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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr18 | genome | chr18:356738..358474 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G01000.1 vs.
Match: EWM23319.1 (myc-induced nuclear antigen [Nannochloropsis gaditana]) HSP 1 Score: 434.5 bits (1116), Expect = 5.200e-118 Identity = 274/519 (52.79%), Postives = 327/519 (63.01%), Query Frame = 0
Query: 43 QQQRPQLQRPVSSHARLPSTFKPAITQATTSTAADSITTSTTIAPDETLGKILAEAGAGCGKLDLKNVFQALLTAPNSPFLDKYWQREPCYTATSIPCLAQAWTMADMEDAIAREFLLAGRGFFEEEGSKMSGGWKMATVGEARGSSFEDAKLRPEDVRAALAKRSGTVVFNSVGGSVAALAGVCLDAVETFLLPVALNLYLTAPGQATSAPPHTDKQDVFVLQTQGRKRWRVYSPPAPGKKAHVDPFARGKDADNLSLSELGTPLVDMVLGPGQMLYMPAGFPHTTDTVVGMTGEKDSSVHLTLGVDTHIWGLTHATLRDYFLYRLSYNGGSSSGSDMIPPPPPSTLADASAFIQYHSQLPIGAREARAVAGGEGGAERVAPKRWSELKKVLGDAVIEEFKQVICAVDDQDVLASLKEKGGKEEEVLRQVVAKVIDHHRSLTAVFRSMYVDVKFGLTEVPRDLSCLRSQAYYQNIENTMQALVEWAAPPSLPPSPAAAAAGAAGGGGGAGGSKGGFGG 562
+ Q PQ+ R + H P T PA T TA I+T+ +A D+ LG +L EA GC KLDLK VF+AL TAP+SPFL KYWQR PC+T+TSIPCLAQAWTMADME+AIA+EFLLAGRGFFEE +GGWKMA VG ARGSSFE+AKLRPEDVRAAL +RSGTVVFNSVGGSVAALAGVC D + F L +Y APG+ P +D L ++LYMPAGFPHTTDTVVGM E+D SVHLTLGVDTHIWGLTHA LRDYFLYRL ++ +PPPPPST AF+++H+QLP+G REA A G RWS LK+VLG V EF+ V+ ++D+ VL L+E+G E VL +VVA+++DHHRSLT+VFR+MY DVK+GL++V RDLSCLRSQ YYQN+E TMQALV+WAA P+PA GG +K GG
Sbjct: 38 KHQDPQVPR-LPGHC--PLTTLPAAT-----TANAPISTAPVVA-DQALGTLLVEADTGCDKLDLKRVFEAL-TAPSSPFLAKYWQRAPCFTSTSIPCLAQAWTMADMEEAIAKEFLLAGRGFFEENSE--TGGWKMAAVGLARGSSFEEAKLRPEDVRAALKQRSGTVVFNSVGGSVAALAGVC-----------------------------LDAVEAFRLPVA----LNLYMT-APGQSTSAPPHTDKQDVFVLQTQGRKR---------WRVLYMPAGFPHTTDTVVGMAEERDPSVHLTLGVDTHIWGLTHAALRDYFLYRLQPGPTAT-----LPPPPPSTQTLPEAFVRFHAQLPLGLREAAAADAGT---------RWSALKQVLGAGVEAEFQAVMREIEDEHVLQRLEEEGAAE--VLGEVVARLLDHHRSLTSVFRAMYSDVKYGLSDVTRDLSCLRSQPYYQNLETTMQALVDWAA-----PAPAGGRERERKMPGGQRRAKAASGG 480
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G01000.1 ID=NO18G01000.1|Name=NO18G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTGTCGG TGGCTCCGTGGCGGCGCTGGCAGGTGTATGCCTAGATGCCGTCGAGACTT TCCTACTCCCCGTCGCGCTCAACCTCTACCTCACTGCCCCAGGACAAGCC ACTTCCGCGCCCCCGCACACGGACAAACAAGATGTCTTTGTCTTGCAAAC GCAAGGTCGAAAAAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGA AAGCTCATGTGGATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCC CTCTCCGAGCTTGGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCA AATGCTCTACATGCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGG GAATGACCGGAGAGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGAT ACACACATCTGGGGGTTAACCCACGCGACCCTCCGTGACTACTTCCTCTA CCGCCTCAGCTACAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTC CTCCCCCTCCTTCTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCAT AGTCAGTTGCCCATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGA GGGAGGGGCGGAGAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAG TGCTAGGGGACGCCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTG GATGATCAAGATGTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGA AGAGGTGTTGAGGCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCT TGACAGCCGTGTTTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACG GAGGTTCCGAGAGACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAA TATTGAAAATACCATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCC TCCCTCCTTCCCCTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGG GGAGCGGGAGGGAGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCC GGCTGGTGGCAAGGGTGGGGGAAAGAAGAAGAAGTAG back to topprotein sequence of NO18G01000.1 >NO18G01000.1-protein ID=NO18G01000.1-protein|Name=NO18G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp MKPLDVPGHYQRRSLRLIPVLLAVFLLLDAPASINAFVVRGLQQQRPQLQ RPVSSHARLPSTFKPAITQATTSTAADSITTSTTIAPDETLGKILAEAGA GCGKLDLKNVFQALLTAPNSPFLDKYWQREPCYTATSIPCLAQAWTMADM EDAIAREFLLAGRGFFEEEGSKMSGGWKMATVGEARGSSFEDAKLRPEDV RAALAKRSGTVVFNSVGGSVAALAGVCLDAVETFLLPVALNLYLTAPGQA TSAPPHTDKQDVFVLQTQGRKRWRVYSPPAPGKKAHVDPFARGKDADNLS LSELGTPLVDMVLGPGQMLYMPAGFPHTTDTVVGMTGEKDSSVHLTLGVD THIWGLTHATLRDYFLYRLSYNGGSSSGSDMIPPPPPSTLADASAFIQYH SQLPIGAREARAVAGGEGGAERVAPKRWSELKKVLGDAVIEEFKQVICAV DDQDVLASLKEKGGKEEEVLRQVVAKVIDHHRSLTAVFRSMYVDVKFGLT EVPRDLSCLRSQAYYQNIENTMQALVEWAAPPSLPPSPAAAAAGAAGGGG GAGGSKGGFGGGGGKKPAGGKGGGKKKK* back to topmRNA from alignment at chr18:356738..358474- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G01000.1 ID=NO18G01000.1|Name=NO18G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at chr18:356738..358474- (Nannochloropsis oceanica) ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT
GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA
TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG
AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT
CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA
CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA
GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC
GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA
CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG
GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA
AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG
AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC
CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTGTCGG
TGGCTCCGTGGCGGCGCTGGCAGGTGTATGCCTAGATGCCGTCGAGACTT
TCCTACTCCCCGTCGCGCTCAACCTCTACCTCACTGCCCCAGGACAAGCC
ACTTCCGCGCCCCCGCACACGGACAAACAAGATGTCTTTGTCTTGCAAAC
GCAAGGTCGAAAAAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGA
AAGCTCATGTGGATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCC
CTCTCCGAGCTTGGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCA
AATGCTCTACATGCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGG
GAATGACCGGAGAGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGAT
ACACACATCTGGGGGTTAACCCACGCGACCCTCCGTGACTACTTCCTCTA
CCGCCTCAGCTACAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTC
CTCCCCCTCCTTCTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCAT
AGTCAGTTGCCCATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGA
GGGAGGGGCGGAGAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAG
TGCTAGGGGACGCCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTG
GATGATCAAGATGTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGA
AGAGGTGTTGAGGCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCT
TGACAGCCGTGTTTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACG
GAGGTTCCGAGAGACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAA
TATTGAAAATACCATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCC
TCCCTCCTTCCCCTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGG
GGAGCGGGAGGGAGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCC
GGCTGGTGGCAAGGGTGGGGGAAAGAAGAAGAAGTAG back to topCoding sequence (CDS) from alignment at chr18:356738..358474- >NO18G01000.1 ID=NO18G01000.1|Name=NO18G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr18:356738..358474- (Nannochloropsis oceanica) ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTGTCGG TGGCTCCGTGGCGGCGCTGGCAGGTGTATGCCTAGATGCCGTCGAGACTT TCCTACTCCCCGTCGCGCTCAACCTCTACCTCACTGCCCCAGGACAAGCC ACTTCCGCGCCCCCGCACACGGACAAACAAGATGTCTTTGTCTTGCAAAC GCAAGGTCGAAAAAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGA AAGCTCATGTGGATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCC CTCTCCGAGCTTGGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCA AATGCTCTACATGCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGG GAATGACCGGAGAGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGAT ACACACATCTGGGGGTTAACCCACGCGACCCTCCGTGACTACTTCCTCTA CCGCCTCAGCTACAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTC CTCCCCCTCCTTCTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCAT AGTCAGTTGCCCATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGA GGGAGGGGCGGAGAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAG TGCTAGGGGACGCCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTG GATGATCAAGATGTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGA AGAGGTGTTGAGGCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCT TGACAGCCGTGTTTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACG GAGGTTCCGAGAGACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAA TATTGAAAATACCATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCC TCCCTCCTTCCCCTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGG GGAGCGGGAGGGAGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCC GGCTGGTGGCAAGGGTGGGGGAAAGAAGAAGAAGTAG back to top
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