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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:308851..311681 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G00800.1 vs.
Match: EWM23286.1 (hypothetical protein Naga_100158g4 [Nannochloropsis gaditana]) HSP 1 Score: 802.7 bits (2072), Expect = 6.900e-229 Identity = 397/553 (71.79%), Postives = 473/553 (85.53%), Query Frame = 0
Query: 1 MRRVAMGAMALASLSAYSTAARVEECLIPSTYSVSKDYFPAAAGATVDEARKFTIEYVQGYKVVTNLKGKRQYILYPCGAPEPDVAGLTTPEGFERRFLSVPAQKVVTAETVSYDFLNLLQNDQTEMGVTDRVIALSSYSSDACAQKALSCSSNVMAPGVSAASPGWGAKAEEFDAVMKEAGVYFDYSETYEGTATKDKTVIFSATSETSLLGRGEWIKFVGAFFNLDGVAEQKFEETKETYYKLSDAAKSENDARPKVSFLQVDTFGDKIVDYYGISVAGYKRSAVLDAGGWIANLEDFVGLPGVNFTTAMSTARWEVPKAAGPERDAAIKAFTEHLKDTDILIDERYSSTTLTRDEALAAYGLTSADVEFPFIKNGKFFRQDKTGSASGSAWFETGVSRPDVVLMDFIKVVHPTTSLVAKHDTVFLRDLFKGEEKKVITAEECTRGYPVCGLALTDKAAAICPSDSFKTCSNGSKVFLSTASGCTKYKSCPMKSLSEYTGLPTSSNIILGVFLSLAGLLLLACGFMWGKKRVAARAGSNGLSP--NAASMH 552
M RVA GAMALASLSAY++A VEECL P+T+S SKDYFP+AAGATVDEARKFTIEY QGYKVVTN GKRQY+LY CGAPEPDV+ LT P G+ERR LSVPAQK VTAETVSYDFLNLLQND+T+MGVTDR+I+LS YS DACAQKAL+CS+NVM+PG++AA PGWGAK EE+DA+M EA VYFD+SE+Y+GT DKTVIFSATSETSLLGRGEW+KF AFFNLDGVAEQKF+ T+E YY+LSDAAK+ N +RPKVSF+ VDT+GD VDY+ I VAGYKRSAVLDAGG+IAN+EDFVG P V+F + M ARW VPK AG ER+AAIKAF +LKDTDILIDERYS + L+RDE+LAAYGL+ D+E+PFI +GK +R+D+TGSA+GSAWFE+GVSRPD+VLMDFIKV+ P+T VA H+ VFLRDL +GE K+V+TA EC RGYPVCGL+L DKAAAICPSD FKTCS+GSKVFL+ +S CT++++CPM+S+S+YTGLP SSNIIL VF+S GL+L+A GF +G+K+ A GL+P NAA++H
Sbjct: 1 MHRVAFGAMALASLSAYTSAGSVEECLAPATFSASKDYFPSAAGATVDEARKFTIEYDQGYKVVTNKAGKRQYVLYRCGAPEPDVSALTLPAGYERRILSVPAQKAVTAETVSYDFLNLLQNDKTDMGVTDRLISLSPYSVDACAQKALTCSNNVMSPGLNAAVPGWGAKPEEYDALMNEANVYFDFSESYKGTGATDKTVIFSATSETSLLGRGEWLKFAAAFFNLDGVAEQKFDRTREKYYELSDAAKA-NPSRPKVSFVNVDTYGDSTVDYFMIDVAGYKRSAVLDAGGYIANVEDFVGAPNVSFPSTMRAARWAVPKEAGAEREAAIKAFAANLKDTDILIDERYSPSVLSRDESLAAYGLSGNDMEYPFIAHGKLYREDRTGSATGSAWFESGVSRPDIVLMDFIKVIQPSTPAVASHERVFLRDLAQGETKQVVTAAECERGYPVCGLSLADKAAAICPSDQFKTCSDGSKVFLTPSSDCTRFQACPMRSMSDYTGLPASSNIILAVFMSFVGLVLIAAGFYFGRKK-ARTTSPGGLTPNGNAATLH 551
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G00800.1 ID=NO18G00800.1|Name=NO18G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2831bp
TCGAAAGTCGCATCGCTTCGTGTTCTCTCCCATCTCCGGCGGCGCAATGA
ACCGGCTGCCTGGCTCTTCTAATAGTTGTGGTGCCCTTGTCGTCCTGCTC
TTCATGATTTTCCGGATATGTCCTCTAGTTATGAAACAATGCTCTCATTA
ACCCAGCTCTCTGCTACTGTGTGTACGGCACGACGCGCACGTCATGCACA
AGGTCGCTTATTCGCGGGGGCCCATACCGCGTCTCCACAGATACCAACTC
TTATCTTATTGCAACCAGTCACACAAATAAATCTGCGTGTGCTTACCGGT
CCAAGTGCTCCTCCTGCATTACCGCGTCCTTTTCAGCCAGCTCCAGGCCA
CCCATCTACACCCGCCCTTCGATCCCTAAGCGATGTCGTGATAACGAGCG
TGGACTTTAAGGGCCATGAGATGGTTATGGGCATCTCTCTCAACGGCCTC
GTGTTCTGCTCTGACTGTCGATGTGTGAGCAGCGATCTTCTTTGCTAGGA
AGGGGGAGCCGTGAACCTGAAGAGGCGAACGCACACACAAATACCCCGCC
TCTACAAACAAGCCTAGCCGCAGCTCTCCCCCTGCCCGCGACCGCCCCAA
GCAAGCACCGTCTGTTCCAAATCCTCTTTTGTCGTCGCCACGAAACTGAC
ATCTTACACTCCTCCCTACCCACCCCGACGCACACAGGCACACGCCACCA
TCACCCCTCCACCTCTCCACCATGCGTCGCGTTGCCATGGGCGCCATGGC
CTTGGCCAGCCTCTCTGCCTACTCCACCGCTGCCCGTGTCGAGGAATGCT
TGATCCCCTCCACTTACAGCGTGTCCAAAGACTACTTCCCCGCTGCCGCC
GGAGCCACCGTGGATGAAGCCCGTAAATTCACCATTGAATACGTGCAAGG
CTACAAGGTCGTCACCAACCTGAAGGGGAAACGTCAATATATCCTCTACC
CCTGCGGAGCTCCAGAGCCGGACGTCGCAGGTCTCACCACCCCCGAGGGC
TTCGAGCGTCGTTTCCTCAGCGTACCTGCCCAGAAGGTGGTGACGGCCGA
AACGGTGTCGTATGATTTTTTGAACTTGCTTCAAAACGACCAGACGGAGA
TGGGGGTGACTGACCGTGTCATCGCCCTCTCCTCCTACTCCTCCGATGCC
TGCGCTCAGAAGGCCTTGAGTTGTTCGTCGAACGTCATGGCTCCTGGTGT
TAGTGCTGCCAGCCCTGGGTGGGGTGCGAAGGCGGAGGAATTCGACGCCG
TGATGAAAGAGGCCGGTGTGTACTTCGATTACTCTGAAACTTACGAAGGC
ACTGCCACCAAGGATAAAACCGTCATTTTCTCGGCAACCTCTGAAACTAG
CCTGTTGGGAAGAGGAGAGTGGATTAAGTTCGTGGGGGCCTTTTTTAATT
TGGACGGGGTGGCGGAGCAGAAGTTTGAAGAGACGAAGGAGACGTACTAT
AAGCTTTCGGATGCGGCGAAGTCTGAGAATGATGCACGGCCCAAGGTGAG
CTTTCTTCAGGTGGATACTTTTGGAGATAAAATAGTTGATTACTACGGGA
TTTCCGTGGCGGGGTACAAGAGATCGGCGGTCTTAGATGCGGGAGGATGG
ATCGCGAATTTGGAGGATTTTGTGGGTTTGCCAGGAGTCAATTTCACTAC
GGCGATGAGTACTGCGAGGTGGGAGGTGCCCAAGGCGGCCGGGCCTGAGA
GGGACGCGGCGATCAAGGCTTTCACAGAGCACTTGAAGGATACGGATATT
TTGATTGATGAACGATATTCTTCTACGACGTTGACGCGCGATGAGGCGTT
GGCGGCGTATGGCTTGACAAGTGCTGATGTCGAGTTTCCCTTCATTAAGA
ATGGGAAGTTCTTCCGTCAAGATAAGACCGGGTCGGCCAGTGGCTCTGCG
TGGTTTGAGACGGGTGTTTCTCGTCCCGATGTCGTCCTGATGGACTTCAT
CAAGGTCGTCCACCCGACCACGTCTCTGGTGGCAAAACACGACACGGTCT
TCCTTCGTGACCTCTTCAAGGGGGAGGAGAAGAAGGTCATCACCGCTGAG
GAGTGCACGCGTGGCTACCCTGTGTGCGGCCTAGCCCTCACTGACAAAGC
TGCTGCCATCTGCCCCAGCGATTCCTTCAAGACCTGCTCTAATGGAAGCA
AGGTCTTCCTGTCCACGGCCTCGGGGTGCACTAAGTACAAGAGCTGCCCG
ATGAAGAGCTTGAGCGAATACACGGGCCTGCCGACGAGCTCCAATATTAT
TTTGGGTGTTTTCCTGTCCCTGGCTGGTCTCCTGTTGCTCGCCTGTGGCT
TTATGTGGGGGAAGAAGCGAGTGGCGGCTCGCGCCGGGTCGAATGGCCTT
TCCCCCAACGCGGCGAGCATGCATTAATTTATTTAGTAATTACTTGTTGG
AGCGTGGGATTGAGTGACGGAAAGAATGTGGGGGAAGTGGGGGAGGGGGG
TTGGAATGAGGGAGGGAGTTGACTTAACTTCTTGGGATACGGCAGTCCTA
ATTTCGCCTTGCGCATTAAGTTCTGGTCCAAGCTTTCGATGAGTCAATTG
AAGTCGCTGGTCCATGACAGAAGAGCGAGGGAGGAGGAAGTGGGAGGGGA
AGGAAGGTCACGGGTGGGTCAGTATATGTGTAGGTATATGTAGTCACCCT
ACATACTCGCAACCATCAACCCTCCCCGTATCTGGAAGGAGAAGAAAAAA
ACGGATACAGAGAGTAAAGAAAAAGACGAATTTGAAGAAGAATGATTTTT
AAAATCACTTTTGATTCTTCAAGGGTGGAAAGAAGGAAAACCAAAGAATC
AAGGCCATTAGAGGACTGTGGTAAAGAGGGG back to topprotein sequence of NO18G00800.1 >NO18G00800.1-protein ID=NO18G00800.1-protein|Name=NO18G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MRRVAMGAMALASLSAYSTAARVEECLIPSTYSVSKDYFPAAAGATVDEA
RKFTIEYVQGYKVVTNLKGKRQYILYPCGAPEPDVAGLTTPEGFERRFLS
VPAQKVVTAETVSYDFLNLLQNDQTEMGVTDRVIALSSYSSDACAQKALS
CSSNVMAPGVSAASPGWGAKAEEFDAVMKEAGVYFDYSETYEGTATKDKT
VIFSATSETSLLGRGEWIKFVGAFFNLDGVAEQKFEETKETYYKLSDAAK
SENDARPKVSFLQVDTFGDKIVDYYGISVAGYKRSAVLDAGGWIANLEDF
VGLPGVNFTTAMSTARWEVPKAAGPERDAAIKAFTEHLKDTDILIDERYS
STTLTRDEALAAYGLTSADVEFPFIKNGKFFRQDKTGSASGSAWFETGVS
RPDVVLMDFIKVVHPTTSLVAKHDTVFLRDLFKGEEKKVITAEECTRGYP
VCGLALTDKAAAICPSDSFKTCSNGSKVFLSTASGCTKYKSCPMKSLSEY
TGLPTSSNIILGVFLSLAGLLLLACGFMWGKKRVAARAGSNGLSPNAASM
H* back to topmRNA from alignment at chr18:308851..311681- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G00800.1 ID=NO18G00800.1|Name=NO18G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2831bp|location=Sequence derived from alignment at chr18:308851..311681- (Nannochloropsis oceanica)
TCGAAAGTCGCATCGCTTCGTGTTCTCTCCCATCTCCGGCGGCGCAATGA
ACCGGCTGCCTGGCTCTTCTAATAGTTGTGGTGCCCTTGTCGTCCTGCTC
TTCATGATTTTCCGGATATGTCCTCTAGTTATGAAACAATGCTCTCATTA
ACCCAGCTCTCTGCTACTGTGTGTACGGCACGACGCGCACGTCATGCACA
AGGTCGCTTATTCGCGGGGGCCCATACCGCGTCTCCACAGATACCAACTC
TTATCTTATTGCAACCAGTCACACAAATAAATCTGCGTGTGCTTACCGGT
CCAAGTGCTCCTCCTGCATTACCGCGTCCTTTTCAGCCAGCTCCAGGCCA
CCCATCTACACCCGCCCTTCGATCCCTAAGCGATGTCGTGATAACGAGCG
TGGACTTTAAGGGCCATGAGATGGTTATGGGCATCTCTCTCAACGGCCTC
GTGTTCTGCTCTGACTGTCGATGTGTGAGCAGCGATCTTCTTTGCTAGGA
AGGGGGAGCCGTGAACCTGAAGAGGCGAACGCACACACAAATACCCCGCC
TCTACAAACAAGCCTAGCCGCAGCTCTCCCCCTGCCCGCGACCGCCCCAA
GCAAGCACCGTCTGTTCCAAATCCTCTTTTGTCGTCGCCACGAAACTGAC
ATCTTACACTCCTCCCTACCCACCCCGACGCACACAGGCACACGCCACCA
TCACCCCTCCACCTCTCCACCATGCGTCGCGTTGCCATGGGCGCCATGGC
CTTGGCCAGCCTCTCTGCCTACTCCACCGCTGCCCGTGTCGAGGAATGCT
TGATCCCCTCCACTTACAGCGTGTCCAAAGACTACTTCCCCGCTGCCGCC
GGAGCCACCGTGGATGAAGCCCGTAAATTCACCATTGAATACGTGCAAGG
CTACAAGGTCGTCACCAACCTGAAGGGGAAACGTCAATATATCCTCTACC
CCTGCGGAGCTCCAGAGCCGGACGTCGCAGGTCTCACCACCCCCGAGGGC
TTCGAGCGTCGTTTCCTCAGCGTACCTGCCCAGAAGGTGGTGACGGCCGA
AACGGTGTCGTATGATTTTTTGAACTTGCTTCAAAACGACCAGACGGAGA
TGGGGGTGACTGACCGTGTCATCGCCCTCTCCTCCTACTCCTCCGATGCC
TGCGCTCAGAAGGCCTTGAGTTGTTCGTCGAACGTCATGGCTCCTGGTGT
TAGTGCTGCCAGCCCTGGGTGGGGTGCGAAGGCGGAGGAATTCGACGCCG
TGATGAAAGAGGCCGGTGTGTACTTCGATTACTCTGAAACTTACGAAGGC
ACTGCCACCAAGGATAAAACCGTCATTTTCTCGGCAACCTCTGAAACTAG
CCTGTTGGGAAGAGGAGAGTGGATTAAGTTCGTGGGGGCCTTTTTTAATT
TGGACGGGGTGGCGGAGCAGAAGTTTGAAGAGACGAAGGAGACGTACTAT
AAGCTTTCGGATGCGGCGAAGTCTGAGAATGATGCACGGCCCAAGGTGAG
CTTTCTTCAGGTGGATACTTTTGGAGATAAAATAGTTGATTACTACGGGA
TTTCCGTGGCGGGGTACAAGAGATCGGCGGTCTTAGATGCGGGAGGATGG
ATCGCGAATTTGGAGGATTTTGTGGGTTTGCCAGGAGTCAATTTCACTAC
GGCGATGAGTACTGCGAGGTGGGAGGTGCCCAAGGCGGCCGGGCCTGAGA
GGGACGCGGCGATCAAGGCTTTCACAGAGCACTTGAAGGATACGGATATT
TTGATTGATGAACGATATTCTTCTACGACGTTGACGCGCGATGAGGCGTT
GGCGGCGTATGGCTTGACAAGTGCTGATGTCGAGTTTCCCTTCATTAAGA
ATGGGAAGTTCTTCCGTCAAGATAAGACCGGGTCGGCCAGTGGCTCTGCG
TGGTTTGAGACGGGTGTTTCTCGTCCCGATGTCGTCCTGATGGACTTCAT
CAAGGTCGTCCACCCGACCACGTCTCTGGTGGCAAAACACGACACGGTCT
TCCTTCGTGACCTCTTCAAGGGGGAGGAGAAGAAGGTCATCACCGCTGAG
GAGTGCACGCGTGGCTACCCTGTGTGCGGCCTAGCCCTCACTGACAAAGC
TGCTGCCATCTGCCCCAGCGATTCCTTCAAGACCTGCTCTAATGGAAGCA
AGGTCTTCCTGTCCACGGCCTCGGGGTGCACTAAGTACAAGAGCTGCCCG
ATGAAGAGCTTGAGCGAATACACGGGCCTGCCGACGAGCTCCAATATTAT
TTTGGGTGTTTTCCTGTCCCTGGCTGGTCTCCTGTTGCTCGCCTGTGGCT
TTATGTGGGGGAAGAAGCGAGTGGCGGCTCGCGCCGGGTCGAATGGCCTT
TCCCCCAACGCGGCGAGCATGCATTAATTTATTTAGTAATTACTTGTTGG
AGCGTGGGATTGAGTGACGGAAAGAATGTGGGGGAAGTGGGGGAGGGGGG
TTGGAATGAGGGAGGGAGTTGACTTAACTTCTTGGGATACGGCAGTCCTA
ATTTCGCCTTGCGCATTAAGTTCTGGTCCAAGCTTTCGATGAGTCAATTG
AAGTCGCTGGTCCATGACAGAAGAGCGAGGGAGGAGGAAGTGGGAGGGGA
AGGAAGGTCACGGGTGGGTCAGTATATGTGTAGGTATATGTAGTCACCCT
ACATACTCGCAACCATCAACCCTCCCCGTATCTGGAAGGAGAAGAAAAAA
ACGGATACAGAGAGTAAAGAAAAAGACGAATTTGAAGAAGAATGATTTTT
AAAATCACTTTTGATTCTTCAAGGGTGGAAAGAAGGAAAACCAAAGAATC
AAGGCCATTAGAGGACTGTGGTAAAGAGGGG back to topCoding sequence (CDS) from alignment at chr18:308851..311681- >NO18G00800.1 ID=NO18G00800.1|Name=NO18G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at chr18:308851..311681- (Nannochloropsis oceanica)
ATGCGTCGCGTTGCCATGGGCGCCATGGCCTTGGCCAGCCTCTCTGCCTA
CTCCACCGCTGCCCGTGTCGAGGAATGCTTGATCCCCTCCACTTACAGCG
TGTCCAAAGACTACTTCCCCGCTGCCGCCGGAGCCACCGTGGATGAAGCC
CGTAAATTCACCATTGAATACGTGCAAGGCTACAAGGTCGTCACCAACCT
GAAGGGGAAACGTCAATATATCCTCTACCCCTGCGGAGCTCCAGAGCCGG
ACGTCGCAGGTCTCACCACCCCCGAGGGCTTCGAGCGTCGTTTCCTCAGC
GTACCTGCCCAGAAGGTGGTGACGGCCGAAACGGTGTCGTATGATTTTTT
GAACTTGCTTCAAAACGACCAGACGGAGATGGGGGTGACTGACCGTGTCA
TCGCCCTCTCCTCCTACTCCTCCGATGCCTGCGCTCAGAAGGCCTTGAGT
TGTTCGTCGAACGTCATGGCTCCTGGTGTTAGTGCTGCCAGCCCTGGGTG
GGGTGCGAAGGCGGAGGAATTCGACGCCGTGATGAAAGAGGCCGGTGTGT
ACTTCGATTACTCTGAAACTTACGAAGGCACTGCCACCAAGGATAAAACC
GTCATTTTCTCGGCAACCTCTGAAACTAGCCTGTTGGGAAGAGGAGAGTG
GATTAAGTTCGTGGGGGCCTTTTTTAATTTGGACGGGGTGGCGGAGCAGA
AGTTTGAAGAGACGAAGGAGACGTACTATAAGCTTTCGGATGCGGCGAAG
TCTGAGAATGATGCACGGCCCAAGGTGAGCTTTCTTCAGGTGGATACTTT
TGGAGATAAAATAGTTGATTACTACGGGATTTCCGTGGCGGGGTACAAGA
GATCGGCGGTCTTAGATGCGGGAGGATGGATCGCGAATTTGGAGGATTTT
GTGGGTTTGCCAGGAGTCAATTTCACTACGGCGATGAGTACTGCGAGGTG
GGAGGTGCCCAAGGCGGCCGGGCCTGAGAGGGACGCGGCGATCAAGGCTT
TCACAGAGCACTTGAAGGATACGGATATTTTGATTGATGAACGATATTCT
TCTACGACGTTGACGCGCGATGAGGCGTTGGCGGCGTATGGCTTGACAAG
TGCTGATGTCGAGTTTCCCTTCATTAAGAATGGGAAGTTCTTCCGTCAAG
ATAAGACCGGGTCGGCCAGTGGCTCTGCGTGGTTTGAGACGGGTGTTTCT
CGTCCCGATGTCGTCCTGATGGACTTCATCAAGGTCGTCCACCCGACCAC
GTCTCTGGTGGCAAAACACGACACGGTCTTCCTTCGTGACCTCTTCAAGG
GGGAGGAGAAGAAGGTCATCACCGCTGAGGAGTGCACGCGTGGCTACCCT
GTGTGCGGCCTAGCCCTCACTGACAAAGCTGCTGCCATCTGCCCCAGCGA
TTCCTTCAAGACCTGCTCTAATGGAAGCAAGGTCTTCCTGTCCACGGCCT
CGGGGTGCACTAAGTACAAGAGCTGCCCGATGAAGAGCTTGAGCGAATAC
ACGGGCCTGCCGACGAGCTCCAATATTATTTTGGGTGTTTTCCTGTCCCT
GGCTGGTCTCCTGTTGCTCGCCTGTGGCTTTATGTGGGGGAAGAAGCGAG
TGGCGGCTCGCGCCGGGTCGAATGGCCTTTCCCCCAACGCGGCGAGCATG
CATTAA back to top
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