Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr18 genome chr18:836911..839831 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G02570.2 vs.
Match: XP_008900750.1 (hypothetical protein PPTG_08422 [Phytophthora parasitica INRA-310]; ETI53510.1 hypothetical protein F443_03567 [Phytophthora parasitica P1569]; ETL46781.1 hypothetical protein L916_03407 [Phytophthora parasitica]; ETL99903.1 hypothetical protein L917_03331 [Phytophthora parasitica]; ETN13674.1 hypothetical protein PPTG_08422 [Phytophthora parasitica INRA-310]; ETO82176.1 hypothetical protein F444_03640 [Phytophthora parasitica P1976]; ETP51299.1 hypothetical protein F442_03547 [Phytophthora parasitica P10297])
HSP 1 Score: 74.7 bits (182), Expect = 3.700e-10
Identity = 43/142 (30.28%), Postives = 65/142 (45.77%), Query Frame = 0
Query: 63 QASSLSPSPKSPPRGRWKDGFCDWHKDCLHSCLLGSLLNCVLLGQVAQRMKFCMRFKEVTLVSLGLWTLSCVLYVALPKNVGPGGLANVAYSLFFLLVLCQLRGMVRSRDAIPGDRFWDCCASLWCSCCTLTQMARHVFHYQ 205
+ + + P G+W+ C C+ +CL+ + C+ + Q++ R LG+ T +C L + G A+V ++ + QLR M R R IPG D CAS WC CCTLTQ+A HV Y+
Sbjct: 29 EETKIDRDPSGILLGKWEAQLCGCCTHCVPNCLMATFCPCISVAQISAR--------------LGMTTYTCALLTFVLLFAFTCGFAHVVLFVW----IWQLRQMTRERFKIPGGCCEDYCASFWCPCCTLTQIATHVKSYK 152
The following BLAST results are available for this feature:
BLAST of NO18G02570.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 3.70e-10 / Id = 30.28 Sequence XP_008900750.1
Match Name E-value Identity Description
XP_008900750.1 3.700e-10 30.28 hypothetical protein PPTG_08422 [Phytophthora para... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO18G02570.2 ID=NO18G02570.2|Name=NO18G02570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2482bp CAGGGATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAA GAGGAGGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAA TGACGCCGAGGACGACAAGCTGTTATCACCCGAAAATCTCCTGCCTGCCG TGTTTGTGTCGGTCGGTCCCACTAGTAGCAACCCATTTGAGCAGGCCTCC TCCCTCTCTCCCTCCCCGAAAAGCCCACCGCGGGGTCGATGGAAGGACGG CTTTTGCGACTGGCACAAAGATTGCTTACATTCCTGCCTGCTAGGATCCC TCCTGAACTGTGTCCTTCTTGGCCAAGTGGCTCAGCGGATGAAATTCTGC ATGAGATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGACTCTCTC TTGCGTGCTCTACGTAGCTCTGCCCAAGAATGTCGGTCCCGGTGGCCTGG CGAATGTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAACTCCGC GGTATGGTCCGATCACGGGATGCGATTCCGGGTGACCGATTCTGGGATTG CTGCGCCAGTCTCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCC ATGTCTTCCATTACCAAGGTAATTGAGGAAGTATTCCGTTCGTCAAGATT GAAGGGATAAATGGCCAAATGGTCAAACAATTGAAAAAACTAAATTCACT CCTTCCTCCAACCCAGACAATCACGCAGACTGCTCATTAAGGCCAGGTAG TGACTCCTTTGTGACCGTGATCTAGTTCAGTAGCGGAGATGTGTCACATG CCCCTAATAAGACAAATAGAGAGGCGAACGTAATCGTCGTCATTGAACTG CAGTAAAGGAAAAAAATTCCTGGAAGAATATATCAAGCTAGGGGTGTCGG ATCCTATACTTCATTCACTTTGTACGTACTTTGCTTCTAGTCCAGTTCTT TGTTTCCATTCCCAGCGAAGTAGGTCGCCGATTTTCTAGACACTTTCCCC ACGAATGCCTTGAGATACAGGATGTCTGACAGTAGATCATCACCAGAAGA ATAGAACTTCCCTTGTTCCTCCTATTCTTTTCGTGGCTCTCATATGAACA CATACAAACCGCCCATACAACTACACAGTGTCTCTCTCTTGCACCATACC TTGCATTCCTGCACTTCCATGGTAAACTTAATATCAGCCACTCGGAATTC ATACCCGGACAGCCAAACTCATCAGCACGCACAGTACCAGTGAACGATCT CCCGGAACGTTTTTTCACGTCAAAATTTCTTACCTATCTCATTCTCTTTC TTAGAGTTTTTGATTCTTTGTGTTCTCTTCTTTCAAATGAGATTTTAGAA CGGCCCACAGACGACCGCATTTCTCTAGGTTTCTCTCGCGTCTTTTACAG GTCCTTAAGGTCAAACAGCCAAGGGTTGGGCACGCTGGACAGGCTGGGGT CCTTAAAAGAAAAGAGCTGAGAGAACGCGAAGAGTGCGGGAAAGTCCACG GACTGCGCCTGTAAGTAGTACTTGCTCTTCGAGATGTCCACGTCTTCCTT TGGCACCGTCCAGGCCACTTTGGAGAGGCCATTGTCGTCAAATGAATTGA TTGTCGCGATGACCGGTCCGTCTTTCTCGAGGCCATTCAGCAGCTTGATC TCCACTTTGCTACCCTCGGGAAAATTCTGTATGAAGATTTTGTACGTCGT GTTTGGCATCACCTGTCTGATGGGCTCGATGGACACATCGTCGGCCAATG TCATGGAAGGTGCCAAGACACTGGTCAATGATGGGGTATAGGCCGGGCAA CTTTTCAAGGAGGGGAAGCGCTGTTCGCCCTTCTCCGCCACGGTTACGCC ACAAGGCTGCATATCCTCCCTCTCGTCCCAATTGCTCATGATCGTCTCCC CCAAGTCGGTGGGGTCATTGTAGAATTCCATAAAGACATCCAGCAGATGC TGCTCCGCTTCCGGCTGATTAGATGTTACCTGAATGTCGTACTTGGTCCA GCCTTGGCAGTCGGGGTTCCAAGCCGGAGCCAGCACAGACTTAAGGTCCG AGATCGATACATCCTCAGCGTCTGGGGCAAAATTTGGTAGCTGGGCCGCG CCGTGAAGTCCAGCAGGACCCACAGTAATCTGATACTCTGTCCCCGTGGT AGCGTTGAGCGAGATGAAGCTCTTGATAACCTCCGTCACGTACTCCTTCG TCAAGCAGTCCTCCATGATAATGGCATCGTCCACATCAGCATCCTGATGC TTGCAGTAGACCACCAACTCGCTCCACAGTAACCAAGTGCTGGGCGGAAT CATGCTGCCTGCCTTATTTATCTGCGGCATGACCATATCTGCGTTAGGTG GTAGGATGTTTTTGGACGTGAGGCTCTGCGCTTGCACGTATACCTCCGCG GGGGTCTCGGCGTCGCAGTTGTCATACACTTCGCAGGAGCCCGGCCCACC AATATGATCCGATGACCGACCAGGTTTTACAC back to top protein sequence of NO18G02570.2
>NO18G02570.2-protein ID=NO18G02570.2-protein|Name=NO18G02570.2|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp MTTLQREERNGLRDEEEAGGPMYLLPPDSECNDAEDDKLLSPENLLPAVF VSVGPTSSNPFEQASSLSPSPKSPPRGRWKDGFCDWHKDCLHSCLLGSLL NCVLLGQVAQRMKFCMRFKEVTLVSLGLWTLSCVLYVALPKNVGPGGLAN VAYSLFFLLVLCQLRGMVRSRDAIPGDRFWDCCASLWCSCCTLTQMARHV FHYQGN* back to top mRNA from alignment at chr18:836911..839831-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G02570.2 ID=NO18G02570.2|Name=NO18G02570.2|organism=Nannochloropsis oceanica|type=mRNA|length=2921bp|location=Sequence derived from alignment at chr18:836911..839831- (Nannochloropsis oceanica) CAGGGATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAA
GAGGAGGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAA
TGACGCCGAGGACGACAAGCTG GTAAGTGCTCAATTTGCATACACAAACC
CCAAATTCCTCGCTTACGAACATCACCGACCCATCCATTTAAACATTAAG
TTATCACCCGAAAATCTCCTGCCTGCCGTGTTTGTGTCGGTCGGTCCCAC
TAGTAGCAACCCATTTGAGCAGGCCTCCTCCCTCTCTCCCTCCCCGAAAA
GCCCACCGCGGGGTCGATGGAAGGACGGCTTTTGCGACTGGCACAAAGAT
TGCTTACATTCCT GTACGTATAAGAATTTTTTTTACCATTTGTATGTCTT
ACACGTACGTCAAACTTCGCACTATTATCAATTTACAATTCTCTGTGACT
TCCCTTATGACACAGGCCTGCTAGGATCCCTCCTGAACTGTGTCCTTCTT
G GTGAGACCTCTATCGGCCCAGCGCTCATCTCACTCTCTCTTCAATCAGT
CGACTCACTGATCGAACCCTTATCCTAGGCCAAGTGGCTCAGCGGATGAA
ATTCTGCATGAGATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGA
CTCTCTCTTGCGTGCTCTACGTAGCTCTGCCCAA GTAAGTCCAATAATGG
GGGGGAAATAGAGATGGATAAAATTAGAAATAAATGACGACATCCAAACC
TTTATAATGCGCTGAATCCCGTCGGTATGCTAGGAATGTCGGTCCCGGTG
GCCTGGCGAATGTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAA
CTCCGCGGTATGGTCCGATCACGGGATGCGATTCCG GTGTGTATAGAAAC
AATGAACCGTCACCTTTCTTTCCTTCCTTGGACCTATGGACCTCACTCGT
GCCGCGTATATTTATGTAGGGTGACCGATTCTGGGATTGCTGCGCCAGTC
TCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCCATGTCTTCCAT
TACCAAGGTAATTGA GGAAGTATTCCGTTCGTCAAGATTGAAGGGATAAA
TGGCCAAATGGTCAAACAATTGAAAAAACTAAATTCACTCCTTCCTCCAA
CCCAGACAATCACGCAGACTGCTCATTAAGGCCAGGTAGTGACTCCTTTG
TGACCGTGATCTAGTTCAGTAGCGGAGATGTGTCACATGCCCCTAATAAG
ACAAATAGAGAGGCGAACGTAATCGTCGTCATTGAACTGCAGTAAAGGAA
AAAAATTCCTGGAAGAATATATCAAGCTAGGGGTGTCGGATCCTATACTT
CATTCACTTTGTACGTACTTTGCTTCTAGTCCAGTTCTTTGTTTCCATTC
CCAGCGAAGTAGGTCGCCGATTTTCTAGACACTTTCCCCACGAATGCCTT
GAGATACAGGATGTCTGACAGTAGATCATCACCAGAAGAATAGAACTTCC
CTTGTTCCTCCTATTCTTTTCGTGGCTCTCATATGAACACATACAAACCG
CCCATACAACTACACAGTGTCTCTCTCTTGCACCATACCTTGCATTCCTG
CACTTCCATGGTAAACTTAATATCAGCCACTCGGAATTCATACCCGGACA
GCCAAACTCATCAGCACGCACAGTACCAGTGAACGATCTCCCGGAACGTT
TTTTCACGTCAAAATTTCTTACCTATCTCATTCTCTTTCTTAGAGTTTTT
GATTCTTTGTGTTCTCTTCTTTCAAATGAGATTTTAGAACGGCCCACAGA
CGACCGCATTTCTCTAGGTTTCTCTCGCGTCTTTTACAGGTCCTTAAGGT
CAAACAGCCAAGGGTTGGGCACGCTGGACAGGCTGGGGTCCTTAAAAGAA
AAGAGCTGAGAGAACGCGAAGAGTGCGGGAAAGTCCACGGACTGCGCCTG
TAAGTAGTACTTGCTCTTCGAGATGTCCACGTCTTCCTTTGGCACCGTCC
AGGCCACTTTGGAGAGGCCATTGTCGTCAAATGAATTGATTGTCGCGATG
ACCGGTCCGTCTTTCTCGAGGCCATTCAGCAGCTTGATCTCCACTTTGCT
ACCCTCGGGAAAATTCTGTATGAAGATTTTGTACGTCGTGTTTGGCATCA
CCTGTCTGATGGGCTCGATGGACACATCGTCGGCCAATGTCATGGAAGGT
GCCAAGACACTGGTCAATGATGGGGTATAGGCCGGGCAACTTTTCAAGGA
GGGGAAGCGCTGTTCGCCCTTCTCCGCCACGGTTACGCCACAAGGCTGCA
TATCCTCCCTCTCGTCCCAATTGCTCATGATCGTCTCCCCCAAGTCGGTG
GGGTCATTGTAGAATTCCATAAAGACATCCAGCAGATGCTGCTCCGCTTC
CGGCTGATTAGATGTTACCTGAATGTCGTACTTGGTCCAGCCTTGGCAGT
CGGGGTTCCAAGCCGGAGCCAGCACAGACTTAAGGTCCGAGATCGATACA
TCCTCAGCGTCTGGGGCAAAATTTGGTAGCTGGGCCGCGCCGTGAAGTCC
AGCAGGACCCACAGTAATCTGATACTCTGTCCCCGTGGTAGCGTTGAGCG
AGATGAAGCTCTTGATAACCTCCGTCACGTACTCCTTCGTCAAGCAGTCC
TCCATGATAATGGCATCGTCCACATCAGCATCCTGATGCTTGCAGTAGAC
CACCAACTCGCTCCACAGTAACCAAGTGCTGGGCGGAATCATGCTGCCTG
CCTTATTTATCTGCGGCATGACCATATCTGCGTTAGGTGGTAGGATGTTT
TTGGACGTGAGGCTCTGCGCTTGCACGTATACCTCCGCGGGGGTCTCGGC
GTCGCAGTTGTCATACACTTCGCAGGAGCCCGGCCCACCAATATGATCCG
ATGACCGACCAGGTTTTACAC back to top Coding sequence (CDS) from alignment at chr18:836911..839831-
>NO18G02570.2 ID=NO18G02570.2|Name=NO18G02570.2|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at chr18:836911..839831- (Nannochloropsis oceanica) ATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAAGAGGA GGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAATGACG CCGAGGACGACAAGCTGTTATCACCCGAAAATCTCCTGCCTGCCGTGTTT GTGTCGGTCGGTCCCACTAGTAGCAACCCATTTGAGCAGGCCTCCTCCCT CTCTCCCTCCCCGAAAAGCCCACCGCGGGGTCGATGGAAGGACGGCTTTT GCGACTGGCACAAAGATTGCTTACATTCCTGCCTGCTAGGATCCCTCCTG AACTGTGTCCTTCTTGGCCAAGTGGCTCAGCGGATGAAATTCTGCATGAG ATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGACTCTCTCTTGCG TGCTCTACGTAGCTCTGCCCAAGAATGTCGGTCCCGGTGGCCTGGCGAAT GTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAACTCCGCGGTAT GGTCCGATCACGGGATGCGATTCCGGGTGACCGATTCTGGGATTGCTGCG CCAGTCTCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCCATGTC TTCCATTACCAAGGTAATTGA back to top