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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:360115..362375 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01010.1 vs.
Match: EWM23307.1 (lysine-specific demethylase 8 [Nannochloropsis gaditana]) HSP 1 Score: 540.8 bits (1392), Expect = 4.600e-150 Identity = 286/497 (57.55%), Postives = 346/497 (69.62%), Query Frame = 0
Query: 40 AWRVVIQSPPGLLKALTQEGALLCASLCAKVREAIQAKHWTEVKTLGKELQEVSWESLHSGAAWREVTVTIRRAYAHSQFVLAAAEIVQMQQDGYSDT----------AETCLKECMRRLDMALLMGPPDIQAEANGLIDWVQDEL-------LQHLPQKPLLPARKRFRPSKARINDEEDDIPRLACPSLHAFLDQHIKPQVPVILTDGLEHWPALKLWRDLNYLKRVAGQRVVPVEVGTGTYLTAETEEEGEDEEGGEWGQQLMPLTDFIERYVVDACSEVDGGEGEFGRESVKNLMVSGADAKLEYTSGGGEGEGIGRDVGKIEGKTNRALRDKRKKKGYLAQHELFEQVAALKKDIYVPDYCALEVDEEGEE--EEDGQVILHAWFGPGGTVSPTHTDPYHNLLAQVVGSKAVRLFAPSQSPYLYAHEGLLNNNSRVNVQKPDLEKFPLFAQAKSQRCVLKEGEMLYIPPLWWHHIESLETSFSVSFWWGRRR 518
AWR+ ++ P L + L QEG+LLC SLCA +IQA WT V+ LG+EL+EV+WE LHS AWR+VTVT RR YA+SQF+LAA + V+ QQ+ +DT T LKEC+RR+DMALLMGPP I+ ANGLI+W + L Q L +P KR RP + + D IPRLACPSL AFL++H+ PQVPVILT +EHWPAL+ WRD++YLK VAG+RVVPVEVG+GTY+ E E G +EEG WGQ+LMPL DFI+RY+ A S + EG+ S G G D G++E A R + + YLAQHELFEQ+ AL+KD++VPDYCALEV E GEE EEDG V+ +AWFGPGGTVSPTHTDPYHNLLAQVVGSKAVRLFAPS+SP LY +GLL NNSRV+ +PDL +FPLFA+A SQ CVL+EGEMLYIPPLWWHHI++L SFSVSFWWGRRR
Sbjct: 9 AWRIALEEPHELCQDLRQEGSLLCGSLCAGCTNSIQAGDWTTVEALGRELEEVAWEGLHSSPAWRDVTVTTRRVYAYSQFILAAVQAVKFQQEEDTDTNTSTQKRSSVVSTRLKECIRRIDMALLMGPPSIKGVANGLIEWAEQRLRPCKPEAAQFLSSRPRELRVKRPRPVEGLVGD----IPRLACPSLDAFLEKHMVPQVPVILTQCMEHWPALRRWRDMDYLKEVAGERVVPVEVGSGTYMAGEGE--GLEEEGA-WGQELMPLGDFIDRYMTGAESGPESREGD--------------------ASSAGPGGQTWADGGEVE-----AGRRETGCRAYLAQHELFEQIPALQKDVWVPDYCALEV-EGGEEALEEDGLVVTNAWFGPGGTVSPTHTDPYHNLLAQVVGSKAVRLFAPSESPCLYPCQGLLRNNSRVDPLRPDLARFPLFARANSQTCVLEEGEMLYIPPLWWHHIQALSPSFSVSFWWGRRR 472
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01010.1 ID=NO18G01010.1|Name=NO18G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp TGTCACTAGCCTCTTTTATTTAATCCTCATTCGTTCCTATTCGCACTCTC CCGGCGTGTCGCCTGCATCCGTCTACCCTCATCTTAACCCTTGCTGTTCA GGCGTGAGCCCCCCGGGATTACAGGCATCGCATGAAACATATCCGAAGCC TTGACACCTCAAGCACTTATATCTTTCAAAGACTGCACCGTTTTTCTTAT CGATACCCGTGCCTGCACAAGTGGGGCAATCGATCGCGCCTTTCCTATTG CAGACCTTGCAAGAAGCGATGCGGGCCTTGACCTTTTTGGGGTCTTCCTT GTTGCCACCGCTGGCACTGGGCTGCTTCTTATTGCCACCAAAGAGCCCCC AAAAGACTTTTAATCTGTCCTTGCGTGCAAGAGCAGTAGAGGTCGGAAAG GAGGGGACGGGTGTCACTAGGAAGGAGGATGGCGCTGTTGCTCCACGGGC TGCTGCCGCGTTTGGAAAAGAAAATGGAAGGCAAATGCAAATGAACAACA GCATGAGAGCACGCAGTTTTCTTGAGAAGCCGTACATCTTCCTGTACATA GAGGGCGTATTTGGTGCTTAGAAGAGAGTGGGTGCATGTGCATTGTGGCC ATGCGGGTTCCGACAGCAGATGTCTCCAGAGGGCTCCTTGCTTCCTTGTC CACACGCCCTTACTCATGCAATCTTTTCAATCCACGACCCGTGCTACATG AAACAGGACGACATGTCATTTGAGCTTCTACCGTCAGCCTGGAGAGTCGT TATTCAGTCACCGCCAGGACTACTCAAAGCTCTCACACAAGAAGGGGCAT TGCTTTGTGCATCATTGTGTGCTAAAGTTAGAGAGGCTATCCAGGCCAAA CATTGGACGGAGGTGAAGACCTTGGGGAAAGAGCTACAAGAGGTGTCTTG GGAGAGTCTCCACAGTGGGGCAGCCTGGAGGGAGGTCACAGTGACCATCA GAAGGGCATATGCGCATTCCCAATTTGTCCTAGCGGCCGCCGAAATTGTG CAAATGCAGCAAGATGGATATAGCGACACTGCAGAGACGTGCCTGAAAGA ATGCATGCGCCGTTTGGACATGGCCCTATTAATGGGACCCCCAGACATTC AAGCAGAAGCCAACGGTCTGATCGACTGGGTTCAAGACGAACTCCTCCAG CACCTGCCACAGAAGCCTTTGTTACCAGCACGGAAACGATTTCGTCCTTC CAAAGCCCGAATCAACGATGAAGAGGACGATATCCCCCGCCTGGCCTGCC CCTCCCTTCACGCCTTCCTCGACCAGCACATAAAGCCCCAAGTTCCTGTC ATCCTCACAGATGGCTTAGAGCATTGGCCGGCATTAAAGTTATGGCGAGA TTTGAATTACTTGAAACGCGTGGCAGGGCAGCGGGTTGTCCCGGTGGAGG TGGGCACAGGGACGTACCTGACGGCTGAGACCGAGGAGGAGGGGGAAGAC GAGGAAGGAGGAGAATGGGGGCAGCAGCTTATGCCCCTGACGGATTTTAT CGAACGGTACGTGGTGGATGCTTGTTCTGAGGTGGATGGAGGAGAAGGAG AGTTTGGAAGGGAGTCAGTGAAAAACTTGATGGTGAGTGGTGCTGATGCG AAGTTAGAATATACAAGTGGAGGAGGAGAAGGAGAAGGAATAGGAAGAGA TGTCGGAAAGATAGAAGGTAAGACTAATCGGGCCCTACGTGACAAAAGGA AGAAGAAAGGATATCTGGCCCAGCACGAATTATTCGAGCAGGTCGCAGCC TTAAAGAAAGACATTTATGTCCCTGATTACTGCGCTCTGGAGGTGGATGA GGAGGGCGAGGAGGAGGAGGACGGTCAGGTGATCCTCCACGCTTGGTTTG GACCTGGAGGCACTGTCTCGCCGACGCACACTGACCCTTATCATAACCTG CTAGCTCAAGTCGTGGGCTCCAAGGCCGTAAGACTTTTCGCGCCTTCGCA GTCTCCTTACCTGTATGCGCATGAAGGCTTATTAAATAACAATAGCAGGG TAAATGTTCAAAAGCCAGACCTGGAAAAATTTCCATTATTCGCCCAAGCA AAGAGTCAGAGGTGCGTGCTGAAGGAGGGGGAGATGCTGTATATACCGCC GTTGTGGTGGCATCACATCGAGAGCTTGGAAACGTCGTTTTCGGTGTCGT TTTGGTGGGGGCGACGGAGGGGATGA back to topprotein sequence of NO18G01010.1 >NO18G01010.1-protein ID=NO18G01010.1-protein|Name=NO18G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp MSPEGSLLPCPHALTHAIFSIHDPCYMKQDDMSFELLPSAWRVVIQSPPG LLKALTQEGALLCASLCAKVREAIQAKHWTEVKTLGKELQEVSWESLHSG AAWREVTVTIRRAYAHSQFVLAAAEIVQMQQDGYSDTAETCLKECMRRLD MALLMGPPDIQAEANGLIDWVQDELLQHLPQKPLLPARKRFRPSKARIND EEDDIPRLACPSLHAFLDQHIKPQVPVILTDGLEHWPALKLWRDLNYLKR VAGQRVVPVEVGTGTYLTAETEEEGEDEEGGEWGQQLMPLTDFIERYVVD ACSEVDGGEGEFGRESVKNLMVSGADAKLEYTSGGGEGEGIGRDVGKIEG KTNRALRDKRKKKGYLAQHELFEQVAALKKDIYVPDYCALEVDEEGEEEE DGQVILHAWFGPGGTVSPTHTDPYHNLLAQVVGSKAVRLFAPSQSPYLYA HEGLLNNNSRVNVQKPDLEKFPLFAQAKSQRCVLKEGEMLYIPPLWWHHI ESLETSFSVSFWWGRRRG* back to topmRNA from alignment at chr18:360115..362375+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01010.1 ID=NO18G01010.1|Name=NO18G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2261bp|location=Sequence derived from alignment at chr18:360115..362375+ (Nannochloropsis oceanica) TGTCACTAGCCTCTTTTATTTAATCCTCATTCGTTCCTATTCGCACTCTC
CCGGCGTGTCGCCTGCATCCGTCTACCCTCATCTTAACCCTTGCTGTTCA
GGCGTGAGCCCCCCGGGATTACAGGCATCGCATGAAACATATCCGAAGCC
TTGACACCTCAAGCACTTATATCTTTCAAAGACTGCACCGTTTTTCTTAT
CGATACCCGTGCCTGCACAAGTGGGGCAATCGATCGCGCCTTTCCTATTG
CAGACCTTGCAAGAAGCGATGCGGGCCTTGACCTTTTTGGGGTCTTCCTT
GTTGCCACCGCTGGCACTGGGCTGCTTCTTATTGCCACCAAAGAGCCCCC
AAAAGACTTTTAATCTGTCCTTGCGTGCAAGAGCAGTAGAGGTCGGAAAG
GAGGGGACGGGTGTCACTAGGAAGGAGGATGGCGCTGTTGCTCCACGGGC
TGCTGCCGCGTTTGGAAAAGAAAATGGAAGGCAAATGCAAATGAACAACA
GCATGAGAGCACGCAGTTTTCTTGAGAAGCCGTACATCTTCCTGTACATA
GAGGGCGTATTTGGTGCTTAGAAGAGAGTGGGTGCATGTGCATTGTGGCC
ATGCGGGTTCCGACAGCAGATGTCTCCAGAGGGCTCCTTGCTTCCTTGTC
CACACGCCCTTACTCATGCAATCTTTTCAATCCACGACCCGTGCTACATG
AAACAGGACGACATGTCATTTGAGCTTCTACCGTCAGCCTGGAGAGTCGT
TATTCAGTCACCGCCAGGACTACTCAAAGGTAAAGATGCTCTTCCCCAAA
ATCAACCTCCCCCCATTATTATTGCTTGCCTTGCCTCAACCCATTCCTTT
TCCTACAATCCAAGCTCTCACACAAGAAGGGGCATTGCTTTGTGCATCAT
TGTGTGCTAAAGTTAGAGAGGCTATCCAGGCCAAACATTGGACGGAGGTG
AAGACCTTGGGGAAAGAGCTACAAGAGGTGTCTTGGGAGAGTCTCCACAG
TGGGGCAGCCTGGAGGGAGGTCACAGTGACCATCAGAAGGGCATATGCGC
ATTCCCAATTTGTCCTAGCGGCCGCCGAAATTGTGCAAATGCAGCAAGAT
GGATATAGCGACACTGCAGAGACGTGCCTGAAAGAATGCATGCGCCGTTT
GGACATGGCCCTATTAATGGGACCCCCAGACATTCAAGCAGAAGCCAACG
GTCTGATCGACTGGGTTCAAGACGAACTCCTCCAGCACCTGCCACAGAAG
CCTTTGTTACCAGCACGGAAACGATTTCGTCCTTCCAAAGCCCGAATCAA
CGATGAAGAGGACGATATCCCCCGCCTGGCCTGCCCCTCCCTTCACGCCT
TCCTCGACCAGCACATAAAGCCCCAAGTTCCTGTCATCCTCACAGATGGC
TTAGAGCATTGGCCGGCATTAAAGTTATGGCGAGATTTGAATTACTTGAA
ACGCGTGGCAGGGCAGCGGGTTGTCCCGGTGGAGGTGGGCACAGGGACGT
ACCTGACGGCTGAGACCGAGGAGGAGGGGGAAGACGAGGAAGGAGGAGAA
TGGGGGCAGCAGCTTATGCCCCTGACGGATTTTATCGAACGGTACGTGGT
GGATGCTTGTTCTGAGGTGGATGGAGGAGAAGGAGAGTTTGGAAGGGAGT
CAGTGAAAAACTTGATGGTGAGTGGTGCTGATGCGAAGTTAGAATATACA
AGTGGAGGAGGAGAAGGAGAAGGAATAGGAAGAGATGTCGGAAAGATAGA
AGGTAAGACTAATCGGGCCCTACGTGACAAAAGGAAGAAGAAAGGATATC
TGGCCCAGCACGAATTATTCGAGCAGGTCGCAGCCTTAAAGAAAGACATT
TATGTCCCTGATTACTGCGCTCTGGAGGTGGATGAGGAGGGCGAGGAGGA
GGAGGACGGTCAGGTGATCCTCCACGCTTGGTTTGGACCTGGAGGCACTG
TCTCGCCGACGCACACTGACCCTTATCATAACCTGCTAGCTCAAGTCGTG
GGCTCCAAGGCCGTAAGACTTTTCGCGCCTTCGCAGTCTCCTTACCTGTA
TGCGCATGAAGGCTTATTAAATAACAATAGCAGGGTAAATGTTCAAAAGC
CAGACCTGGAAAAATTTCCATTATTCGCCCAAGCAAAGAGTCAGAGGTGC
GTGCTGAAGGAGGGGGAGATGCTGTATATACCGCCGTTGTGGTGGCATCA
CATCGAGAGCTTGGAAACGTCGTTTTCGGTGTCGTTTTGGTGGGGGCGAC
GGAGGGGATGA back to topCoding sequence (CDS) from alignment at chr18:360115..362375+ >NO18G01010.1 ID=NO18G01010.1|Name=NO18G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr18:360115..362375+ (Nannochloropsis oceanica) ATGTCTCCAGAGGGCTCCTTGCTTCCTTGTCCACACGCCCTTACTCATGC AATCTTTTCAATCCACGACCCGTGCTACATGAAACAGGACGACATGTCAT TTGAGCTTCTACCGTCAGCCTGGAGAGTCGTTATTCAGTCACCGCCAGGA CTACTCAAAGCTCTCACACAAGAAGGGGCATTGCTTTGTGCATCATTGTG TGCTAAAGTTAGAGAGGCTATCCAGGCCAAACATTGGACGGAGGTGAAGA CCTTGGGGAAAGAGCTACAAGAGGTGTCTTGGGAGAGTCTCCACAGTGGG GCAGCCTGGAGGGAGGTCACAGTGACCATCAGAAGGGCATATGCGCATTC CCAATTTGTCCTAGCGGCCGCCGAAATTGTGCAAATGCAGCAAGATGGAT ATAGCGACACTGCAGAGACGTGCCTGAAAGAATGCATGCGCCGTTTGGAC ATGGCCCTATTAATGGGACCCCCAGACATTCAAGCAGAAGCCAACGGTCT GATCGACTGGGTTCAAGACGAACTCCTCCAGCACCTGCCACAGAAGCCTT TGTTACCAGCACGGAAACGATTTCGTCCTTCCAAAGCCCGAATCAACGAT GAAGAGGACGATATCCCCCGCCTGGCCTGCCCCTCCCTTCACGCCTTCCT CGACCAGCACATAAAGCCCCAAGTTCCTGTCATCCTCACAGATGGCTTAG AGCATTGGCCGGCATTAAAGTTATGGCGAGATTTGAATTACTTGAAACGC GTGGCAGGGCAGCGGGTTGTCCCGGTGGAGGTGGGCACAGGGACGTACCT GACGGCTGAGACCGAGGAGGAGGGGGAAGACGAGGAAGGAGGAGAATGGG GGCAGCAGCTTATGCCCCTGACGGATTTTATCGAACGGTACGTGGTGGAT GCTTGTTCTGAGGTGGATGGAGGAGAAGGAGAGTTTGGAAGGGAGTCAGT GAAAAACTTGATGGTGAGTGGTGCTGATGCGAAGTTAGAATATACAAGTG GAGGAGGAGAAGGAGAAGGAATAGGAAGAGATGTCGGAAAGATAGAAGGT AAGACTAATCGGGCCCTACGTGACAAAAGGAAGAAGAAAGGATATCTGGC CCAGCACGAATTATTCGAGCAGGTCGCAGCCTTAAAGAAAGACATTTATG TCCCTGATTACTGCGCTCTGGAGGTGGATGAGGAGGGCGAGGAGGAGGAG GACGGTCAGGTGATCCTCCACGCTTGGTTTGGACCTGGAGGCACTGTCTC GCCGACGCACACTGACCCTTATCATAACCTGCTAGCTCAAGTCGTGGGCT CCAAGGCCGTAAGACTTTTCGCGCCTTCGCAGTCTCCTTACCTGTATGCG CATGAAGGCTTATTAAATAACAATAGCAGGGTAAATGTTCAAAAGCCAGA CCTGGAAAAATTTCCATTATTCGCCCAAGCAAAGAGTCAGAGGTGCGTGC TGAAGGAGGGGGAGATGCTGTATATACCGCCGTTGTGGTGGCATCACATC GAGAGCTTGGAAACGTCGTTTTCGGTGTCGTTTTGGTGGGGGCGACGGAG GGGATGA back to top
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