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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:385968..388262 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01100.1 vs.
Match: EWM23334.1 (group xv phospholipase a2 [Nannochloropsis gaditana]) HSP 1 Score: 830.9 bits (2145), Expect = 2.800e-237 Identity = 379/482 (78.63%), Postives = 434/482 (90.04%), Query Frame = 0
Query: 165 EDSDRGADSKSKTALDHGPTPAETDPLYLSRAKSIREAIGRDPVIVLNGLGGAGLQFRLRGAKPSYSYCRTWYLRFHTAWILPRVVIPPIARCLMDFITPIYDSMTQTFSNKPGVAVKVTGFGQILSLENLGPSILPLRNFDYIRGFVKFMISELGYGPGLDLFAAPYDWRYTPDVLKEQGYFRDLQALVETAYITSGNRRVHLMGHSLGGVVALAFLNDVPLEWKQIYIKSYLPVGSPFGGTVVNVMGSCSGYNLGLPLAPADLRDFEAQAPTGPWLFPRPSLWPPDEILVQTPNQSYSAHDYERLLRDLGLGKAALPVYKHVAPLYLETLIPPGIDVHVIHSTGNPTIASLIYNQSFNGSMDQIPLPPFHVFGPGDGTVPERSLLRPFNEWHPPGKEGGKEGGWVLTHHVIEGVNHMDICNFRGFFRVLTDILGNHVDRTLRPESDALETSPDAWKTRMKQRWAPIEAALDAAEEMVFGP 647
E + A SK KTAL+HGP P ETDPLYLSRA+++RE+ GRDPV+VLNGLGGAGL+FRLRGAKP+ SYCR+WY R+HTAWILPRV+IPP+ARCLM+F+TP+YD+ TF +KPGV VKV GFGQI+SLENLGPS+LPLRNFDYI GF+ FM++ELGYGPGLDLFAAPYDWRY+PDVLKEQGYFRDL+ALVETAY+T+G RRVHLMGHSLGGVVALAFLN++PLEWK+ YIKSYLPVGSPF GTVVNVMG+CSGYNLGLPLAP+DLRDFEAQAP+GPWLFP+PSLWPPDEILV+TPNQSY+AHDYERLL DLGLG+A+LPVY+HVAPLYLETL+PPGIDVHVIHS GNPTIASL+YNQSFNGSM +IP PP ++GPGDGTVPERSL+RPF EW P + W +THHV+EGVNHMDICNFRGFFRVLTDILGNHVDRT PE++ALET+PD WKTR+K WAP +AA + A+EMVFGP
Sbjct: 112 EATGNDAPSKPKTALNHGPAPPETDPLYLSRAQAVRESPGRDPVVVLNGLGGAGLKFRLRGAKPTRSYCRSWYARWHTAWILPRVLIPPVARCLMEFLTPVYDAEAGTFDSKPGVEVKVDGFGQIISLENLGPSMLPLRNFDYIHGFINFMMTELGYGPGLDLFAAPYDWRYSPDVLKEQGYFRDLRALVETAYVTAGKRRVHLMGHSLGGVVALAFLNEMPLEWKRRYIKSYLPVGSPFAGTVVNVMGACSGYNLGLPLAPSDLRDFEAQAPSGPWLFPQPSLWPPDEILVRTPNQSYTAHDYERLLTDLGLGEASLPVYRHVAPLYLETLVPPGIDVHVIHSQGNPTIASLVYNQSFNGSMAEIPSPPVLIYGPGDGTVPERSLMRPFFEWSP-------DESWRMTHHVLEGVNHMDICNFRGFFRVLTDILGNHVDRTPAPEAEALETAPDPWKTRLKSAWAPFQAAANYADEMVFGP 586
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01100.1 ID=NO18G01100.1|Name=NO18G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp ACAAAGGAAGAGGCGGTGTTCTCGCTGTCGCTGCCTGGCTTGGCTCTTGG CCGGCATCGAACATGACGTGGGTTCCCAGTGGCAAGCCTCTTCTTCCACC ACCTGGCCCCCCGCCGGCCGAGGCACATCACGCGCCTCCCAGAAGAAGAT GGGGAGCTGGATTCTTCTTAGCGATGACGCTATCGTGCTCTCTATGGCCT TTGGGAGTGCTGGGGCAACTCGGAGGCAGCAGTGACGACTCGCACGGCCC ACAGCTCCTTCAAGAGGACTTGGACATGGCCTCCTTCCTCGGTATTGACC TCGGCAGTGGTGAGAATGCCGACGCATTTGCCTCCTTCCTAGATCTGGGC AGCAGCAGCAGCAGCAGCAGCAGCACCAATTACGACACGAGCGCCGAAAC TGTAGATTCCTTTCCCGGCAAGAGCAGTTCTACAAGCGGCGACGACGGGA TCGAGAACCAAGCCTCCTTGCTTGGCCTAGCCGGCCTGGACAGCAGCAGC ACTGATATTGACTCTGAGTCCCCAGAAAAACTCTCCTTCTTTGGCCATGG CAATGAGGACAGCGATAGAGGGGCCGATTCCAAGTCCAAGACCGCACTAG ATCACGGCCCCACCCCAGCGGAGACAGATCCCCTCTATTTATCCCGGGCT AAAAGCATCCGCGAGGCCATTGGCCGGGATCCTGTGATCGTTTTGAATGG GCTAGGTGGCGCAGGATTACAATTTAGGTTGCGGGGGGCGAAACCTTCGT ATTCTTACTGTCGCACCTGGTATTTACGCTTCCATACCGCGTGGATCTTG CCGAGGGTTGTGATTCCTCCGATAGCGAGATGCTTGATGGATTTCATCAC GCCTATCTACGACTCGATGACACAAACATTTAGTAATAAGCCAGGAGTAG CGGTGAAGGTGACTGGCTTTGGGCAGATTCTTTCGTTGGAAAACTTAGGG CCGTCGATTTTGCCGCTTCGGAATTTTGATTACATCAGAGGCTTTGTTAA GTTTATGATTAGTGAACTAGGGTACGGGCCTGGCCTTGACCTATTTGCAG CGCCTTATGACTGGAGGTACACGCCTGATGTGCTCAAGGAACAGGGATAC TTCCGGGACCTGCAAGCCCTCGTTGAAACCGCATATATCACTTCAGGTAA TCGTCGCGTGCACCTAATGGGACATTCGTTGGGGGGGGTCGTCGCCCTGG CCTTCCTGAATGACGTGCCGTTAGAATGGAAGCAGATCTACATCAAATCC TACCTCCCCGTCGGCAGTCCCTTCGGTGGCACGGTTGTCAATGTCATGGG ATCATGCTCCGGGTATAATCTCGGCCTCCCCCTCGCTCCTGCCGACCTGC GAGATTTCGAGGCCCAAGCACCGACGGGCCCCTGGCTCTTCCCCCGGCCC TCACTGTGGCCCCCAGATGAGATTCTCGTACAGACACCCAATCAAAGCTA TTCTGCACATGATTACGAACGCCTGCTGCGTGATTTAGGCCTGGGTAAAG CTGCTCTCCCGGTGTACAAGCATGTTGCTCCGCTCTATCTCGAGACGCTT ATCCCCCCCGGCATCGACGTCCACGTCATCCACTCGACTGGCAACCCCAC CATCGCCTCCCTCATCTACAACCAGTCCTTCAATGGAAGCATGGACCAAA TTCCTCTCCCTCCCTTCCACGTCTTTGGCCCTGGTGATGGCACGGTCCCC GAAAGGAGCTTGCTGAGGCCGTTCAATGAGTGGCATCCCCCCGGGAAGGA GGGAGGGAAGGAGGGAGGGTGGGTGTTGACGCACCATGTGATAGAAGGGG TGAACCACATGGATATTTGCAATTTTCGAGGCTTTTTCAGGGTCTTGACC GATATATTGGGGAACCATGTGGACAGAACCTTGCGGCCGGAATCGGACGC GCTGGAAACGTCACCCGACGCCTGGAAGACGAGAATGAAGCAGCGCTGGG CGCCGATCGAGGCGGCCTTGGATGCCGCAGAGGAGATGGTCTTTGGTCCT TAGGCTTCAGGATCAGGGACGAGAAGGAGACAAGGGGAGTGGGGTGCATG TGAGGATTGGGCTTGTGCTTGCACTGCTGGCCTTGTCTATCTTGTATTTT AGCGAGGGAGACAGACTGCTCCATGTAGATGTAGGGCTTGGTCGATAAAA TAAATGAATGCTAAATGTAAAGGTCCGAGC back to topprotein sequence of NO18G01100.1 >NO18G01100.1-protein ID=NO18G01100.1-protein|Name=NO18G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=647bp MTWVPSGKPLLPPPGPPPAEAHHAPPRRRWGAGFFLAMTLSCSLWPLGVL GQLGGSSDDSHGPQLLQEDLDMASFLGIDLGSGENADAFASFLDLGSSSS SSSSTNYDTSAETVDSFPGKSSSTSGDDGIENQASLLGLAGLDSSSTDID SESPEKLSFFGHGNEDSDRGADSKSKTALDHGPTPAETDPLYLSRAKSIR EAIGRDPVIVLNGLGGAGLQFRLRGAKPSYSYCRTWYLRFHTAWILPRVV IPPIARCLMDFITPIYDSMTQTFSNKPGVAVKVTGFGQILSLENLGPSIL PLRNFDYIRGFVKFMISELGYGPGLDLFAAPYDWRYTPDVLKEQGYFRDL QALVETAYITSGNRRVHLMGHSLGGVVALAFLNDVPLEWKQIYIKSYLPV GSPFGGTVVNVMGSCSGYNLGLPLAPADLRDFEAQAPTGPWLFPRPSLWP PDEILVQTPNQSYSAHDYERLLRDLGLGKAALPVYKHVAPLYLETLIPPG IDVHVIHSTGNPTIASLIYNQSFNGSMDQIPLPPFHVFGPGDGTVPERSL LRPFNEWHPPGKEGGKEGGWVLTHHVIEGVNHMDICNFRGFFRVLTDILG NHVDRTLRPESDALETSPDAWKTRMKQRWAPIEAALDAAEEMVFGP* back to topmRNA from alignment at chr18:385968..388262- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01100.1 ID=NO18G01100.1|Name=NO18G01100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2295bp|location=Sequence derived from alignment at chr18:385968..388262- (Nannochloropsis oceanica) ACAAAGGAAGAGGCGGTGTTCTCGCTGTCGCTGCCTGGCTTGGCTCTTGG
CCGGCATCGAACATGACGTGGGTTCCCAGTGGCAAGCCTCTTCTTCCACC
ACCTGGCCCCCCGCCGGCCGAGGCACATCACGCGCCTCCCAGAAGAAGAT
GGGGAGCTGGATTCTTCTTAGCGATGACGCTATCGTGCTCTCTATGGCCT
TTGGGAGTGCTGGGGCAACTCGGAGGCAGCAGTGACGACTCGCACGGCCC
ACAGCTCCTTCAAGAGGACTTGGACATGGCCTCCTTCCTCGGTATTGACC
TCGGCAGTGGTGAGAATGCCGACGCATTTGCCTCCTTCCTAGATCTGGGC
AGCAGCAGCAGCAGCAGCAGCAGCACCAATTACGACACGAGCGCCGAAAC
TGTAGATTCCTTTCCCGGCAAGAGCAGTTCTACAAGCGGCGACGACGGGA
TCGAGAACCAAGCCTCCTTGCTTGGCCTAGCCGGCCTGGACAGCAGCAGC
ACTGATATTGACTCTGAGTCCCCAGAAAAACTCTCCTTCTTTGGCCATGG
CAATGAGGACAGCGATAGAGGGGCCGATTCCAAGTCCAAGACCGCACTAG
ATCACGGCCCCACCCCAGCGGAGACAGATCCCCTCTATTTATCCCGGGCT
AAAAGCATCCGCGAGGCCATTGGCCGGGATCCTGTGATCGTTTTGAATGG
GCTAGGTGGCGCAGGATTACAATTTAGGTTGCGGGGGGCGAAACCTTCGT
ATTCTTACTGTCGCACCTGGTATTTACGCTTCCATACCGCGTGGATCTTG
CCGAGGGTTGTGATTCCTCCGATAGCGAGATGCTTGATGGATTTCATCAC
GCCTATCTACGACTCGATGACACAAACATTTAGTAATAAGCCAGGAGTAG
CGGTGAAGGTGACTGGCTTTGGGCAGATTCTTTCGTTGGAAAACTTAGGG
CCGTCGATTTTGCCGCTTCGGAATTTTGATTACATCAGAGGCTTTGTTAA
GTTTATGATTAGTGAACTAGGGTACGGGCCTGGCCTTGACCTATTTGCAG
CGCCTTATGACTGGAGGTACACGCCTGATGTGCTCAAGGAACAGGTGAAT
CCCTCTTCCCTTGTTAACTTCTTCCTCCACCTTCTGAAGCTCCTGAAGTT
CTCACCTCCCTCCTCTCTCCTCTCTCCCTTCTCTCCCTTCCTCTCCCTTT
CATCCCTAGGGATACTTCCGGGACCTGCAAGCCCTCGTTGAAACCGCATA
TATCACTTCAGGTAATCGTCGCGTGCACCTAATGGGACATTCGTTGGGGG
GGGTCGTCGCCCTGGCCTTCCTGAATGACGTGCCGTTAGAATGGAAGCAG
ATCTACATCAAATCCTACCTCCCCGTCGGCAGTCCCTTCGGTGGCACGGT
TGTCAATGTCATGGGATCATGCTCCGGGTATAATCTCGGCCTCCCCCTCG
CTCCTGCCGACCTGCGAGATTTCGAGGCCCAAGCACCGACGGGCCCCTGG
CTCTTCCCCCGGCCCTCACTGTGGCCCCCAGATGAGATTCTCGTACAGAC
ACCCAATCAAAGCTATTCTGCACATGATTACGAACGCCTGCTGCGTGATT
TAGGCCTGGGTAAAGCTGCTCTCCCGGTGTACAAGCATGTTGCTCCGCTC
TATCTCGAGACGCTTATCCCCCCCGGCATCGACGTCCACGTCATCCACTC
GACTGGCAACCCCACCATCGCCTCCCTCATCTACAACCAGTCCTTCAATG
GAAGCATGGACCAAATTCCTCTCCCTCCCTTCCACGTCTTTGGCCCTGGT
GATGGCACGGTCCCCGAAAGGAGCTTGCTGAGGCCGTTCAATGAGTGGCA
TCCCCCCGGGAAGGAGGGAGGGAAGGAGGGAGGGTGGGTGTTGACGCACC
ATGTGATAGAAGGGGTGAACCACATGGATATTTGCAATTTTCGAGGCTTT
TTCAGGGTCTTGACCGATATATTGGGGAACCATGTGGACAGAACCTTGCG
GCCGGAATCGGACGCGCTGGAAACGTCACCCGACGCCTGGAAGACGAGAA
TGAAGCAGCGCTGGGCGCCGATCGAGGCGGCCTTGGATGCCGCAGAGGAG
ATGGTCTTTGGTCCTTAGGCTTCAGGATCAGGGACGAGAAGGAGACAAGG
GGAGTGGGGTGCATGTGAGGATTGGGCTTGTGCTTGCACTGCTGGCCTTG
TCTATCTTGTATTTTAGCGAGGGAGACAGACTGCTCCATGTAGATGTAGG
GCTTGGTCGATAAAATAAATGAATGCTAAATGTAAAGGTCCGAGC back to topCoding sequence (CDS) from alignment at chr18:385968..388262- >NO18G01100.1 ID=NO18G01100.1|Name=NO18G01100.1|organism=Nannochloropsis oceanica|type=CDS|length=1941bp|location=Sequence derived from alignment at chr18:385968..388262- (Nannochloropsis oceanica) ATGACGTGGGTTCCCAGTGGCAAGCCTCTTCTTCCACCACCTGGCCCCCC GCCGGCCGAGGCACATCACGCGCCTCCCAGAAGAAGATGGGGAGCTGGAT TCTTCTTAGCGATGACGCTATCGTGCTCTCTATGGCCTTTGGGAGTGCTG GGGCAACTCGGAGGCAGCAGTGACGACTCGCACGGCCCACAGCTCCTTCA AGAGGACTTGGACATGGCCTCCTTCCTCGGTATTGACCTCGGCAGTGGTG AGAATGCCGACGCATTTGCCTCCTTCCTAGATCTGGGCAGCAGCAGCAGC AGCAGCAGCAGCACCAATTACGACACGAGCGCCGAAACTGTAGATTCCTT TCCCGGCAAGAGCAGTTCTACAAGCGGCGACGACGGGATCGAGAACCAAG CCTCCTTGCTTGGCCTAGCCGGCCTGGACAGCAGCAGCACTGATATTGAC TCTGAGTCCCCAGAAAAACTCTCCTTCTTTGGCCATGGCAATGAGGACAG CGATAGAGGGGCCGATTCCAAGTCCAAGACCGCACTAGATCACGGCCCCA CCCCAGCGGAGACAGATCCCCTCTATTTATCCCGGGCTAAAAGCATCCGC GAGGCCATTGGCCGGGATCCTGTGATCGTTTTGAATGGGCTAGGTGGCGC AGGATTACAATTTAGGTTGCGGGGGGCGAAACCTTCGTATTCTTACTGTC GCACCTGGTATTTACGCTTCCATACCGCGTGGATCTTGCCGAGGGTTGTG ATTCCTCCGATAGCGAGATGCTTGATGGATTTCATCACGCCTATCTACGA CTCGATGACACAAACATTTAGTAATAAGCCAGGAGTAGCGGTGAAGGTGA CTGGCTTTGGGCAGATTCTTTCGTTGGAAAACTTAGGGCCGTCGATTTTG CCGCTTCGGAATTTTGATTACATCAGAGGCTTTGTTAAGTTTATGATTAG TGAACTAGGGTACGGGCCTGGCCTTGACCTATTTGCAGCGCCTTATGACT GGAGGTACACGCCTGATGTGCTCAAGGAACAGGGATACTTCCGGGACCTG CAAGCCCTCGTTGAAACCGCATATATCACTTCAGGTAATCGTCGCGTGCA CCTAATGGGACATTCGTTGGGGGGGGTCGTCGCCCTGGCCTTCCTGAATG ACGTGCCGTTAGAATGGAAGCAGATCTACATCAAATCCTACCTCCCCGTC GGCAGTCCCTTCGGTGGCACGGTTGTCAATGTCATGGGATCATGCTCCGG GTATAATCTCGGCCTCCCCCTCGCTCCTGCCGACCTGCGAGATTTCGAGG CCCAAGCACCGACGGGCCCCTGGCTCTTCCCCCGGCCCTCACTGTGGCCC CCAGATGAGATTCTCGTACAGACACCCAATCAAAGCTATTCTGCACATGA TTACGAACGCCTGCTGCGTGATTTAGGCCTGGGTAAAGCTGCTCTCCCGG TGTACAAGCATGTTGCTCCGCTCTATCTCGAGACGCTTATCCCCCCCGGC ATCGACGTCCACGTCATCCACTCGACTGGCAACCCCACCATCGCCTCCCT CATCTACAACCAGTCCTTCAATGGAAGCATGGACCAAATTCCTCTCCCTC CCTTCCACGTCTTTGGCCCTGGTGATGGCACGGTCCCCGAAAGGAGCTTG CTGAGGCCGTTCAATGAGTGGCATCCCCCCGGGAAGGAGGGAGGGAAGGA GGGAGGGTGGGTGTTGACGCACCATGTGATAGAAGGGGTGAACCACATGG ATATTTGCAATTTTCGAGGCTTTTTCAGGGTCTTGACCGATATATTGGGG AACCATGTGGACAGAACCTTGCGGCCGGAATCGGACGCGCTGGAAACGTC ACCCGACGCCTGGAAGACGAGAATGAAGCAGCGCTGGGCGCCGATCGAGG CGGCCTTGGATGCCGCAGAGGAGATGGTCTTTGGTCCTTAG back to top
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