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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:493359..495522 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01510.1 vs.
Match: EWM23357.1 (hypothetical protein Naga_100057g23 [Nannochloropsis gaditana]) HSP 1 Score: 423.3 bits (1087), Expect = 1.200e-114 Identity = 265/460 (57.61%), Postives = 315/460 (68.48%), Query Frame = 0
Query: 32 PSSPPASSSSSPPPPPPPPPPPRLLLPPSSSPSASYTSSSPPPPSLRPAPPASSTRTSLSSSSSQRPLSSSSHSKPSLSSINGTGKSSSSSSSSGSKRPRDGQHGQQPPRHLSATASSSSKTVEPHAYKDKRSRAHPPSSSAPKHPPVQLARWRDALRSDFIVDMQFQVPLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDISLGIEIDTIDRKKWQPPPA--SSLPPSLHPDDMALLEWDLFKGKQKRAGEDGEEAGSEAGREAGGEREEDTGGVATAGQVAAPWMLRPRYETTVTYDCQEEREGGRHGRRKNPPKAEGGEDEEEEEEQGGAEVFDESRQEGWEAAIARTFDEARRGEGLAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAAMEAPLFVLEGGRE-EGLVHGTTVKAGYMRGRGHVTAEAARVGGG 489
P PP SSS+ PPPPPPPPPPP PP S+P PPPP P ++ + S++ SS HS +S NG+ + + + G KRPR GQ PP HL+A +++ K+ +R +S PVQL+RWRDA+RSDF+VD++FQ+PLPEVPLGPRFLT+DSLANLGDL+ Y++ VPLAS+FKY LHSDISLG+EIDTIDRKKWQ P + +SLPPSLHPDD A LEW+LF+G+QKR EDG E GRE G EDT GVATA VAAPWMLRPRYET VTYD Q+ REGG RK G E EE E+ G EV DE+RQEGWEAAIAR+F+EA+RGEGL PRE G + P WVAE+VPD QWA+EL+VV FGNE+RGREEEAA EAPLF +EGGRE EG G TVKAGY RG+GH + AR GGG
Sbjct: 34 PPPPPPSSSAFPPPPPPPPPPPPPPPPPRSAPPL------PPPPQ-----PPGTSGANTSAAPQDGSSFSSFHSDGKPASANGSTHAGPTKHAPG-KRPRP---GQPPPSHLAAATTAAHKS-------QAGTRGRGGASGGSTSAPVQLSRWRDAIRSDFVVDLKFQLPLPEVPLGPRFLTVDSLANLGDLVRYREVVPLASRFKYPLHSDISLGVEIDTIDRKKWQAPVSNGASLPPSLHPDDAAFLEWELFQGRQKREAEDG-----EGGREGG----EDTEGVATAADVAAPWMLRPRYETAVTYDSQQGREGGGAQGRK-------GRAEGEEGEEDGREVLDETRQEGWEAAIARSFEEAQRGEGLGPREAGERKPAWVAELVPDAGQWASELMVVQFGNEVRGREEEAAQEAPLFAVEGGREGEGWGLGRTVKAGYYRGQGHASVGEAREGGG 455
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01510.1 ID=NO18G01510.1|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp ATGTCTTGGCACGGACAGTGCCAGGAACGGGCAGACGACAGGAAAGAGTG GTCTGCATTCAGCTTAAGCCCCGCCACCACCGCCACCACCGCCCCCTCCT CCCCCCCCGCCTCCTCCTCCTCCTCCCCCCCCCCGCCTCCTCCTCCTCCT CCCCCCCCCCGCCTCCTCCTCCCCCCCTCCTCCTCCCCCTCCGCCTCATA CACCTCTTCCTCCCCCCCCCCTCCTTCCCTCCGTCCAGCTCCTCCTGCAA GCAGCACGCGAACAAGCTTAAGCTCCTCGTCATCTCAACGCCCTCTTTCA TCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACGGTACAGGAAA AAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCCCGCGATGGGC AGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGCCAGCAGCAGC AGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCTCACGGGCTCA CCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAACTCGCTCGCT GGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCAATTTCAAGTT CCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTCTCGACAGCCT GGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTGCCCTTGGCTT CCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGGGATAGAAATA GATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTTCCTCCCTCCC GCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGGGACTTGTTCA AGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGCAGGGAGCGAA GCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGGGAGGGGTGGC GACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCGAGGTATGAGA CGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGGGAGACATGGG AGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACGAGGAAGAGGA GGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGACAAGAAGGAT GGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCGAGGGGAGGGA TTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGGTCGCGGAGAT AGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTGGTTCATTTTG GCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGAGGCGCCCTTG TTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACGGGACGACGGT CAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCAGAGGCGGCGA GAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGCGCGGTATTAT CAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAGCAGCACCTGT TGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTGGTACAGCCGG AGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGTGAAGGTTAAG AAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGGTGCAATTGGT TCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTGATGAAGTTGA TGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTTGAAGTGAAGG GAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGGTTGCAAATGA GGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGAGGATGATGGG GATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAAATAATTGCAT TTTCGCTCATG back to topprotein sequence of NO18G01510.1 >NO18G01510.1-protein ID=NO18G01510.1-protein|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=599bp MSWHGQCQERADDRKEWSAFSLSPATTATTAPSSPPASSSSSPPPPPPPP PPPRLLLPPSSSPSASYTSSSPPPPSLRPAPPASSTRTSLSSSSSQRPLS SSSHSKPSLSSINGTGKSSSSSSSSGSKRPRDGQHGQQPPRHLSATASSS SKTVEPHAYKDKRSRAHPPSSSAPKHPPVQLARWRDALRSDFIVDMQFQV PLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDISLGIEI DTIDRKKWQPPPASSLPPSLHPDDMALLEWDLFKGKQKRAGEDGEEAGSE AGREAGGEREEDTGGVATAGQVAAPWMLRPRYETTVTYDCQEEREGGRHG RRKNPPKAEGGEDEEEEEEQGGAEVFDESRQEGWEAAIARTFDEARRGEG LAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAAMEAPL FVLEGGREEGLVHGTTVKAGYMRGRGHVTAEAARVGGGVVSKAFEPARYY QLEVTRTDGGGGEAAPVEGDQQQQQYLLLLVQPETGVVSMCPTVANVKVK KVDRAASGKPARGVQLVHRPLGEEEAMGRVMKLMKAGLEEEEAVEYLK* back to topmRNA from alignment at chr18:493359..495522+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01510.1 ID=NO18G01510.1|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at chr18:493359..495522+ (Nannochloropsis oceanica) ATGTCTTGGCACGGACAGGTATGTGAGGACAGGGGAGGGGAGGAGGGATG
AGGCCGGTGGTAATGATGATGCTTGATCCTTGGGTGGGAGCCTGACAAAC
AGATATTCTATGCCCTCCCTTCAGTGCCAGGAACGGGCAGACGACAGGAA
AGAGTGGTCTGCATTCAGCTTAAGTGGGTGGCATTTGCTTGACGTGGAGG
GAAAAGTGAGAGGGCCATCGTTATAATAACAGTTTCCGCGCTACCCACCC
ACCACACCACCAACGCACAGGCCCCGCCACCACCGCCACCACCGCCCCCT
CCTCCCCCCCCGCCTCCTCCTCCTCCTCCCCCCCCCCGCCTCCTCCTCCT
CCTCCCCCCCCCCGCCTCCTCCTCCCCCCCTCCTCCTCCCCCTCCGCCTC
ATACACCTCTTCCTCCCCCCCCCCTCCTTCCCTCCGTCCAGCTCCTCCTG
CAAGCAGCACGCGAACAAGCTTAAGCTCCTCGTCATCTCAACGCCCTCTT
TCATCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACGGTACAGG
AAAAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCCCGCGATG
GGCAGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGCCAGCAGC
AGCAGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCTCACGGGC
TCACCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAACTCGCTC
GCTGGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCAATTTCAA
GTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTCTCGACAG
CCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTGCCCTTGG
CTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGGGATAGAA
ATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTTCCTCCCT
CCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGGGACTTGT
TCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGCAGGGAGC
GAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGGGAGGGGT
GGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCGAGGTATG
AGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGGGAGACAT
GGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACGAGGAAGA
GGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGACAAGAAG
GATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCGAGGGGAG
GGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGGTCGCGGA
GATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTGGTTCATT
TTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGAGGCGCCC
TTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACGGGACGAC
GGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCAGAGGCGG
CGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGCGCGGTAT
TATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAGCAGCACC
TGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTGGTACAGC
CGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGTGAAGGTT
AAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGGTGCAATT
GGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTGATGAAGT
TGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTTGAAGTGA
AGGGAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGGTTGCAAA
TGAGGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGAGGATGAT
GGGGATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAAATAATTG
CATTTTCGCTCATG back to topCoding sequence (CDS) from alignment at chr18:493359..495522+ >NO18G01510.1 ID=NO18G01510.1|Name=NO18G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=1797bp|location=Sequence derived from alignment at chr18:493359..495522+ (Nannochloropsis oceanica) ATGTCTTGGCACGGACAGTGCCAGGAACGGGCAGACGACAGGAAAGAGTG GTCTGCATTCAGCTTAAGCCCCGCCACCACCGCCACCACCGCCCCCTCCT CCCCCCCCGCCTCCTCCTCCTCCTCCCCCCCCCCGCCTCCTCCTCCTCCT CCCCCCCCCCGCCTCCTCCTCCCCCCCTCCTCCTCCCCCTCCGCCTCATA CACCTCTTCCTCCCCCCCCCCTCCTTCCCTCCGTCCAGCTCCTCCTGCAA GCAGCACGCGAACAAGCTTAAGCTCCTCGTCATCTCAACGCCCTCTTTCA TCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACGGTACAGGAAA AAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCCCGCGATGGGC AGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGCCAGCAGCAGC AGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCTCACGGGCTCA CCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAACTCGCTCGCT GGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCAATTTCAAGTT CCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTCTCGACAGCCT GGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTGCCCTTGGCTT CCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGGGATAGAAATA GATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTTCCTCCCTCCC GCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGGGACTTGTTCA AGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGCAGGGAGCGAA GCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGGGAGGGGTGGC GACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCGAGGTATGAGA CGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGGGAGACATGGG AGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACGAGGAAGAGGA GGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGACAAGAAGGAT GGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCGAGGGGAGGGA TTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGGTCGCGGAGAT AGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTGGTTCATTTTG GCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGAGGCGCCCTTG TTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACGGGACGACGGT CAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCAGAGGCGGCGA GAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGCGCGGTATTAT CAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAGCAGCACCTGT TGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTGGTACAGCCGG AGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGTGAAGGTTAAG AAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGGTGCAATTGGT TCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTGATGAAGTTGA TGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTTGAAGTGA back to top
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