGACAAGACACAAGCACACAGAACACACTGCACACAGCCTGTCCCTCAT ATGTCGACCTCCCCAGTGACCCTCGAAATCACTGCAATGAACTATACCTG CGTTGCCTTCGCTTCATTGCCCGGGCTTTGACGGCCCCAACCTCTTGCCG AGCCGGCCGCATCCCTTCCCCGTAGCTCCGGCCACACCTCACACGCCACA CAGGACTGAGCCGCTCAACAGGCAGGTAGCATGCTCCGCCTCTCTCTCGG CGTGATTTCCTTGATGACATTCGCTCCATGCCAACCTCATCTGCATGCAG CACATGCAGGGGAGCAGCAGCGCCACCACCACAACCACCTGCACGACCCA TTTGCGCATCTCTTGCTCTCCTTGTCATTAAGTGATACCTGCTGCCAGCA ACCTTGCCGTTATTCCCAATATCCAGTCAAGATGCTCAATCACCTTTATT ATCCCCAATCCCCCCAGCCGCGCCAAACAATACCATAGCCAACGCGCTCC TCTCCTCGCTTCTTCTATTTCCTGGCCTTCCTCGCACCAAGCCCAGGAAG CAGGGGACAAAAGAAGACTGGCCAACAACGCACCAGGCCTCGGCCTCTCG TCCTCATCCTCCCTCTCGCCTTCCATCCCTACCTACCCCCCCCGCCGGTC AACCCCCCTCCCCCTCCGCCACCTCCGTCGTTCGCATCGGCCTTACCTGG GTTTAGCATGCTGCGGCTTTTGGACGTCGGGTTGGAAATTGGTCGGGGGT TAGGATTTGTGCGCTCCACGTCTTTTGTGGAGGAAATGGAGACTCTGGTC TTCCGGTACACTTCCTCCCTCCTGGCCACCGCCCTGAAGCTGCTTCAGTA CCTCTTCCTCGGCCTCGCTCTTCTGACCTCCGCCACCGCTATCTATGCAG TTGCGTACCAACTGATCATGCCTACCAAATTACACGAAAAAGAGCTGTTT TTTGACTATTTCCCACCTGCTGTCAGCGCTGTTGGTACCGTTGAATATGG CAGAGGAGGGCCAGGTGGCTGGCCAGGGCCTTACCCTGCTGCGGCGGCGG CGGCGACGGCAGCGGCAAGTGCCGACGCCACTGGTGCTGGTGCTGGCTAT GGTAGCTCCTTCAATTCGCCTGAGAAGGCGAATGCGGCCGCCGCTCATTC GGTTACGATGATTACGGGGGAAAACCCTCCATCCCCTTCTGCGCCTCCTC CCCCTCAAGACGCCGTCGACTCCTCCTCCCCCTCCTCCTCTCCCTCCACA CCCTCCTCTCCACCCTCCAACACCTGCGCTTCCCCCACTCCTCCGTTCTT TCCTCCCTCCTACCATCACCCCTTCCCCCACGCCACTGTCGACTTCCTCT CCAAGCACAACCAATGGCATGCCTCCCCCCTCACCAAAACCGATACTCCC CTCGACCGTATCCTCCGCCCGGACCGTGTATACGTCATTGACATCGAGAT GACCCTTCCTGATTCGGAGCCCAACGCTTTTCTCGGGAATTTTATGGTCT CGGTCGATTTATTTACGCGGGGAAATGAGCTTCTGGCCCGGTCGGCTCGG CCTTTGATTCTCCTGTACAGGTCCCATTGGGTGCGGATAATACGGTCTTT CTTCCTGGCGCCTTTTTGGGCCTTGGGCCTGTCGCAGGAAGCGCAGGTGG TCCGGGTTACCCTCTTCGATCGCTTCCGAGAGTCAGGTGCTCATCCCATG GCCTGGGCGCGGGTCACACTCTCGTCCCCTCAAGTGCATGTGTACAAGGC GACATTGTCCATCACTGCCCAATTGAATTGGCTGCAATTTGTCATGTCGT ATTATTTTTATTCGACTGCGTTTTGCGCGATTCTTTTGCTCGCAACCATG CTTGCAGCGGTGGTGGGCTTTGTCTACGTGTGGACCGAACTGGAGGGGGA GGAGGAGGAGGCTCGGCAGGGAGGGAGGGAGGACGAAGAGGAGGATGCTT GGGGGAATGGAGGGGGTTTGATGGCGGGAGGAAGTGGTAGAAGAGGAGGA GGGAGGGGAAGAGGAAGAGAGGGAGGCGGCTTTGGTGCGGGAAGTCATCA CTACCAGCAGCAGAACGCGGCGAACGATGAGACGGAGACGTTGTTAGGGG CGGAAGGAGGGAGGGAGGGAGAGATGGACCGGGGGGAGGGGAGAGCGATG GTACAGGTAGCAGAGGGAGGAGATGGGGGAGGCAGGGAAGAAGGGGAGGG GGGAAGAGGAGGAGACTTGTCGTCGCCGGCGTCAATGACCACTAGGAGTG TGTTTTTGGTCGATGATGATGGAGGGCAGGTGGAGGGGGGGGGGGAGGGA GGGGGAGGAGTAGCTGGAGGAGGAGGGAGAGAAGAGCTGCAGACCATCTC TGGGAGTCCTACAGTTGTGCCCATGTCGTCAAGTCAGAGTGTGACGTTGA CGGGGGGAGGGACGCAGGGCGGGGGGGATGATCCGCAGCCGCAGCAAAGT CAGGGGGTGAGGAGGAGGGGGCAGCACCACCACCACCACCATTACCATCG CCATCATCAGCATGGACAAGGGGACGAGGACGACGATGAGGAATTTTTGT TGGGAGCGACGAGTAACTAGAGCGCCACGCATGCAGCAACAACCGCAGCA TGGGCAGAGGGAAGAACGTCGATACGGAGTATTTGCTGAGGGTGACTGGT TGGAAAAACAGATTCTTCAAGCGGCAGACTTTGATGAAAATGGAAGGAGG TAGTAGAAATGAGGAGAAGAAAGATTTTGATGTATGTAACAGCAATGAGA CAAGATGGCGAGAGATTACGCGACAAGGAATCAGTTAGCCAAGACAGGAA AAAAACGACGAACAGAAAACGAATAAGTTTGATTGCCATTTGAGGCGTGA CACTTAAAAAG back to topprotein sequence of NO19G00570.1 >NO19G00570.1-protein ID=NO19G00570.1-protein|Name=NO19G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp MLRLLDVGLEIGRGLGFVRSTSFVEEMETLVFRYTSSLLATALKLLQYLF LGLALLTSATAIYAVAYQLIMPTKLHEKELFFDYFPPAVSAVGTVEYGRG GPGGWPGPYPAAAAAATAAASADATGAGAGYGSSFNSPEKANAAAAHSVT MITGENPPSPSAPPPPQDAVDSSSPSSSPSTPSSPPSNTCASPTPPFFPP SYHHPFPHATVDFLSKHNQWHASPLTKTDTPLDRILRPDRVYVIDIEMTL PDSEPNAFLGNFMVSVDLFTRGNELLARSARPLILLYRSHWVRIIRSFFL APFWALGLSQEAQVVRVTLFDRFRESGAHPMAWARVTLSSPQVHVYKATL SITAQLNWLQFVMSYYFYSTAFCAILLLATMLAAVVGFVYVWTELEGEEE EARQGGREDEEEDAWGNGGGLMAGGSGRRGGGRGRGREGGGFGAGSHHYQ QQNAANDETETLLGAEGGREGEMDRGEGRAMVQVAEGGDGGGREEGEGGR GGDLSSPASMTTRSVFLVDDDGGQVEGGGEGGGGVAGGGGREELQTISGS PTVVPMSSSQSVTLTGGGTQGGGDDPQPQQSQGVRRRGQHHHHHHYHRHH QHGQGDEDDDEEFLLGATSN* back to topmRNA from alignment at chr19:217643..220920- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO19G00570.1 ID=NO19G00570.1|Name=NO19G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=3278bp|location=Sequence derived from alignment at chr19:217643..220920- (Nannochloropsis oceanica) TAAGAAAATATGCCTGCTGTCTGTATTGAATGGGAAGGCATTTTAGACGT
AAATTGAGTTAAACACGAGCTCGGTCTCCCTCCCTTCCAATTCCAAGAAG
GCTACAACTACTCCGTTCCTGCTTGCTTCACTTTGGCGAGAGCGGCGATG
AGCGTCATAGGGCCGCGACAATTTACTAGTCACAAAGCCACAAGACACAC
AAGACAAGACACAAGCACACAGAACACACTGCACACAGCCTGTCCCTCAT
ATGTCGACCTCCCCAGTGACCCTCGAAATCACTGCAATGAACTATACCTG
CGTTGCCTTCGCTTCATTGCCCGGGCTTTGACGGCCCCAACCTCTTGCCG
AGCCGGCCGCATCCCTTCCCCGTAGCTCCGGCCACACCTCACACGCCACA
CAGGACTGAGCCGCTCAACAGGCAGGTAGCATGCTCCGCCTCTCTCTCGG
CGTGATTTCCTTGATGACATTCGCTCCATGCCAACCTCATCTGCATGCAG
CACATGCAGGGGAGCAGCAGCGCCACCACCACAACCACCTGCACGACCCA
TTTGCGCATCTCTTGCTCTCCTTGTCATTAAGTGATACCTGCTGCCAGCA
ACCTTGCCGTTATTCCCAATATCCAGTCAAGATGCTCAATCACCTTTATT
ATCCCCAATCCCCCCAGCCGCGCCAAACAATACCATAGCCAACGCGCTCC
TCTCCTCGCTTCTTCTATTTCCTGGCCTTCCTCGCACCAAGCCCAGGAAG
CAGGGGACAAAAGAAGACTGGCCAACAACGCACCAGGCCTCGGCCTCTCG
TCCTCATCCTCCCTCTCGCCTTCCATCCCTACCTACCCCCCCCGCCGGTC
AACCCCCCTCCCCCTCCGCCACCTCCGTCGTTCGCATCGGCCTTACCTGG
GTTTAGCATGCTGCGGCTTTTGGACGTCGGGTTGGAAATTGGTCGGGGGT
TAGGATTTGTGCGCTCCACGTCTTTTGTGGAGGTAAGGGGGAAAGGGGGG
ATAGGCTAGATAGGGGAGGAGGGAGGATGGAGAGAAGTATGAAGAAAGGT
CGGACGCGTGATTATTTTATGCGGAGCGACGTTGGCTCATGATTAAATGT
GAGACTGAAGGGGGGTCTCATGCGAGCATGAGCAACAGCAAGCTGCCTTG
CAAATCATTTTCCGTATTCCCTCCTTCCCTTTCCTCTCCTCCCTCCCAGG
AAATGGAGACTCTGGTCTTCCGGTACACTTCCTCCCTCCTGGCCACCGCC
CTGAAGCTGCTTCAGTACCTCTTCCTCGGCCTCGCTCTTCTGACCTCCGC
CACCGCTATCTATGCAGTTGCGTACCAACTGATCATGCCTACCAAATTAC
ACGAAAAAGAGCTGTTTTTTGACTATTTCCCACCTGCTGTCAGCGCTGTT
GGTACCGTTGAATATGGCAGAGGAGGGCCAGGTGGCTGGCCAGGGCCTTA
CCCTGCTGCGGCGGCGGCGGCGACGGCAGCGGCAAGTGCCGACGCCACTG
GTGCTGGTGCTGGCTATGGTAGCTCCTTCAATTCGCCTGAGAAGGCGAAT
GCGGCCGCCGCTCATTCGGTTACGATGATTACGGGGGAAAACCCTCCATC
CCCTTCTGCGCCTCCTCCCCCTCAAGACGCCGTCGACTCCTCCTCCCCCT
CCTCCTCTCCCTCCACACCCTCCTCTCCACCCTCCAACACCTGCGCTTCC
CCCACTCCTCCGTTCTTTCCTCCCTCCTACCATCACCCCTTCCCCCACGC
CACTGTCGACTTCCTCTCCAAGCACAACCAATGGCATGCCTCCCCCCTCA
CCAAAACCGATACTCCCCTCGACCGTATCCTCCGCCCGGACCGTGTATAC
GTCATTGACATCGAGATGACCCTTCCTGATTCGGAGCCCAACGCTTTTCT
CGGGAATTTTATGGTCTCGGTCGATTTATTTACGCGGGGAAATGAGCTTC
TGGCCCGGTCGGCTCGGCCTTTGATTCTCCTGTACAGGTCCCATTGGGTG
CGGATAATACGGTCTTTCTTCCTGGCGCCTTTTTGGGCCTTGGGCCTGTC
GCAGGAAGCGCAGGTGGTCCGGGTTACCCTCTTCGATCGCTTCCGAGAGT
CAGGTGCTCATCCCATGGCCTGGGCGCGGGTCACACTCTCGTCCCCTCAA
GTGCATGTGTACAAGGCGACATTGTCCATCACTGCCCAATTGAATTGGCT
GCAATTTGTCATGTCGTATTATTTTTATTCGACTGCGTTTTGCGCGATTC
TTTTGCTCGCAACCATGCTTGCAGCGGTGGTGGGCTTTGTCTACGTGTGG
ACCGAACTGGAGGGGGAGGAGGAGGAGGCTCGGCAGGGAGGGAGGGAGGA
CGAAGAGGAGGATGCTTGGGGGAATGGAGGGGGTTTGATGGCGGGAGGAA
GTGGTAGAAGAGGAGGAGGGAGGGGAAGAGGAAGAGAGGGAGGCGGCTTT
GGTGCGGGAAGTCATCACTACCAGCAGCAGAACGCGGCGAACGATGAGAC
GGAGACGTTGTTAGGGGCGGAAGGAGGGAGGGAGGGAGAGATGGACCGGG
GGGAGGGGAGAGCGATGGTACAGGTAGCAGAGGGAGGAGATGGGGGAGGC
AGGGAAGAAGGGGAGGGGGGAAGAGGAGGAGACTTGTCGTCGCCGGCGTC
AATGACCACTAGGAGTGTGTTTTTGGTCGATGATGATGGAGGGCAGGTGG
AGGGGGGGGGGGAGGGAGGGGGAGGAGTAGCTGGAGGAGGAGGGAGAGAA
GAGCTGCAGACCATCTCTGGGAGTCCTACAGTTGTGCCCATGTCGTCAAG
TCAGAGTGTGACGTTGACGGGGGGAGGGACGCAGGGCGGGGGGGATGATC
CGCAGCCGCAGCAAAGTCAGGGGGTGAGGAGGAGGGGGCAGCACCACCAC
CACCACCATTACCATCGCCATCATCAGCATGGACAAGGGGACGAGGACGA
CGATGAGGAATTTTTGTTGGGAGCGACGAGTAACTAGAGCGCCACGCATG
CAGCAACAACCGCAGCATGGGCAGAGGGAAGAACGTCGATACGGAGTATT
TGCTGAGGGTGACTGGTTGGAAAAACAGATTCTTCAAGCGGCAGACTTTG
ATGAAAATGGAAGGAGGTAGTAGAAATGAGGAGAAGAAAGATTTTGATGT
ATGTAACAGCAATGAGACAAGATGGCGAGAGATTACGCGACAAGGAATCA
GTTAGCCAAGACAGGAAAAAAACGACGAACAGAAAACGAATAAGTTTGAT
TGCCATTTGAGGCGTGACACTTAAAAAG back to topCoding sequence (CDS) from alignment at chr19:217643..220920- >NO19G00570.1 ID=NO19G00570.1|Name=NO19G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr19:217643..220920- (Nannochloropsis oceanica) ATGCTGCGGCTTTTGGACGTCGGGTTGGAAATTGGTCGGGGGTTAGGATT TGTGCGCTCCACGTCTTTTGTGGAGGAAATGGAGACTCTGGTCTTCCGGT ACACTTCCTCCCTCCTGGCCACCGCCCTGAAGCTGCTTCAGTACCTCTTC CTCGGCCTCGCTCTTCTGACCTCCGCCACCGCTATCTATGCAGTTGCGTA CCAACTGATCATGCCTACCAAATTACACGAAAAAGAGCTGTTTTTTGACT ATTTCCCACCTGCTGTCAGCGCTGTTGGTACCGTTGAATATGGCAGAGGA GGGCCAGGTGGCTGGCCAGGGCCTTACCCTGCTGCGGCGGCGGCGGCGAC GGCAGCGGCAAGTGCCGACGCCACTGGTGCTGGTGCTGGCTATGGTAGCT CCTTCAATTCGCCTGAGAAGGCGAATGCGGCCGCCGCTCATTCGGTTACG ATGATTACGGGGGAAAACCCTCCATCCCCTTCTGCGCCTCCTCCCCCTCA AGACGCCGTCGACTCCTCCTCCCCCTCCTCCTCTCCCTCCACACCCTCCT CTCCACCCTCCAACACCTGCGCTTCCCCCACTCCTCCGTTCTTTCCTCCC TCCTACCATCACCCCTTCCCCCACGCCACTGTCGACTTCCTCTCCAAGCA CAACCAATGGCATGCCTCCCCCCTCACCAAAACCGATACTCCCCTCGACC GTATCCTCCGCCCGGACCGTGTATACGTCATTGACATCGAGATGACCCTT CCTGATTCGGAGCCCAACGCTTTTCTCGGGAATTTTATGGTCTCGGTCGA TTTATTTACGCGGGGAAATGAGCTTCTGGCCCGGTCGGCTCGGCCTTTGA TTCTCCTGTACAGGTCCCATTGGGTGCGGATAATACGGTCTTTCTTCCTG GCGCCTTTTTGGGCCTTGGGCCTGTCGCAGGAAGCGCAGGTGGTCCGGGT TACCCTCTTCGATCGCTTCCGAGAGTCAGGTGCTCATCCCATGGCCTGGG CGCGGGTCACACTCTCGTCCCCTCAAGTGCATGTGTACAAGGCGACATTG TCCATCACTGCCCAATTGAATTGGCTGCAATTTGTCATGTCGTATTATTT TTATTCGACTGCGTTTTGCGCGATTCTTTTGCTCGCAACCATGCTTGCAG CGGTGGTGGGCTTTGTCTACGTGTGGACCGAACTGGAGGGGGAGGAGGAG GAGGCTCGGCAGGGAGGGAGGGAGGACGAAGAGGAGGATGCTTGGGGGAA TGGAGGGGGTTTGATGGCGGGAGGAAGTGGTAGAAGAGGAGGAGGGAGGG GAAGAGGAAGAGAGGGAGGCGGCTTTGGTGCGGGAAGTCATCACTACCAG CAGCAGAACGCGGCGAACGATGAGACGGAGACGTTGTTAGGGGCGGAAGG AGGGAGGGAGGGAGAGATGGACCGGGGGGAGGGGAGAGCGATGGTACAGG TAGCAGAGGGAGGAGATGGGGGAGGCAGGGAAGAAGGGGAGGGGGGAAGA GGAGGAGACTTGTCGTCGCCGGCGTCAATGACCACTAGGAGTGTGTTTTT GGTCGATGATGATGGAGGGCAGGTGGAGGGGGGGGGGGAGGGAGGGGGAG GAGTAGCTGGAGGAGGAGGGAGAGAAGAGCTGCAGACCATCTCTGGGAGT CCTACAGTTGTGCCCATGTCGTCAAGTCAGAGTGTGACGTTGACGGGGGG AGGGACGCAGGGCGGGGGGGATGATCCGCAGCCGCAGCAAAGTCAGGGGG TGAGGAGGAGGGGGCAGCACCACCACCACCACCATTACCATCGCCATCAT CAGCATGGACAAGGGGACGAGGACGACGATGAGGAATTTTTGTTGGGAGC GACGAGTAACTAG back to top
|