NO18G02570.1, NO18G02570.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G02570.1
Unique Name	NO18G02570.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2384
Alignment location	chr18:836911..839831 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:836911..839831 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO18G02570.1 vs.
Match: XP_008900750.1 (hypothetical protein PPTG_08422 [Phytophthora parasitica INRA-310]; ETI53510.1 hypothetical protein F443_03567 [Phytophthora parasitica P1569]; ETL46781.1 hypothetical protein L916_03407 [Phytophthora parasitica]; ETL99903.1 hypothetical protein L917_03331 [Phytophthora parasitica]; ETN13674.1 hypothetical protein PPTG_08422 [Phytophthora parasitica INRA-310]; ETO82176.1 hypothetical protein F444_03640 [Phytophthora parasitica P1976]; ETP51299.1 hypothetical protein F442_03547 [Phytophthora parasitica P10297])

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-10
Identity = 44/147 (29.93%), Postives = 66/147 (44.90%), Query Frame = 0

Query:   63 QASSLSPSPKSPPRGRWKDGFCDWHKDCLHSCLLGSLLNCVLLGQVAQRMKFCMRFKEVTLVSLGLWTLSCVLYVALPKNVGPGGLANVAYSLFFLLVLCQLRGMVRSRDAIPGDRFWDCCASLWCSCCTLTQMARHVFHYQDNHAD 210
            + + +   P     G+W+   C     C+ +CL+ +   C+ + Q++ R              LG+ T +C L   +       G A+V   ++    + QLR M R R  IPG    D CAS WC CCTLTQ+A HV  Y+    D
Sbjct:   29 EETKIDRDPSGILLGKWEAQLCGCCTHCVPNCLMATFCPCISVAQISAR--------------LGMTTYTCALLTFVLLFAFTCGFAHVVLFVW----IWQLRQMTRERFKIPGGCCEDYCASFWCPCCTLTQIATHVKSYKPGSCD 157

The following BLAST results are available for this feature:

BLAST of NO18G02570.1 vs.

BLAST of NO18G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_008900750.1	1.800e-10	29.93	hypothetical protein PPTG_08422 [Phytophthora para...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G02570	NO18G02570	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02570.1	NO18G02570.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G02570.1.cds1	NO18G02570.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02570.1.cds2	NO18G02570.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02570.1.cds3	NO18G02570.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02570.1.cds4	NO18G02570.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02570.1.cds5	NO18G02570.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02570.1.cds6	NO18G02570.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G02570.1.cds7	NO18G02570.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:836911..839831-
coding sequence from alignment at chr18:836911..839831-

mRNA sequence

>NO18G02570.1 ID=NO18G02570.1|Name=NO18G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp
CAGGGATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAA
GAGGAGGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAA
TGACGCCGAGGACGACAAGCTGTTATCACCCGAAAATCTCCTGCCTGCCG
TGTTTGTGTCGGTCGGTCCCACTAGTAGCAACCCATTTGAGCAGGCCTCC
TCCCTCTCTCCCTCCCCGAAAAGCCCACCGCGGGGTCGATGGAAGGACGG
CTTTTGCGACTGGCACAAAGATTGCTTACATTCCTGCCTGCTAGGATCCC
TCCTGAACTGTGTCCTTCTTGGCCAAGTGGCTCAGCGGATGAAATTCTGC
ATGAGATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGACTCTCTC
TTGCGTGCTCTACGTAGCTCTGCCCAAGAATGTCGGTCCCGGTGGCCTGG
CGAATGTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAACTCCGC
GGTATGGTCCGATCACGGGATGCGATTCCGGGTGACCGATTCTGGGATTG
CTGCGCCAGTCTCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCC
ATGTCTTCCATTACCAAGACAATCACGCAGACTGCTCATTAAGGCCAGGT
AGTGACTCCTTTGTGACCGTGATCTAGTTCAGTAGCGGAGATGTGTCACA
TGCCCCTAATAAGACAAATAGAGAGGCGAACGTAATCGTCGTCATTGAAC
TGCAGTAAAGGAAAAAAATTCCTGGAAGAATATATCAAGCTAGGGGTGTC
GGATCCTATACTTCATTCACTTTGTACGTACTTTGCTTCTAGTCCAGTTC
TTTGTTTCCATTCCCAGCGAAGTAGGTCGCCGATTTTCTAGACACTTTCC
CCACGAATGCCTTGAGATACAGGATGTCTGACAGTAGATCATCACCAGAA
GAATAGAACTTCCCTTGTTCCTCCTATTCTTTTCGTGGCTCTCATATGAA
CACATACAAACCGCCCATACAACTACACAGTGTCTCTCTCTTGCACCATA
CCTTGCATTCCTGCACTTCCATGGTAAACTTAATATCAGCCACTCGGAAT
TCATACCCGGACAGCCAAACTCATCAGCACGCACAGTACCAGTGAACGAT
CTCCCGGAACGTTTTTTCACGTCAAAATTTCTTACCTATCTCATTCTCTT
TCTTAGAGTTTTTGATTCTTTGTGTTCTCTTCTTTCAAATGAGATTTTAG
AACGGCCCACAGACGACCGCATTTCTCTAGGTTTCTCTCGCGTCTTTTAC
AGGTCCTTAAGGTCAAACAGCCAAGGGTTGGGCACGCTGGACAGGCTGGG
GTCCTTAAAAGAAAAGAGCTGAGAGAACGCGAAGAGTGCGGGAAAGTCCA
CGGACTGCGCCTGTAAGTAGTACTTGCTCTTCGAGATGTCCACGTCTTCC
TTTGGCACCGTCCAGGCCACTTTGGAGAGGCCATTGTCGTCAAATGAATT
GATTGTCGCGATGACCGGTCCGTCTTTCTCGAGGCCATTCAGCAGCTTGA
TCTCCACTTTGCTACCCTCGGGAAAATTCTGTATGAAGATTTTGTACGTC
GTGTTTGGCATCACCTGTCTGATGGGCTCGATGGACACATCGTCGGCCAA
TGTCATGGAAGGTGCCAAGACACTGGTCAATGATGGGGTATAGGCCGGGC
AACTTTTCAAGGAGGGGAAGCGCTGTTCGCCCTTCTCCGCCACGGTTACG
CCACAAGGCTGCATATCCTCCCTCTCGTCCCAATTGCTCATGATCGTCTC
CCCCAAGTCGGTGGGGTCATTGTAGAATTCCATAAAGACATCCAGCAGAT
GCTGCTCCGCTTCCGGCTGATTAGATGTTACCTGAATGTCGTACTTGGTC
CAGCCTTGGCAGTCGGGGTTCCAAGCCGGAGCCAGCACAGACTTAAGGTC
CGAGATCGATACATCCTCAGCGTCTGGGGCAAAATTTGGTAGCTGGGCCG
CGCCGTGAAGTCCAGCAGGACCCACAGTAATCTGATACTCTGTCCCCGTG
GTAGCGTTGAGCGAGATGAAGCTCTTGATAACCTCCGTCACGTACTCCTT
CGTCAAGCAGTCCTCCATGATAATGGCATCGTCCACATCAGCATCCTGAT
GCTTGCAGTAGACCACCAACTCGCTCCACAGTAACCAAGTGCTGGGCGGA
ATCATGCTGCCTGCCTTATTTATCTGCGGCATGACCATATCTGCGTTAGG
TGGTAGGATGTTTTTGGACGTGAGGCTCTGCGCTTGCACGTATACCTCCG
CGGGGGTCTCGGCGTCGCAGTTGTCATACACTTCGCAGGAGCCCGGCCCA
CCAATATGATCCGATGACCGACCAGGTTTTACAC

protein sequence of NO18G02570.1

>NO18G02570.1-protein ID=NO18G02570.1-protein|Name=NO18G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MTTLQREERNGLRDEEEAGGPMYLLPPDSECNDAEDDKLLSPENLLPAVF
VSVGPTSSNPFEQASSLSPSPKSPPRGRWKDGFCDWHKDCLHSCLLGSLL
NCVLLGQVAQRMKFCMRFKEVTLVSLGLWTLSCVLYVALPKNVGPGGLAN
VAYSLFFLLVLCQLRGMVRSRDAIPGDRFWDCCASLWCSCCTLTQMARHV
FHYQDNHADCSLRPGSDSFVTVI*

mRNA from alignment at chr18:836911..839831-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G02570.1 ID=NO18G02570.1|Name=NO18G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2921bp|location=Sequence derived from alignment at chr18:836911..839831- (Nannochloropsis oceanica)
CAGGGATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAA
GAGGAGGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAA
TGACGCCGAGGACGACAAGCTGGTAAGTGCTCAATTTGCATACACAAACC
CCAAATTCCTCGCTTACGAACATCACCGACCCATCCATTTAAACATTAAG
TTATCACCCGAAAATCTCCTGCCTGCCGTGTTTGTGTCGGTCGGTCCCAC
TAGTAGCAACCCATTTGAGCAGGCCTCCTCCCTCTCTCCCTCCCCGAAAA
GCCCACCGCGGGGTCGATGGAAGGACGGCTTTTGCGACTGGCACAAAGAT
TGCTTACATTCCTGTACGTATAAGAATTTTTTTTACCATTTGTATGTCTT
ACACGTACGTCAAACTTCGCACTATTATCAATTTACAATTCTCTGTGACT
TCCCTTATGACACAGGCCTGCTAGGATCCCTCCTGAACTGTGTCCTTCTT
GGTGAGACCTCTATCGGCCCAGCGCTCATCTCACTCTCTCTTCAATCAGT
CGACTCACTGATCGAACCCTTATCCTAGGCCAAGTGGCTCAGCGGATGAA
ATTCTGCATGAGATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGA
CTCTCTCTTGCGTGCTCTACGTAGCTCTGCCCAAGTAAGTCCAATAATGG
GGGGGAAATAGAGATGGATAAAATTAGAAATAAATGACGACATCCAAACC
TTTATAATGCGCTGAATCCCGTCGGTATGCTAGGAATGTCGGTCCCGGTG
GCCTGGCGAATGTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAA
CTCCGCGGTATGGTCCGATCACGGGATGCGATTCCGGTGTGTATAGAAAC
AATGAACCGTCACCTTTCTTTCCTTCCTTGGACCTATGGACCTCACTCGT
GCCGCGTATATTTATGTAGGGTGACCGATTCTGGGATTGCTGCGCCAGTC
TCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCCATGTCTTCCAT
TACCAAGGTAATTGAGGAAGTATTCCGTTCGTCAAGATTGAAGGGATAAA
TGGCCAAATGGTCAAACAATTGAAAAAACTAAATTCACTCCTTCCTCCAA
CCCAGACAATCACGCAGACTGCTCATTAAGGCCAGGTAGTGACTCCTTTG
TGACCGTGATCTAGTTCAGTAGCGGAGATGTGTCACATGCCCCTAATAAG
ACAAATAGAGAGGCGAACGTAATCGTCGTCATTGAACTGCAGTAAAGGAA
AAAAATTCCTGGAAGAATATATCAAGCTAGGGGTGTCGGATCCTATACTT
CATTCACTTTGTACGTACTTTGCTTCTAGTCCAGTTCTTTGTTTCCATTC
CCAGCGAAGTAGGTCGCCGATTTTCTAGACACTTTCCCCACGAATGCCTT
GAGATACAGGATGTCTGACAGTAGATCATCACCAGAAGAATAGAACTTCC
CTTGTTCCTCCTATTCTTTTCGTGGCTCTCATATGAACACATACAAACCG
CCCATACAACTACACAGTGTCTCTCTCTTGCACCATACCTTGCATTCCTG
CACTTCCATGGTAAACTTAATATCAGCCACTCGGAATTCATACCCGGACA
GCCAAACTCATCAGCACGCACAGTACCAGTGAACGATCTCCCGGAACGTT
TTTTCACGTCAAAATTTCTTACCTATCTCATTCTCTTTCTTAGAGTTTTT
GATTCTTTGTGTTCTCTTCTTTCAAATGAGATTTTAGAACGGCCCACAGA
CGACCGCATTTCTCTAGGTTTCTCTCGCGTCTTTTACAGGTCCTTAAGGT
CAAACAGCCAAGGGTTGGGCACGCTGGACAGGCTGGGGTCCTTAAAAGAA
AAGAGCTGAGAGAACGCGAAGAGTGCGGGAAAGTCCACGGACTGCGCCTG
TAAGTAGTACTTGCTCTTCGAGATGTCCACGTCTTCCTTTGGCACCGTCC
AGGCCACTTTGGAGAGGCCATTGTCGTCAAATGAATTGATTGTCGCGATG
ACCGGTCCGTCTTTCTCGAGGCCATTCAGCAGCTTGATCTCCACTTTGCT
ACCCTCGGGAAAATTCTGTATGAAGATTTTGTACGTCGTGTTTGGCATCA
CCTGTCTGATGGGCTCGATGGACACATCGTCGGCCAATGTCATGGAAGGT
GCCAAGACACTGGTCAATGATGGGGTATAGGCCGGGCAACTTTTCAAGGA
GGGGAAGCGCTGTTCGCCCTTCTCCGCCACGGTTACGCCACAAGGCTGCA
TATCCTCCCTCTCGTCCCAATTGCTCATGATCGTCTCCCCCAAGTCGGTG
GGGTCATTGTAGAATTCCATAAAGACATCCAGCAGATGCTGCTCCGCTTC
CGGCTGATTAGATGTTACCTGAATGTCGTACTTGGTCCAGCCTTGGCAGT
CGGGGTTCCAAGCCGGAGCCAGCACAGACTTAAGGTCCGAGATCGATACA
TCCTCAGCGTCTGGGGCAAAATTTGGTAGCTGGGCCGCGCCGTGAAGTCC
AGCAGGACCCACAGTAATCTGATACTCTGTCCCCGTGGTAGCGTTGAGCG
AGATGAAGCTCTTGATAACCTCCGTCACGTACTCCTTCGTCAAGCAGTCC
TCCATGATAATGGCATCGTCCACATCAGCATCCTGATGCTTGCAGTAGAC
CACCAACTCGCTCCACAGTAACCAAGTGCTGGGCGGAATCATGCTGCCTG
CCTTATTTATCTGCGGCATGACCATATCTGCGTTAGGTGGTAGGATGTTT
TTGGACGTGAGGCTCTGCGCTTGCACGTATACCTCCGCGGGGGTCTCGGC
GTCGCAGTTGTCATACACTTCGCAGGAGCCCGGCCCACCAATATGATCCG
ATGACCGACCAGGTTTTACAC

Coding sequence (CDS) from alignment at chr18:836911..839831-

>NO18G02570.1 ID=NO18G02570.1|Name=NO18G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at chr18:836911..839831- (Nannochloropsis oceanica)
ATGACGACCTTACAGAGAGAGGAACGAAATGGTCTGAGGGACGAAGAGGA
GGCTGGCGGGCCGATGTATCTGTTGCCACCTGATTCCGAGTGCAATGACG
CCGAGGACGACAAGCTGTTATCACCCGAAAATCTCCTGCCTGCCGTGTTT
GTGTCGGTCGGTCCCACTAGTAGCAACCCATTTGAGCAGGCCTCCTCCCT
CTCTCCCTCCCCGAAAAGCCCACCGCGGGGTCGATGGAAGGACGGCTTTT
GCGACTGGCACAAAGATTGCTTACATTCCTGCCTGCTAGGATCCCTCCTG
AACTGTGTCCTTCTTGGCCAAGTGGCTCAGCGGATGAAATTCTGCATGAG
ATTCAAAGAGGTGACGCTTGTCAGCTTAGGCTTGTGGACTCTCTCTTGCG
TGCTCTACGTAGCTCTGCCCAAGAATGTCGGTCCCGGTGGCCTGGCGAAT
GTGGCTTATTCCCTCTTCTTCCTCCTCGTCCTATGCCAACTCCGCGGTAT
GGTCCGATCACGGGATGCGATTCCGGGTGACCGATTCTGGGATTGCTGCG
CCAGTCTCTGGTGCTCCTGCTGCACGCTCACGCAGATGGCTCGCCATGTC
TTCCATTACCAAGACAATCACGCAGACTGCTCATTAAGGCCAGGTAGTGA
CTCCTTTGTGACCGTGATCTAG

Synonyms

Publications