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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr18 | genome | chr18:210269..213534 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO18G00510.1 vs.
Match: XP_009158590.1 (hypothetical protein HMPREF1120_06147 [Exophiala dermatitidis NIH/UT8656]; EHY58129.1 hypothetical protein HMPREF1120_06147 [Exophiala dermatitidis NIH/UT8656]) HSP 1 Score: 201.1 bits (510), Expect = 7.000e-48 Identity = 149/387 (38.50%), Postives = 208/387 (53.75%), Query Frame = 0
Query: 33 QRVISASVGSLLTSLVTNPLDVVKTRVQTSYIPPPSATTTAAAAATA---------MDGACQDMY----------------AIETVHGAKVSYTKSTSEVVYRGTADGLIKIFRQEGLAGWYRGLSPSLAMAVPSTVLYYSLYDSLR---AALGREEA--LLAPLLAGSTARICAATATAPLELLRTRAQAESRAGLGLLE----GMRGITSASGSVWSLWHGLGAQLWRDVPFSAMYWLGYERILLAM-------------------GGR--REDEKQLTHMLKSFTAGAGAGMASAYLTTPFDVIKTRRQVAPMASSLAAEAAVSRSRASS--------SMQAALRCVLAAEGVRGLFRGAIPRTLRIGLACAIMISTYEGGKHY 357
QR+ISA+ GSLLTSL+ PLDVV+ R+Q+ +IP P + A +T+ ++ C++++ A + A + T + + T DGL KI R EG +RGLSP+L MA+P+ V+Y++ YD LR A+ R+ + APL+AGS ARI AA A +P+E+ RTR QA + G+ + G+ +T G SLW GL +WRDVPFSA+YW GYE I + GGR ++ E T + SF AGAG+G +A++TTPFDV KTR+QV A A+ A +R A SM L +L EG+RGLF+G R L++ ACAIMIS+YE GK +
Sbjct: 13 QRMISATWGSLLTSLLVTPLDVVRVRLQSQHIPKPMNLSKFPAYSTSFKQLPPDLGVNSCCREVFWLGHNGEYCIAGGGSGAQSSSAAAADCAVEETQKRTFNSTLDGLRKIARNEGYLTLWRGLSPTLVMAIPANVIYFTGYDWLRYHHASPIRKVSNDTYAPLVAGSIARIAAAVAVSPIEMFRTRMQATHGSATGVFKDTMLGLHRMTQTHGYT-SLWRGLTLTMWRDVPFSAIYWWGYEAIRNELTDAREAVRGHKLNPDRSMTGGRAAQDHENHTTTFIDSFIAGAGSGAVAAFVTTPFDVGKTRQQVHHHAGDDASSRAAAREIAKQGKHIPEELSMPRFLYHILKEEGMRGLFKGWAARCLKVAPACAIMISSYEVGKKW 398
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO18G00510.1 ID=NO18G00510.1|Name=NO18G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp
ACAGCTGCATCCACAGGCGTGCAGGGACCATAAGATGGAGGAGGAGACGG
TCGTCGTCGGGGACTGCTGTGAAGACGAGGAGCAGCACCCAGGGCCAGGA
CCAAGCGTCCCGACACTCGTTCCCTTCTCCCAACGCGTCATATCGGCCTC
GGTTGGTTCCCTCCTCACTTCTCTTGTCACCAACCCACTCGACGTGGTCA
AGACCAGGGTACAAACCAGCTACATCCCTCCACCCTCCGCCACTACTACT
GCTGCTGCTGCTGCTACGGCCATGGATGGGGCCTGCCAAGACATGTATGC
CATTGAAACCGTCCACGGCGCGAAGGTCTCCTACACCAAGTCAACCTCCG
AGGTTGTGTACAGAGGAACAGCTGATGGTCTCATCAAGATCTTTCGGCAA
GAAGGGCTCGCCGGATGGTACAGGGGGCTCAGTCCCTCCCTGGCCATGGC
CGTGCCCTCCACCGTGCTGTACTATTCCCTCTACGACTCCCTCAGGGCTG
CCCTAGGGAGGGAGGAAGCCCTCCTCGCCCCCCTCCTGGCAGGGTCTACG
GCTCGGATCTGCGCAGCCACGGCCACAGCTCCTCTAGAGCTGTTGAGGAC
ACGGGCGCAGGCCGAGTCTCGGGCTGGCCTCGGTCTCCTTGAGGGTATGC
GAGGCATCACATCTGCCTCTGGCAGTGTCTGGTCGCTGTGGCATGGACTC
GGCGCACAACTGTGGAGAGACGTCCCCTTCAGCGCCATGTACTGGCTCGG
CTACGAACGAATTCTCCTCGCTATGGGTGGCCGCCGGGAGGATGAAAAAC
AGCTCACCCACATGCTCAAGTCCTTCACGGCCGGAGCCGGGGCTGGAATG
GCCTCCGCCTACCTCACAACTCCTTTCGATGTCATCAAGACAAGAAGACA
AGTCGCACCGATGGCCTCCTCCCTCGCCGCCGAGGCCGCCGTCTCAAGAT
CTCGCGCCAGCAGTAGCATGCAAGCCGCCTTGCGGTGTGTGCTGGCGGCA
GAGGGAGTGAGGGGCCTCTTCCGGGGCGCGATTCCACGTACCCTTAGGAT
AGGCCTGGCATGTGCTATAATGATCTCCACTTACGAGGGAGGGAAGCACT
ACATGGCCTCCACCACCGTAGCCTGCCGGGACCCCAAGGCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTCGGCTATGTGGGGAAGA
GGGGGGGGCAGGGAAGGAGGGAGGGAGGGAGGGAGGGGTGGCGGCGGCGG
TGCTGATGGTGGGAAGGGAGAAGAAGGAAGGAGTTGTGTAG back to topprotein sequence of NO18G00510.1 >NO18G00510.1-protein ID=NO18G00510.1-protein|Name=NO18G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MEEETVVVGDCCEDEEQHPGPGPSVPTLVPFSQRVISASVGSLLTSLVTN
PLDVVKTRVQTSYIPPPSATTTAAAAATAMDGACQDMYAIETVHGAKVSY
TKSTSEVVYRGTADGLIKIFRQEGLAGWYRGLSPSLAMAVPSTVLYYSLY
DSLRAALGREEALLAPLLAGSTARICAATATAPLELLRTRAQAESRAGLG
LLEGMRGITSASGSVWSLWHGLGAQLWRDVPFSAMYWLGYERILLAMGGR
REDEKQLTHMLKSFTAGAGAGMASAYLTTPFDVIKTRRQVAPMASSLAAE
AAVSRSRASSSMQAALRCVLAAEGVRGLFRGAIPRTLRIGLACAIMISTY
EGGKHYMASTTVACRDPKALPPSLPPSLPPSSPRLCGEEGGAGKEGGREG
GVAAAVLMVGREKKEGVV* back to topmRNA from alignment at chr18:210269..213534- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO18G00510.1 ID=NO18G00510.1|Name=NO18G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3266bp|location=Sequence derived from alignment at chr18:210269..213534- (Nannochloropsis oceanica)
ACAGCTGCATCCACAGGCGTGCAGGGACCATAAGATGGAGGAGGAGACGG
TCGTCGTCGGGGACTGCTGTGAAGACGAGGAGCAGCACCCAGGGCCAGGA
CCAAGCGTGTAAGTCATTGCCTCCCCCTCCCACCCCCTCCATCTCCCCGT
ACGCTCCCTCCTCCCACAGTCGACCTCCTCAATATCCTTGCCTCTTTTCT
TCTTCCCCATCTAAGCCAACTATAGAGATGTGTTATCCATTGCCCATTCC
TTTCATTCACCTTTCTTTCCTCGCGACTTTCCCCTCCTCCCCTCCCTCTC
CCCCTCTCTCCCTCCCTCTCCAAGCCCGACACTCGTTCCCTTCTCCCAAC
GCGTCATATCGGCCTCGGTTGGTTCCCTCCTCACTTCTCTTGTCACCAAC
CCACTCGACGTGGTCAAGACCAGGGTAAGAAGGGAGGGAGGGAGGGAGGA
AGCAAGTGAGGGAGGGACGCAGGGAAAGAGGAAGGGAGGTAAGCCTACAT
GGCCAACGGCCCGGCTGGCCAGCATAATAACAATCTCTCAATCTGCACAC
TGATGGACAGGTACAAACCAGCTACATCCCTCCACCCTCCGCCACTACTA
CTGCTGCTGCTGCTGCTACGGCCATGGATGGGGCCTGCCAAGACATGTAT
GCCATTGAAACCGTCCACGGCGCGAAGGTCTCCTACACCAAGGTACCTCC
CTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTCCTGTCTCTTCT
CAATTACTGTCCGTCTGTTTCCCCCTTACTCTCTTCGTATCCCTCCCTCC
CTCCCTCCCTTCCTCCCTCCCTCCTTCTCATCACAGTCAACCTCCGAGGT
TGTGTACAGAGGAACAGCTGATGGTCTCATCAAGGTAAGCACGCCCACCC
CCCTCCCTCCTTCCCTCCCTCTCTCCCTCCCTTCCTCTTTCTTTCTCTCC
TCTTGCTGCCTTATGTCCTCACCCCTCTCCTACCCTTCCTCTTAGCTCAA
GCCCGTTCTAAATAGTCCCCCCTCCCTCCCTCCCTCCCGCCTTCTAGATC
TTTCGGCAAGAAGGGCTCGCCGGATGGTACAGGGGGCTCAGTCCCTCCCT
GGCCATGGCCGTGCCCTCCACCGTGCTGTACTATTCCCTCTACGACTCCC
TCAGGGCTGCCCTAGGGAGGGAGGAAGGTAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGTACCATGCGACGGGATGGAAGGGAGGGAGGAGGGAGA
TACGGAAGGTGTGAGAGATGTCAACAGACTATCCGAATAAGCACTGACCA
CGTCCCTTCCTCCCTCCCTCCTTCCCTCACCGTCTTCCTCCCTTCCTCCT
CCCAGCCCTCCTCGCCCCCCTCCTGGCAGGGTCTACGGCTCGGATCTGCG
CAGCCACGGCCACAGCTCCTCTAGAGCTGTTGAGGACACGGGCGCAGGTC
GGGAGGGAGGGAGGGAGAGAAGGAGGGAGGGAGGAGGGAAGGAGGGATTT
TTGGACGGCTTGTAAGATGTGGATTGCATATATGAATGTGAACGAAAAGA
ATATCAATTACTTTTTTTTAATTATAATTATAATTATAATTATAATTATA
ATAACAATAATAATAATAATAATAGCAATCATAAAAGCTATAAAACCAAA
TTTAAAAACTAAAAGGTAAATGAATGATATTTCTTCCTTCTTCCTCGCCA
CTTCCCTCCGTCCCTCCCTCCCTTCCTTCCTCAGGCCGAGTCTCGGGCTG
GCCTCGGTCTCCTTGAGGGTATGCGAGGCATCACATCTGCCTCTGGCAGT
GTCTGGTCGCTGTGGCATGGACTCGGCGCACAACTGTGGAGAGACGTCCC
CTTCAGGTACTCCCTCCCTCCCTCCTCTTCCTCCCTCCCTTCCTCCCTCG
CTTGCTTCCTTTTCCCATCCTGTATTCTCTCTCGTCATAACCACCGTAAT
GGAAACTGAGGAATCACTTCTCTCCACCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAG
CGCCATGTACTGGCTCGGCTACGAACGAATTCTCCTCGCTATGGGTGGCC
GCCGGGAGGATGAAAAACAGGTCAGGCCCTCCCTCCCTCCTTGCGTCCCT
CCCTCCGTCCCTGCGTCCCTCCGCCCTTTGCTTGTCATACTTACTGACAC
GCCTCCTTCCTCCATCCCTCCCTCCCTCCCTCCCTCCCTAGCTCACCCAC
ATGCTCAAGTCCTTCACGGCCGGAGCCGGGGCTGGAATGGCCTCCGCCTA
CCTCACAACTCCTTTCGATGTCATCAAGGTGCCGACCTTTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTTTTCCCCGCCCTCCTCCTTGTGCGC
CGGGGCTGGTGTGGGGATTCCACCAAACCCGCAACTCCTCTTACTTCGTG
TAACTTTTACTTTTTCCACCTTCATGATTCAATTATGTCTCTTTGTTTCA
ACACATAAAGGAAAGTGTGCTATTCTGTCTTGTCTTCTTCCTTCCTCCTT
CTTTCCCTCCCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTT
CTATCTAACAGACAAGAAGACAAGTCGCACCGATGGCCTCCTCCCTCGCC
GCCGAGGCCGCCGTCTCAAGGTACGAGAAACAGCAGCATGGCCATTCACC
CCTCCCTCCCTCCCTCCCTCCTTCAGAACCCCCACCAGCAGTTGCACGCG
AGCTCTATCCACTCACCTCCTCCCGCCCTCCCTCCCTTCTTCAGATCTCG
CGCCAGCAGTAGCATGCAAGCCGCCTTGCGGTGTGTGCTGGCGGCAGAGG
GAGTGAGGGGCCTCTTCCGGGGCGCGATTCCACGTACCCTTAGGATAGGT
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGAAGGGAGTTTTTT
AAGTATGTGGGAAAGAATCTCACGGCCACTTAATTTGCATTCTATCTTTC
CTTCCCTCCCTCCCTCCCTCCCTCCAGGCCTGGCATGTGCTATAATGATC
TCCACTTACGAGGGAGGGAAGCACTACATGGCCTCCACCACCGTAGCCTG
CCGGGACCCCAAGGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTCCCCTCGGCTATGTGGGGAAGAGGGGGGGGCAGGGAAGGAGGGAGGG
AGGGAGGGAGGGGTGGCGGCGGCGGTGCTGATGGTGGGAAGGGAGAAGAA
GGAAGGAGTTGTGTAG back to topCoding sequence (CDS) from alignment at chr18:210269..213534- >NO18G00510.1 ID=NO18G00510.1|Name=NO18G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr18:210269..213534- (Nannochloropsis oceanica)
ATGGAGGAGGAGACGGTCGTCGTCGGGGACTGCTGTGAAGACGAGGAGCA
GCACCCAGGGCCAGGACCAAGCGTCCCGACACTCGTTCCCTTCTCCCAAC
GCGTCATATCGGCCTCGGTTGGTTCCCTCCTCACTTCTCTTGTCACCAAC
CCACTCGACGTGGTCAAGACCAGGGTACAAACCAGCTACATCCCTCCACC
CTCCGCCACTACTACTGCTGCTGCTGCTGCTACGGCCATGGATGGGGCCT
GCCAAGACATGTATGCCATTGAAACCGTCCACGGCGCGAAGGTCTCCTAC
ACCAAGTCAACCTCCGAGGTTGTGTACAGAGGAACAGCTGATGGTCTCAT
CAAGATCTTTCGGCAAGAAGGGCTCGCCGGATGGTACAGGGGGCTCAGTC
CCTCCCTGGCCATGGCCGTGCCCTCCACCGTGCTGTACTATTCCCTCTAC
GACTCCCTCAGGGCTGCCCTAGGGAGGGAGGAAGCCCTCCTCGCCCCCCT
CCTGGCAGGGTCTACGGCTCGGATCTGCGCAGCCACGGCCACAGCTCCTC
TAGAGCTGTTGAGGACACGGGCGCAGGCCGAGTCTCGGGCTGGCCTCGGT
CTCCTTGAGGGTATGCGAGGCATCACATCTGCCTCTGGCAGTGTCTGGTC
GCTGTGGCATGGACTCGGCGCACAACTGTGGAGAGACGTCCCCTTCAGCG
CCATGTACTGGCTCGGCTACGAACGAATTCTCCTCGCTATGGGTGGCCGC
CGGGAGGATGAAAAACAGCTCACCCACATGCTCAAGTCCTTCACGGCCGG
AGCCGGGGCTGGAATGGCCTCCGCCTACCTCACAACTCCTTTCGATGTCA
TCAAGACAAGAAGACAAGTCGCACCGATGGCCTCCTCCCTCGCCGCCGAG
GCCGCCGTCTCAAGATCTCGCGCCAGCAGTAGCATGCAAGCCGCCTTGCG
GTGTGTGCTGGCGGCAGAGGGAGTGAGGGGCCTCTTCCGGGGCGCGATTC
CACGTACCCTTAGGATAGGCCTGGCATGTGCTATAATGATCTCCACTTAC
GAGGGAGGGAAGCACTACATGGCCTCCACCACCGTAGCCTGCCGGGACCC
CAAGGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTC
GGCTATGTGGGGAAGAGGGGGGGGCAGGGAAGGAGGGAGGGAGGGAGGGA
GGGGTGGCGGCGGCGGTGCTGATGGTGGGAAGGGAGAAGAAGGAAGGAGT
TGTGTAG back to top
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