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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:404157..407006 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01160.1 vs.
Match: XP_005855967.1 (calcium-dependent protein kinase [Nannochloropsis gaditana CCMP526]; EKU20376.1 calcium-dependent protein kinase [Nannochloropsis gaditana CCMP526]; EWM23335.1 calcium-dependent protein [Nannochloropsis gaditana]) HSP 1 Score: 860.9 bits (2223), Expect = 2.200e-246 Identity = 447/566 (78.98%), Postives = 498/566 (87.99%), Query Frame = 0
Query: 1 MGNTPGSIKSTKNHQQQQRKHQASPP--RKSVNTDGKVVQIAAAAAVIGGDHYNQQHQEQQQQQRSPAVKVTA-----AAKAGAGEHSPGAAAKATVAASAGASGYVTAGNKDVKTKYDIDPREIGHGHYGVVRKAKNRETGEAFAIKTIRKAKVSRLDSLRREIDILTTVDHPHIIKLVDVYEDDKYLHLVTELCTGGEMFDRIIAKTKSAEGHYSEKDAAGIMRKILDAIDYCHTVHNICHRDLKPENFLFKTTEETAELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRAQFSFPSPEWDEISPGAKDLIRKLLSKDPRKRPTAAAALNHEWFLVLEEGGKNGEKKARALTEHVRNSLRRFIGMNKLKRVALTIIAEQLAESDVSHLQEAFKLLDKDKNGVITVAELQQAAEQEGMANVQELVERLMLGVDVDESASIDYHEFLAATMERSVYVKEEHIKRAFMHFDLNGDGKITVQDLVEALGSEENASEVLGDVDRNGDGVITLDEFQVMMEAAGGSS 560
MGN G +KS+ Q ++ + P RK+VNTDGKVVQIAAAAAVI DH NQ QQQ+ A+KVT+ AAK GAG SPG K TVA+++G+SGYVTAG +D+K+KYDIDPREIGHGHYGVVRKAKNRETGEAFAIK+IRKAKVSRLDSLRREIDIL VDHP IIKLVDVYEDDK+LHLVTELCTGGEMFDRIIAKTKSAEGHYSEKDAA IMRKILDAIDYCHTVHNICHRDLKPENFLFKT + +AELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRA+F+FPSPEWD+ISP AKDLIRKLLSKDPRKRP+AAAALNHEWF VL++ G + +ALTEH+RNSLRRFIGMNKLKRVALTIIAEQ+AE+DV+H+Q+AF+ LD +K+GVITVAELQQAAEQEG+ NV+E V RLM GVDV+E+ +IDY+EFLAATMERSVYV++EHI+RAF HFD + DG ITVQDLVEALG+EENA EVLGD+DRNGDGVI+LDEF+ MMEAAG SS
Sbjct: 1 MGNAQGMVKSSATRQIADKQQERKPTVGRKAVNTDGKVVQIAAAAAVIDSDHCNQPRSHQQQR---TAIKVTSEASKPAAKGGAGGTSPG--HKVTVASTSGSSGYVTAGIRDIKSKYDIDPREIGHGHYGVVRKAKNRETGEAFAIKSIRKAKVSRLDSLRREIDILQAVDHPQIIKLVDVYEDDKFLHLVTELCTGGEMFDRIIAKTKSAEGHYSEKDAAVIMRKILDAIDYCHTVHNICHRDLKPENFLFKTEDPSAELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRAEFTFPSPEWDDISPSAKDLIRKLLSKDPRKRPSAAAALNHEWFQVLKKDG----EITQALTEHLRNSLRRFIGMNKLKRVALTIIAEQVAEADVAHVQKAFEALDTNKDGVITVAELQQAAEQEGLTNVKEQVARLMHGVDVNENTAIDYNEFLAATMERSVYVRDEHIRRAFQHFDQDMDGHITVQDLVEALGTEENAREVLGDIDRNGDGVISLDEFKNMMEAAGSSS 557
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01160.1 ID=NO18G01160.1|Name=NO18G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2488bp AGACAGGTGGGGGAAGGAGCCACGCACGGACGCGCAGCTGCAACCATGGG GAACACACCTGGGTCCATCAAGTCCACCAAAAACCACCAGCAACAACAGC GAAAACATCAAGCTTCCCCCCCTCGCAAGAGCGTCAATACGGATGGCAAG GTCGTACAAATCGCGGCGGCTGCCGCTGTTATTGGAGGGGACCACTATAA CCAGCAGCACCAGGAACAGCAACAGCAACAGCGATCTCCGGCAGTCAAAG TCACGGCGGCGGCAAAAGCAGGGGCTGGCGAGCACAGCCCCGGAGCAGCG GCCAAAGCGACGGTTGCTGCTAGTGCGGGTGCATCGGGCTACGTGACAGC GGGGAATAAGGACGTCAAAACGAAGTATGACATTGACCCCAGGGAGATTG GCCATGGTCATTATGGGGTGGTGAGGAAGGCCAAGAATAGGGAGACGGGG GAAGCGTTTGCGATCAAGACGATCCGGAAGGCGAAGGTCTCGCGGTTGGA TTCGTTGAGGCGGGAGATTGATATTTTGACGACCGTGGACCACCCCCACA TTATAAAGTTAGTAGATGTGTATGAGGATGACAAGTATTTGCATTTGGTC ACGGAATTGTGCACGGGAGGAGAGATGTTCGACCGGATTATTGCCAAGAC AAAGAGCGCGGAAGGGCATTACTCGGAGAAGGACGCTGCAGGGATTATGA GAAAGATTTTGGATGCGATTGATTATTGTCACACGGTCCACAACATCTGC CACCGGGACCTGAAGCCGGAGAACTTTCTGTTTAAAACAACGGAGGAGAC TGCTGAATTGAAGATTATTGATTTTGGGTTGTCGCGCTTTGAGGATGATC AGAAGTACATGACGACGCGAGTCGGGACGCCTTATTATATCGCCCCCGAG GTTTTGAATCGCATGTACGACAAATCATGCGACCTCTGGTCCATCGGCGT CATCATGTACATCCTTCTTTGCGGTTACCCGCCCTTCTATGGCGATACCG ACGCAGACATCTTCGCCTCAGTCCGCCGGGCTCAATTTTCTTTCCCTTCC CCGGAGTGGGACGAGATCTCCCCGGGGGCCAAGGACTTGATTCGGAAGTT GTTGAGCAAGGATCCTAGGAAGAGGCCGACGGCGGCAGCGGCATTGAATC ATGAGTGGTTTTTGGTGCTGGAGGAGGGAGGGAAGAACGGTGAAAAAAAG GCGAGGGCCCTGACGGAACATGTGAGGAATAGTTTGCGGAGGTTTATCGG GATGAATAAGTTGAAGCGGGTGGCACTTACGATCATTGCCGAGCAGCTGG CGGAGTCGGACGTAAGCCATTTGCAGGAGGCCTTCAAATTGTTAGATAAA GATAAGAACGGGGTTATAACTGTGGCAGAATTGCAGCAGGCGGCGGAGCA GGAGGGGATGGCAAATGTCCAGGAGCTGGTGGAGCGGTTGATGTTGGGGG TGGATGTTGACGAGAGTGCAAGCATTGATTATCATGAGTTTTTGGCGGCT ACGATGGAGAGGAGTGTATATGTGAAAGAAGAGCATATAAAGAGGGCATT TATGCATTTTGATTTGAACGGGGATGGGAAAATCACAGTGCAGGACTTGG TGGAGGCGCTGGGGTCGGAGGAAAACGCGAGTGAAGTGTTGGGCGATGTT GACAGGAATGGCGATGGCGTGATTACGTTGGACGAGTTCCAGGTAATGAT GGAGGCGGCAGGGGGGTCAAGCTCTCGTAATTTCCATTAGATAGAAGAAG CAAGAAGGAGGGAAAGGGGAAACCCCGGGTGTTTTAGTTTTCTCCCGTAT TGTAGTACTTCGGATAAAAGGAAAAGGAGGGAGAGTTTTGACGAGAAAAT TTCAAAGACCAATCTTTTTATTTGATTCCCATGAATGGGTAGAGAAGTTG GGACAGCAAACTCAAGAAGTGTGTTTCAAAGGAGGTGAAGTCTGAGCAGT AAAGGAAAGGAAGTTCAAGTACCCCACAACCGAGAAAGGAGGGAGAGGGA GGCAAGAAAGGTGGACAGTGAGAGGTAGAGGGGAAGGGGCCCTGCAAACG CCGAAGGCTACGAATAAGATTGAAGACAAGAGATTAGAAAAAGAAGACAA GGAAGAAAGTGCATGAAATGGGAAGAAGGAAAGAGTGTGTAATAGTATCA GAATGTGGAAAAGAAAGTAATCGTCACAAGTGAGAGGAGTCGAGACATTG CGGAGACTTGCCTTCCATTTCTTCTTTCAGCAATGCATTTGAGTAGTGTA GGGCGTATTCAAAAGGACGAACCCGTGCGCAGCTGCAGTGTTTGGTGGCA GTACAAGCAGCAATAATAGCTGCAACAAAGAAGGGAGACGTGTACATGTC GATATAAAATAAGAAAGAGAAAAGGATATAGCGAAGAGCAAAGAGTCCAA GCGCGAATGCCATTTGATTGAAGACAGAAGACTCATTTTGTTTCTGTAAG TTAGATCGACTGTGAAAAGGGGGGAAATCAAAATTCGA back to topprotein sequence of NO18G01160.1 >NO18G01160.1-protein ID=NO18G01160.1-protein|Name=NO18G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp MGNTPGSIKSTKNHQQQQRKHQASPPRKSVNTDGKVVQIAAAAAVIGGDH YNQQHQEQQQQQRSPAVKVTAAAKAGAGEHSPGAAAKATVAASAGASGYV TAGNKDVKTKYDIDPREIGHGHYGVVRKAKNRETGEAFAIKTIRKAKVSR LDSLRREIDILTTVDHPHIIKLVDVYEDDKYLHLVTELCTGGEMFDRIIA KTKSAEGHYSEKDAAGIMRKILDAIDYCHTVHNICHRDLKPENFLFKTTE ETAELKIIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSI GVIMYILLCGYPPFYGDTDADIFASVRRAQFSFPSPEWDEISPGAKDLIR KLLSKDPRKRPTAAAALNHEWFLVLEEGGKNGEKKARALTEHVRNSLRRF IGMNKLKRVALTIIAEQLAESDVSHLQEAFKLLDKDKNGVITVAELQQAA EQEGMANVQELVERLMLGVDVDESASIDYHEFLAATMERSVYVKEEHIKR AFMHFDLNGDGKITVQDLVEALGSEENASEVLGDVDRNGDGVITLDEFQV MMEAAGGSSSRNFH* back to topmRNA from alignment at chr18:404157..407006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01160.1 ID=NO18G01160.1|Name=NO18G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2850bp|location=Sequence derived from alignment at chr18:404157..407006+ (Nannochloropsis oceanica) AGACAGGTGGGGGAAGGAGCCACGCACGGACGCGCAGCTGCAACCATGGG
GAACACACCTGGGTCCATCAAGTCCACGTAAGAAGTCACAATGAAAATTG
AATGGATATGAAATTCGTGTCAGGGATGGAGCAAAGGGGAACAGGGAGGA
AATTAAAAGGCTTGTGAGGGCTCATCAGTGTGTATGTCTGTCTGAGTTCA
TGTCTCGAGTGCTTATTAAAGCGGACTTAGGTCATGCTCATTCTAATACG
AATAAATGACACGGCAGCTCAAATATTCGCCTTGATTTCTCGTTCATCCA
TACGCCAGCAAAAACCACCAGCAACAACAGCGAAAACATCAAGCTTCCCC
CCCTCGCAAGAGCGTCAATACGGATGGCAAGGTCGTACAAATCGCGGCGG
CTGCCGCTGTTATTGGAGGGGACCACTATAACCAGCAGCACCAGGAACAG
CAACAGCAACAGCGATCTCCGGCAGTCAAAGTCACGGCGGCGGCAAAAGC
AGGGGCTGGCGAGCACAGCCCCGGAGCAGCGGCCAAAGCGACGGTTGCTG
CTAGTGCGGGTGCATCGGGCTACGTGACAGCGGGGAATAAGGACGTCAAA
ACGAAGTATGACATTGACCCCAGGGAGATTGGCCATGGTCATTATGGGGT
GGTGAGGAAGGCCAAGAATAGGGAGACGGGGGAAGCGTTTGCGATCAAGA
CGATCCGGAAGGCGAAGGTCTCGCGGTTGGATTCGTTGAGGCGGGAGATT
GATATTTTGACGACCGTGGACCACCCCCACATTATAAAGTTAGTAGATGT
GTATGAGGATGACAAGTATTTGCATTTGGTCACGGAATTGTGCACGGGAG
GAGAGATGTTCGACCGGATTATTGCCAAGACAAAGAGCGCGGAAGGGCAT
TACTCGGAGAAGGACGCTGCAGGGATTATGAGAAAGATTTTGGATGCGAT
TGATTATTGTCACACGGTCCACAACATCTGCCACCGGGACCTGAAGCCGG
AGAACTTTCTGTTTAAAACAACGGAGGAGACTGCTGAATTGAAGATTATT
GATTTTGGGTTGTCGCGCTTTGAGGATGATCAGAAGTACATGACGACGCG
AGTCGGGACGCCTTATTGTAAGTAGCCTTGGTAAACCTATTCATCCATCC
ATTAAGTTATTAACCTTTTTAAAATCGCATTAAAGAAGTTTGAGATAATG
CATCCTGGGACACGTCTCACATTCCCGCCCTCCACCATTTCCACCCAGAT
ATCGCCCCCGAGGTTTTGAATCGCATGTACGACAAATCATGCGACCTCTG
GTCCATCGGCGTCATCATGTACATCCTTCTTTGCGGTTACCCGCCCTTCT
ATGGCGATACCGACGCAGACATCTTCGCCTCAGTCCGCCGGGCTCAATTT
TCTTTCCCTTCCCCGGAGTGGGACGAGATCTCCCCGGGGGCCAAGGACTT
GATTCGGAAGTTGTTGAGCAAGGATCCTAGGAAGAGGCCGACGGCGGCAG
CGGCATTGAATCATGAGTGGTTTTTGGTGCTGGAGGAGGGAGGGAAGAAC
GGTGAAAAAAAGGCGAGGGCCCTGACGGAACATGTGAGGAATAGTTTGCG
GAGGTTTATCGGGATGAATAAGTTGAAGCGGGTGGCACTTACGATCATTG
CCGAGCAGCTGGCGGAGTCGGACGTAAGCCATTTGCAGGAGGCCTTCAAA
TTGTTAGATAAAGATAAGAACGGGGTTATAACTGTGGCAGAATTGCAGCA
GGCGGCGGAGCAGGAGGGGATGGCAAATGTCCAGGAGCTGGTGGAGCGGT
TGATGTTGGGGGTGGATGTTGACGAGAGTGCAAGCATTGATTATCATGAG
TTTTTGGCGGCTACGATGGAGAGGAGTGTATATGTGAAAGAAGAGCATAT
AAAGAGGGCATTTATGCATTTTGATTTGAACGGGGATGGGAAAATCACAG
TGCAGGACTTGGTGGAGGCGCTGGGGTCGGAGGAAAACGCGAGTGAAGTG
TTGGGCGATGTTGACAGGAATGGCGATGGCGTGATTACGTTGGACGAGTT
CCAGGTAATGATGGAGGCGGCAGGGGGGTCAAGCTCTCGTAATTTCCATT
AGATAGAAGAAGCAAGAAGGAGGGAAAGGGGAAACCCCGGGTGTTTTAGT
TTTCTCCCGTATTGTAGTACTTCGGATAAAAGGAAAAGGAGGGAGAGTTT
TGACGAGAAAATTTCAAAGACCAATCTTTTTATTTGATTCCCATGAATGG
GTAGAGAAGTTGGGACAGCAAACTCAAGAAGTGTGTTTCAAAGGAGGTGA
AGTCTGAGCAGTAAAGGAAAGGAAGTTCAAGTACCCCACAACCGAGAAAG
GAGGGAGAGGGAGGCAAGAAAGGTGGACAGTGAGAGGTAGAGGGGAAGGG
GCCCTGCAAACGCCGAAGGCTACGAATAAGATTGAAGACAAGAGATTAGA
AAAAGAAGACAAGGAAGAAAGTGCATGAAATGGGAAGAAGGAAAGAGTGT
GTAATAGTATCAGAATGTGGAAAAGAAAGTAATCGTCACAAGTGAGAGGA
GTCGAGACATTGCGGAGACTTGCCTTCCATTTCTTCTTTCAGCAATGCAT
TTGAGTAGTGTAGGGCGTATTCAAAAGGACGAACCCGTGCGCAGCTGCAG
TGTTTGGTGGCAGTACAAGCAGCAATAATAGCTGCAACAAAGAAGGGAGA
CGTGTACATGTCGATATAAAATAAGAAAGAGAAAAGGATATAGCGAAGAG
CAAAGAGTCCAAGCGCGAATGCCATTTGATTGAAGACAGAAGACTCATTT
TGTTTCTGTAAGTTAGATCGACTGTGAAAAGGGGGGAAATCAAAATTCGA
back to topCoding sequence (CDS) from alignment at chr18:404157..407006+ >NO18G01160.1 ID=NO18G01160.1|Name=NO18G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at chr18:404157..407006+ (Nannochloropsis oceanica) ATGGGGAACACACCTGGGTCCATCAAGTCCACCAAAAACCACCAGCAACA ACAGCGAAAACATCAAGCTTCCCCCCCTCGCAAGAGCGTCAATACGGATG GCAAGGTCGTACAAATCGCGGCGGCTGCCGCTGTTATTGGAGGGGACCAC TATAACCAGCAGCACCAGGAACAGCAACAGCAACAGCGATCTCCGGCAGT CAAAGTCACGGCGGCGGCAAAAGCAGGGGCTGGCGAGCACAGCCCCGGAG CAGCGGCCAAAGCGACGGTTGCTGCTAGTGCGGGTGCATCGGGCTACGTG ACAGCGGGGAATAAGGACGTCAAAACGAAGTATGACATTGACCCCAGGGA GATTGGCCATGGTCATTATGGGGTGGTGAGGAAGGCCAAGAATAGGGAGA CGGGGGAAGCGTTTGCGATCAAGACGATCCGGAAGGCGAAGGTCTCGCGG TTGGATTCGTTGAGGCGGGAGATTGATATTTTGACGACCGTGGACCACCC CCACATTATAAAGTTAGTAGATGTGTATGAGGATGACAAGTATTTGCATT TGGTCACGGAATTGTGCACGGGAGGAGAGATGTTCGACCGGATTATTGCC AAGACAAAGAGCGCGGAAGGGCATTACTCGGAGAAGGACGCTGCAGGGAT TATGAGAAAGATTTTGGATGCGATTGATTATTGTCACACGGTCCACAACA TCTGCCACCGGGACCTGAAGCCGGAGAACTTTCTGTTTAAAACAACGGAG GAGACTGCTGAATTGAAGATTATTGATTTTGGGTTGTCGCGCTTTGAGGA TGATCAGAAGTACATGACGACGCGAGTCGGGACGCCTTATTATATCGCCC CCGAGGTTTTGAATCGCATGTACGACAAATCATGCGACCTCTGGTCCATC GGCGTCATCATGTACATCCTTCTTTGCGGTTACCCGCCCTTCTATGGCGA TACCGACGCAGACATCTTCGCCTCAGTCCGCCGGGCTCAATTTTCTTTCC CTTCCCCGGAGTGGGACGAGATCTCCCCGGGGGCCAAGGACTTGATTCGG AAGTTGTTGAGCAAGGATCCTAGGAAGAGGCCGACGGCGGCAGCGGCATT GAATCATGAGTGGTTTTTGGTGCTGGAGGAGGGAGGGAAGAACGGTGAAA AAAAGGCGAGGGCCCTGACGGAACATGTGAGGAATAGTTTGCGGAGGTTT ATCGGGATGAATAAGTTGAAGCGGGTGGCACTTACGATCATTGCCGAGCA GCTGGCGGAGTCGGACGTAAGCCATTTGCAGGAGGCCTTCAAATTGTTAG ATAAAGATAAGAACGGGGTTATAACTGTGGCAGAATTGCAGCAGGCGGCG GAGCAGGAGGGGATGGCAAATGTCCAGGAGCTGGTGGAGCGGTTGATGTT GGGGGTGGATGTTGACGAGAGTGCAAGCATTGATTATCATGAGTTTTTGG CGGCTACGATGGAGAGGAGTGTATATGTGAAAGAAGAGCATATAAAGAGG GCATTTATGCATTTTGATTTGAACGGGGATGGGAAAATCACAGTGCAGGA CTTGGTGGAGGCGCTGGGGTCGGAGGAAAACGCGAGTGAAGTGTTGGGCG ATGTTGACAGGAATGGCGATGGCGTGATTACGTTGGACGAGTTCCAGGTA ATGATGGAGGCGGCAGGGGGGTCAAGCTCTCGTAATTTCCATTAG back to top
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