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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:532880..535941 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01670.1 vs.
Match: EWM23347.1 (hypothetical protein Naga_100057g32 [Nannochloropsis gaditana]) HSP 1 Score: 311.2 bits (796), Expect = 7.600e-81 Identity = 231/591 (39.09%), Postives = 337/591 (57.02%), Query Frame = 0
Query: 20 CSLVLMFLAAAPTVVRGDAAAS-----------------NDPAELIVPTGHGTHFDKIDELQNEIQQKVAALFTAEKAILSLQDQLNAASTQLQANSVALTASDSATKALTSQINDLRHKLHSAEA--------------TAEAAAKKETAALTERLQKAEKEEKEGREEVRKMREKIEGLKNALVSKEKKEGKVWEEEKNKLQARISTLIEEKEAAAA-----------TVEVEKVKAAAAVSKAKEEAAAAVVQEQKKAAAAVGKSQQELTHTLSAEKKKAEAELKRMQTEAAGLKARLNVLETQVANADRKLAEAREGWNEKMTKKEKEVGELQARLKLAMETKYSGRVLWEDFTAWTRGVGMMAKDKTQKGVAWAVTEGRKQGKAAQVALAPLVATAT----EKARELQGKASNVCMPLVETHVLPPYRQHVHPLWEKVREAAIPVWRQKVQPGLAQGAAWAAKCARKGVAVAREESRKGRRATVVWVGRQEWSKGRDADRLVAGALYVLTATVLFLLRSLIRGFLVGLGELTVWLVRLPFVVIFWIFFWPFVVLGWGKKREGGEADAAAGGGVAVQRGGEGGKRGG 565
C L L A P +V DAAA+ +DPA LIVPTGH T +DK+DEL N +QQKVAAL AEKAI SL++QLN AS QL+ + +L+ASD T LT ++ +L HKL +AEA TA AAAKKETAA R +KAE E +++ + + L+ ++ + + EG+ W EEK +++ ++ + EEK+ A A VE EK AA+ + +EEAAAAV +E++K AAAV K+Q+EL+ L E++K E + EA K R+ LE +VA+ADR++A A+E + K+ ++EKE L+A+L+ + TKY+ RVL DF+A++ + + + K + G++WA EG+++G+ A L P V A + RE++ + PL HVLPPYR+HV P + PVW +V+P L QG W + A + A + + +R V+WV Q+W+ G DA+R+V YVL AT+ FLLR L+ ++ L V L+ LPF ++FWIFFWP ++ G GK++ E + GG A + GG GGK G
Sbjct: 20 CFFALFLLLAWPPLVHADAAAAVNHGSTSGLENKKEAYRSDPAHLIVPTGHDTKYDKVDELTNLLQQKVAALVNAEKAITSLENQLNIASKQLETTAQSLSASDRETSRLTQEVKELTHKLDAAEASAVAATAQATVAVDTATAAAKKETAAWIARAEKAEAGMDVAVTEATRLKAETQALQASVAAGKGLEGQ-WSEEKARMEKELAIVREEKDQAVAGLERAAAEAKARVEEEKEGTEAAMGRMREEAAAAVAEEREKTAAAVSKAQEELSRALQVEREKREEAVSAAMGEATRAKTRVQALEREVADADRRIASAQEQLSGKLAQREKETEALRAKLEEVLATKYTWRVLSGDFSAFSGRMAALTQAKARCGISWAAREGKRRGEEAGRMLQPHVEAARMALGSQCREMEKR----IQPLWTAHVLPPYREHVEPRLAQAAAYLGPVWEGEVRPRLLQGWEWGKRGAGRARAWGQAQWLAVKRRAVIWVRGQDWAAGLDAERVVTSLEYVLVATLFFLLRHLLWRLVMTALGLVVGLITLPFRILFWIFFWPVLLFG-GKRKAKMEVEGPQRGG-AGKAGGGGGKGRG 603
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01670.1 ID=NO18G01670.1|Name=NO18G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2873bp CGTGTACAAAAATAAGTGCGGTCGTCCCGCCTGGCCATGCCCTTGACGCC ACCCGTCTCCGCAAAGCTTAGAAACGTGAGTGATTGATTACGAGATTTAA AGTGCGATGAAATGGATGCAAGGCGCTTCAGATATTTCTTCTAGATTAAA AAAAAAGCTATGTATATGGTAAGCACAGGTTTAATACTATCACACAGGCT TGATTTTGCGTGTTTTTTTTATATTATTTCCCCCTATGTTACCGGTGGCA TAGGCACGGGTTGCCAACTTTGAAGAGAAACTAGGCCCTCCGCCTAACCC TGCACTTTGTCCCAACTTCCCAATATATGTACAGTTGGCTCGTGCGACAG GCACCAGGCGGGGGCGACGTTGCCATGGATGAGGAGCAAGAGAGGAGACA CCGCTCGAGAGTGTTTCAAATGGGACCGTTCATGTGCTTGTTGCCAATTA GAGCAGTGCAAAGTTGGAAACGGAACTATAGTTATTTCAGGTCATTTATT TCCTCCGTCATGACCCTCCGGTCACCCCACGCCAGCCACCGCGACAGACC TAGGCTGTGTTCAGAACACAACTTCTTCGCAGAACAGCAGTGTAAACTAG ATTCACACCTGGTATTCGTCGGGGTCTGGTGTTTGATTCACTCGCGTTCG TGGACTACCTATTTTCTTTCACTTCGCTCATTATTATCAACGCGTCCCCT CGACACCACCAAACACGTACGCCTTGCACTGTCACCACAACCAACCAGTC CACACGCGGGCAGCCTCTGAACAATGGCCACGACGAGAAGACGTGGTGAT CCCCGCTTCCCGGCCACCTTTCTCGCAAGCTGCTCTCTCGTCCTCATGTT CCTGGCTGCGGCCCCTACGGTCGTGCGCGGTGATGCGGCTGCCAGCAACG ACCCCGCCGAGTTGATCGTGCCCACGGGCCATGGCACTCACTTTGACAAG ATTGACGAACTCCAGAATGAAATTCAACAGAAAGTCGCCGCCCTTTTCAC CGCTGAGAAGGCTATCCTCTCCCTCCAAGACCAGCTCAACGCCGCCTCAA CCCAACTTCAAGCAAATTCTGTTGCCCTGACGGCCTCCGACAGCGCGACA AAAGCCCTCACTTCTCAAATCAACGATCTTAGGCACAAGCTCCATTCTGC GGAAGCCACTGCTGAGGCAGCAGCGAAAAAGGAAACTGCTGCCTTGACGG AGAGGTTGCAGAAAGCGGAGAAGGAAGAAAAAGAGGGAAGGGAGGAGGTT AGGAAAATGAGGGAGAAGATTGAAGGGTTGAAAAACGCATTGGTGTCGAA GGAAAAGAAGGAGGGGAAGGTGTGGGAGGAGGAGAAAAACAAGCTGCAGG CCCGGATTTCCACACTGATCGAAGAGAAGGAAGCAGCAGCAGCGACTGTA GAAGTAGAGAAAGTGAAAGCTGCCGCAGCGGTGAGTAAAGCGAAGGAGGA GGCGGCAGCAGCTGTGGTGCAGGAGCAGAAGAAAGCAGCAGCAGCAGTAG GGAAGTCTCAGCAAGAGTTGACCCACACTCTCAGTGCCGAGAAAAAAAAG GCGGAGGCGGAGTTGAAGAGGATGCAGACAGAAGCCGCGGGGTTGAAAGC GCGATTAAACGTGCTGGAAACACAGGTGGCCAATGCGGACCGCAAGCTCG CGGAGGCCAGGGAGGGTTGGAATGAAAAAATGACGAAGAAGGAGAAGGAA GTAGGGGAGCTACAGGCGAGGCTAAAGCTTGCCATGGAAACTAAGTACTC AGGCAGAGTGTTGTGGGAAGATTTCACGGCTTGGACAAGAGGGGTGGGAA TGATGGCTAAGGATAAGACTCAGAAGGGGGTAGCGTGGGCGGTGACAGAG GGGAGGAAGCAAGGGAAGGCTGCTCAGGTCGCTCTCGCACCCCTTGTGGC CACCGCCACGGAGAAGGCGAGGGAGTTGCAGGGGAAGGCAAGCAATGTGT GCATGCCTCTGGTGGAGACTCACGTTCTCCCTCCCTACCGACAGCACGTA CACCCGCTCTGGGAGAAAGTGAGGGAGGCCGCAATTCCTGTGTGGAGGCA GAAGGTGCAGCCTGGTCTCGCGCAGGGGGCAGCATGGGCAGCGAAATGTG CGAGGAAAGGCGTGGCGGTGGCGAGGGAAGAGAGTAGGAAGGGGAGGAGG GCTACGGTGGTCTGGGTGGGGAGGCAGGAGTGGAGCAAAGGGCGTGATGC GGACAGGCTGGTGGCGGGGGCGTTGTATGTGCTGACAGCCACCGTGCTGT TCCTCCTTCGGTCCCTCATTAGGGGGTTTCTGGTCGGGTTGGGAGAGCTG ACGGTGTGGCTGGTGAGGCTGCCTTTTGTCGTCATTTTCTGGATTTTTTT CTGGCCGTTTGTGGTGTTAGGATGGGGAAAGAAGAGGGAAGGTGGGGAGG CGGATGCTGCTGCCGGGGGAGGGGTGGCAGTGCAACGAGGAGGAGAAGGA GGGAAGCGAGGGGGGGGGCACCGCGAGCACACCCGTTGGCATAGCTCTAG CTCGGAAAGTTTAGGGGGAGAGGGATGGAGGGAAAGAGGGAGGAACGGAG AGAAGGAAAGGACGGTGCAAGGTAGTAAGCGTGAGAAGAGAAAAAGAGGA GGAGGGACAGAGGGACGTTTGATGTGGGAGACGTTCACATGGACCAGACA AATAGAAGCGAGGCAGACAAAAGGAAACGACAGACCTGTCTCTAGAGATG AAAAAGGCAAAATGGGACATAAGAAGGGTAGGAGGGCGCTAGCTGCCGAG AGCCGAATCACAGCGCGTTGAACGATCTCAGTGCAACTTGACCCATGCCG TAAGACCACTCGTGCCAACACAACATAAAATACAACGACAGCAAAAAGCC ACAAAGAAAAGAGCAAAAACGTG back to topprotein sequence of NO18G01670.1 >NO18G01670.1-protein ID=NO18G01670.1-protein|Name=NO18G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp MATTRRRGDPRFPATFLASCSLVLMFLAAAPTVVRGDAAASNDPAELIVP TGHGTHFDKIDELQNEIQQKVAALFTAEKAILSLQDQLNAASTQLQANSV ALTASDSATKALTSQINDLRHKLHSAEATAEAAAKKETAALTERLQKAEK EEKEGREEVRKMREKIEGLKNALVSKEKKEGKVWEEEKNKLQARISTLIE EKEAAAATVEVEKVKAAAAVSKAKEEAAAAVVQEQKKAAAAVGKSQQELT HTLSAEKKKAEAELKRMQTEAAGLKARLNVLETQVANADRKLAEAREGWN EKMTKKEKEVGELQARLKLAMETKYSGRVLWEDFTAWTRGVGMMAKDKTQ KGVAWAVTEGRKQGKAAQVALAPLVATATEKARELQGKASNVCMPLVETH VLPPYRQHVHPLWEKVREAAIPVWRQKVQPGLAQGAAWAAKCARKGVAVA REESRKGRRATVVWVGRQEWSKGRDADRLVAGALYVLTATVLFLLRSLIR GFLVGLGELTVWLVRLPFVVIFWIFFWPFVVLGWGKKREGGEADAAAGGG VAVQRGGEGGKRGGGHREHTRWHSSSSESLGGEGWRERGRNGEKERTVQG SKREKRKRGGGTEGRLMWETFTWTRQIEARQTKGNDRPVSRDEKGKMGHK KGRRALAAESRITAR* back to topmRNA from alignment at chr18:532880..535941- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01670.1 ID=NO18G01670.1|Name=NO18G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3062bp|location=Sequence derived from alignment at chr18:532880..535941- (Nannochloropsis oceanica) CGTGTACAAAAATAAGTGCGGTCGTCCCGCCTGGCCATGCCCTTGACGCC
ACCCGTCTCCGCAAAGCTTAGAAACGTGAGTGATTGATTACGAGATTTAA
AGTGCGATGAAATGGATGCAAGGCGCTTCAGATATTTCTTCTAGATTAAA
AAAAAAGCTATGTATATGGTAAGCACAGGTTTAATACTATCACACAGGCT
TGATTTTGCGTGTTTTTTTTATATTATTTCCCCCTATGTTACCGGTGGCA
TAGGCACGGGTTGCCAACTTTGAAGAGAAACTAGGCCCTCCGCCTAACCC
TGCACTTTGTCCCAACTTCCCAATATATGTACAGTTGGCTCGTGCGACAG
GCACCAGGCGGGGGCGACGTTGCCATGGATGAGGAGCAAGAGAGGAGACA
CCGCTCGAGAGTGTTTCAAATGGGACCGTTCATGTGCTTGTTGCCAATTA
GAGCAGTGCAAAGTTGGAAACGGAACTATAGTTATTTCAGGTCATTTATT
TCCTCCGTCATGACCCTCCGGTCACCCCACGCCAGCCACCGCGACAGACC
TAGGCTGTGTTCAGAACACAACTTCTTCGCAGAACAGCAGTGTAAACTAG
ATTCACACCTGGTATTCGTCGGGGTCTGGTGTTTGATTCACTCGCGTTCG
TGGACTACCTATTTTCTTTCACTTCGCTCATTATTATCAACGCGTCCCCT
CGACACCACCAAACACGTACGCCTTGCACTGTCACCACAACCAACCAGTC
CACACGCGGGCAGCCTCTGAACAATGGCCACGACGAGAAGACGTGGTGAT
CCCCGCTTCCCGGCCACCTTTCTCGCAAGCTGCTCTCTCGTCCTCATGTT
CCTGGCTGCGGCCCCTACGGTCGTGCGCGGTGATGCGGCTGCCAGCAACG
ACCCCGCCGAGTTGATCGTGCCCACGGGCCATGGCACTCACTTTGACAAG
ATTGACGAACTCCAGAATGAAATTCAACAGAAAGTCGGTACGTGCGCGCA
TGCACATTTGATTCCAACCCGGGCTTAACCTTTCTCATTTTCTCCATGCT
CTCTTCCAGAACCTCTATATGAGCATTGTGAACTCCCATTCACCATCCCC
CTTCCCTCCTTTTCGTTACCCTTCTGTACCTACATACGCGCTCACTTCCA
CTCTTTCTCTTTCCTTCCCTCCCCAGCCGCCCTTTTCACCGCTGAGAAGG
CTATCCTCTCCCTCCAAGACCAGCTCAACGCCGCCTCAACCCAACTTCAA
GCAAATTCTGTTGCCCTGACGGCCTCCGACAGCGCGACAAAAGCCCTCAC
TTCTCAAATCAACGATCTTAGGCACAAGCTCCATTCTGCGGAAGCCACTG
CTGAGGCAGCAGCGAAAAAGGAAACTGCTGCCTTGACGGAGAGGTTGCAG
AAAGCGGAGAAGGAAGAAAAAGAGGGAAGGGAGGAGGTTAGGAAAATGAG
GGAGAAGATTGAAGGGTTGAAAAACGCATTGGTGTCGAAGGAAAAGAAGG
AGGGGAAGGTGTGGGAGGAGGAGAAAAACAAGCTGCAGGCCCGGATTTCC
ACACTGATCGAAGAGAAGGAAGCAGCAGCAGCGACTGTAGAAGTAGAGAA
AGTGAAAGCTGCCGCAGCGGTGAGTAAAGCGAAGGAGGAGGCGGCAGCAG
CTGTGGTGCAGGAGCAGAAGAAAGCAGCAGCAGCAGTAGGGAAGTCTCAG
CAAGAGTTGACCCACACTCTCAGTGCCGAGAAAAAAAAGGCGGAGGCGGA
GTTGAAGAGGATGCAGACAGAAGCCGCGGGGTTGAAAGCGCGATTAAACG
TGCTGGAAACACAGGTGGCCAATGCGGACCGCAAGCTCGCGGAGGCCAGG
GAGGGTTGGAATGAAAAAATGACGAAGAAGGAGAAGGAAGTAGGGGAGCT
ACAGGCGAGGCTAAAGCTTGCCATGGAAACTAAGTACTCAGGCAGAGTGT
TGTGGGAAGATTTCACGGCTTGGACAAGAGGGGTGGGAATGATGGCTAAG
GATAAGACTCAGAAGGGGGTAGCGTGGGCGGTGACAGAGGGGAGGAAGCA
AGGGAAGGCTGCTCAGGTCGCTCTCGCACCCCTTGTGGCCACCGCCACGG
AGAAGGCGAGGGAGTTGCAGGGGAAGGCAAGCAATGTGTGCATGCCTCTG
GTGGAGACTCACGTTCTCCCTCCCTACCGACAGCACGTACACCCGCTCTG
GGAGAAAGTGAGGGAGGCCGCAATTCCTGTGTGGAGGCAGAAGGTGCAGC
CTGGTCTCGCGCAGGGGGCAGCATGGGCAGCGAAATGTGCGAGGAAAGGC
GTGGCGGTGGCGAGGGAAGAGAGTAGGAAGGGGAGGAGGGCTACGGTGGT
CTGGGTGGGGAGGCAGGAGTGGAGCAAAGGGCGTGATGCGGACAGGCTGG
TGGCGGGGGCGTTGTATGTGCTGACAGCCACCGTGCTGTTCCTCCTTCGG
TCCCTCATTAGGGGGTTTCTGGTCGGGTTGGGAGAGCTGACGGTGTGGCT
GGTGAGGCTGCCTTTTGTCGTCATTTTCTGGATTTTTTTCTGGCCGTTTG
TGGTGTTAGGATGGGGAAAGAAGAGGGAAGGTGGGGAGGCGGATGCTGCT
GCCGGGGGAGGGGTGGCAGTGCAACGAGGAGGAGAAGGAGGGAAGCGAGG
GGGGGGGCACCGCGAGCACACCCGTTGGCATAGCTCTAGCTCGGAAAGTT
TAGGGGGAGAGGGATGGAGGGAAAGAGGGAGGAACGGAGAGAAGGAAAGG
ACGGTGCAAGGTAGTAAGCGTGAGAAGAGAAAAAGAGGAGGAGGGACAGA
GGGACGTTTGATGTGGGAGACGTTCACATGGACCAGACAAATAGAAGCGA
GGCAGACAAAAGGAAACGACAGACCTGTCTCTAGAGATGAAAAAGGCAAA
ATGGGACATAAGAAGGGTAGGAGGGCGCTAGCTGCCGAGAGCCGAATCAC
AGCGCGTTGAACGATCTCAGTGCAACTTGACCCATGCCGTAAGACCACTC
GTGCCAACACAACATAAAATACAACGACAGCAAAAAGCCACAAAGAAAAG
AGCAAAAACGTG back to topCoding sequence (CDS) from alignment at chr18:532880..535941- >NO18G01670.1 ID=NO18G01670.1|Name=NO18G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at chr18:532880..535941- (Nannochloropsis oceanica) ATGGCCACGACGAGAAGACGTGGTGATCCCCGCTTCCCGGCCACCTTTCT CGCAAGCTGCTCTCTCGTCCTCATGTTCCTGGCTGCGGCCCCTACGGTCG TGCGCGGTGATGCGGCTGCCAGCAACGACCCCGCCGAGTTGATCGTGCCC ACGGGCCATGGCACTCACTTTGACAAGATTGACGAACTCCAGAATGAAAT TCAACAGAAAGTCGCCGCCCTTTTCACCGCTGAGAAGGCTATCCTCTCCC TCCAAGACCAGCTCAACGCCGCCTCAACCCAACTTCAAGCAAATTCTGTT GCCCTGACGGCCTCCGACAGCGCGACAAAAGCCCTCACTTCTCAAATCAA CGATCTTAGGCACAAGCTCCATTCTGCGGAAGCCACTGCTGAGGCAGCAG CGAAAAAGGAAACTGCTGCCTTGACGGAGAGGTTGCAGAAAGCGGAGAAG GAAGAAAAAGAGGGAAGGGAGGAGGTTAGGAAAATGAGGGAGAAGATTGA AGGGTTGAAAAACGCATTGGTGTCGAAGGAAAAGAAGGAGGGGAAGGTGT GGGAGGAGGAGAAAAACAAGCTGCAGGCCCGGATTTCCACACTGATCGAA GAGAAGGAAGCAGCAGCAGCGACTGTAGAAGTAGAGAAAGTGAAAGCTGC CGCAGCGGTGAGTAAAGCGAAGGAGGAGGCGGCAGCAGCTGTGGTGCAGG AGCAGAAGAAAGCAGCAGCAGCAGTAGGGAAGTCTCAGCAAGAGTTGACC CACACTCTCAGTGCCGAGAAAAAAAAGGCGGAGGCGGAGTTGAAGAGGAT GCAGACAGAAGCCGCGGGGTTGAAAGCGCGATTAAACGTGCTGGAAACAC AGGTGGCCAATGCGGACCGCAAGCTCGCGGAGGCCAGGGAGGGTTGGAAT GAAAAAATGACGAAGAAGGAGAAGGAAGTAGGGGAGCTACAGGCGAGGCT AAAGCTTGCCATGGAAACTAAGTACTCAGGCAGAGTGTTGTGGGAAGATT TCACGGCTTGGACAAGAGGGGTGGGAATGATGGCTAAGGATAAGACTCAG AAGGGGGTAGCGTGGGCGGTGACAGAGGGGAGGAAGCAAGGGAAGGCTGC TCAGGTCGCTCTCGCACCCCTTGTGGCCACCGCCACGGAGAAGGCGAGGG AGTTGCAGGGGAAGGCAAGCAATGTGTGCATGCCTCTGGTGGAGACTCAC GTTCTCCCTCCCTACCGACAGCACGTACACCCGCTCTGGGAGAAAGTGAG GGAGGCCGCAATTCCTGTGTGGAGGCAGAAGGTGCAGCCTGGTCTCGCGC AGGGGGCAGCATGGGCAGCGAAATGTGCGAGGAAAGGCGTGGCGGTGGCG AGGGAAGAGAGTAGGAAGGGGAGGAGGGCTACGGTGGTCTGGGTGGGGAG GCAGGAGTGGAGCAAAGGGCGTGATGCGGACAGGCTGGTGGCGGGGGCGT TGTATGTGCTGACAGCCACCGTGCTGTTCCTCCTTCGGTCCCTCATTAGG GGGTTTCTGGTCGGGTTGGGAGAGCTGACGGTGTGGCTGGTGAGGCTGCC TTTTGTCGTCATTTTCTGGATTTTTTTCTGGCCGTTTGTGGTGTTAGGAT GGGGAAAGAAGAGGGAAGGTGGGGAGGCGGATGCTGCTGCCGGGGGAGGG GTGGCAGTGCAACGAGGAGGAGAAGGAGGGAAGCGAGGGGGGGGGCACCG CGAGCACACCCGTTGGCATAGCTCTAGCTCGGAAAGTTTAGGGGGAGAGG GATGGAGGGAAAGAGGGAGGAACGGAGAGAAGGAAAGGACGGTGCAAGGT AGTAAGCGTGAGAAGAGAAAAAGAGGAGGAGGGACAGAGGGACGTTTGAT GTGGGAGACGTTCACATGGACCAGACAAATAGAAGCGAGGCAGACAAAAG GAAACGACAGACCTGTCTCTAGAGATGAAAAAGGCAAAATGGGACATAAG AAGGGTAGGAGGGCGCTAGCTGCCGAGAGCCGAATCACAGCGCGTTGA back to top
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