NO18G00280.1, NO18G00280.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00280.1
Unique Name	NO18G00280.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	849
Alignment location	chr18:101036..102039 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:101036..102039 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO18G00280.1 vs.

BLAST of NO18G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00280	NO18G00280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00280.1	NO18G00280.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00280.1.cds1	NO18G00280.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO18G00280.1.cds2	NO18G00280.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:101036..102039-
coding sequence from alignment at chr18:101036..102039-

mRNA sequence

>NO18G00280.1 ID=NO18G00280.1|Name=NO18G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ATGTCAGTGACCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGA
GGAGGAGGTAGAGGAGATGGAGCTCTATCTCCTCCATCACGACGAAGAAC
AACAGGAGGAGGACGAAAACGACTTCCAAGGTTTCGACCTCGACGTCGAG
GACGACAAGATTAATAATAACAATAGCTCCATCACCAGCGACACTGATGC
CATTGCCATGGCCACAGCGGAAACAACTTCTGACACCGGCACCATCAGTA
CAAGGAACAAGGCCAGTAGGAAGCCTTCGGGGATCGCACTGGCCTTCGCG
AAGCCAGACGTCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCT
CATGCTTGACGCTATGCTGAGGGAGGGTAATTGGAGAATCAAAGAGGCAC
CGAGATACCATGCTAATCGCAGCCCAATCTGGACATATGGGGTTATGTAC
GACAGGCCGGCCGTGGGGAGCGTGACTGCACAGCGGCGGTGGTTGTGCTT
GGCGACGGAGACTTGTCGTATAGGCAACGTGTCCATACTTTCCGGCCTAG
GAGCGGCTGGAAACTGCAATATCCATCTGAGAAGTGTCCATAACATCGTC
AGCGTTCGCACCCTTCAACTATTTGGAGAGCTCCTGGATGCGGCACCACT
AAAGCAGCTGGTCCCCACCAATCCCGTCCAGGACTTGCACCCGAAAACCA
TCAAGCACCTAATGACCGAGACCTACTGCGCGATGAAGAAGTCTATTGTC
GACGAGCTAGAGGAGATCAAGGGCCGATTTTTACCCAGCTTGGCCATTCT
CATCGACATATGGGAAGATAAATTTTCGCGGAGAGGAAGAGATGGATAA

protein sequence of NO18G00280.1

>NO18G00280.1-protein ID=NO18G00280.1-protein|Name=NO18G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MSVTDENALLPGLPSHEEEVEEMELYLLHHDEEQQEEDENDFQGFDLDVE
DDKINNNNSSITSDTDAIAMATAETTSDTGTISTRNKASRKPSGIALAFA
KPDVSPEEAEEYVKKHLMLDAMLREGNWRIKEAPRYHANRSPIWTYGVMY
DRPAVGSVTAQRRWLCLATETCRIGNVSILSGLGAAGNCNIHLRSVHNIV
SVRTLQLFGELLDAAPLKQLVPTNPVQDLHPKTIKHLMTETYCAMKKSIV
DELEEIKGRFLPSLAILIDIWEDKFSRRGRDG*

mRNA from alignment at chr18:101036..102039-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00280.1 ID=NO18G00280.1|Name=NO18G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1004bp|location=Sequence derived from alignment at chr18:101036..102039- (Nannochloropsis oceanica)
ATGTCAGTGACCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGA
GGAGGAGGTAGAGGAGATGGAGCTCTATCTCCTCCATCACGACGAAGAAC
AACAGGAGGAGGACGAAAACGACTTCCAAGGTTTCGACCTCGACGTCGAG
GACGACAAGATTAATAATAACAATAGCTCCATCACCAGCGACACTGATGC
CATTGCCATGGCCACAGCGGAAACAACTTCTGACACCGGCACCATCAGTA
CAAGGAACAAGGCCAGTAGGAAGCCTTCGGGGATCGCACTGGCCTTCGCG
AAGCCAGACGTCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCT
CATGCTTGACGCTATGCTGAGGGAGGGTAATTGGAGAATCAAAGAGGCAC
CGAGATACCATGCTAATCGCAGCCCAATCTGGACATATGGGGTTATGTAC
GACAGGCCGGCCGTGGGGAGCGTGACTGCACAGCGGCGGTGGTTGTGCTT
GGCGACGGAGACTTGTCGTATAGGCAACGTGTCCATACTTTCCGGCCTAG
GAGCGGCTGGAAACTGCAATATCCATCTGAGAAGTGTCCATAACATCGTC
AGCGTTCGCAGTAAGTCCATGTCTGCGAAAAAGGGATAGGATCAGGAGCA
GTTACAAAGGTGCGGGATGGAGGAAATGAAAATGATTGACGACAAAGGAG
TGGATGGCGGCCAGCGATACGACAAGCTAAATTTCGTCACGTATGTCGTA
ACTGGATGTTTCCAGCCCTTCAACTATTTGGAGAGCTCCTGGATGCGGCA
CCACTAAAGCAGCTGGTCCCCACCAATCCCGTCCAGGACTTGCACCCGAA
AACCATCAAGCACCTAATGACCGAGACCTACTGCGCGATGAAGAAGTCTA
TTGTCGACGAGCTAGAGGAGATCAAGGGCCGATTTTTACCCAGCTTGGCC
ATTCTCATCGACATATGGGAAGATAAATTTTCGCGGAGAGGAAGAGATGG
ATAA

Coding sequence (CDS) from alignment at chr18:101036..102039-

>NO18G00280.1 ID=NO18G00280.1|Name=NO18G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr18:101036..102039- (Nannochloropsis oceanica)
ATGTCAGTGACCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGA
GGAGGAGGTAGAGGAGATGGAGCTCTATCTCCTCCATCACGACGAAGAAC
AACAGGAGGAGGACGAAAACGACTTCCAAGGTTTCGACCTCGACGTCGAG
GACGACAAGATTAATAATAACAATAGCTCCATCACCAGCGACACTGATGC
CATTGCCATGGCCACAGCGGAAACAACTTCTGACACCGGCACCATCAGTA
CAAGGAACAAGGCCAGTAGGAAGCCTTCGGGGATCGCACTGGCCTTCGCG
AAGCCAGACGTCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCT
CATGCTTGACGCTATGCTGAGGGAGGGTAATTGGAGAATCAAAGAGGCAC
CGAGATACCATGCTAATCGCAGCCCAATCTGGACATATGGGGTTATGTAC
GACAGGCCGGCCGTGGGGAGCGTGACTGCACAGCGGCGGTGGTTGTGCTT
GGCGACGGAGACTTGTCGTATAGGCAACGTGTCCATACTTTCCGGCCTAG
GAGCGGCTGGAAACTGCAATATCCATCTGAGAAGTGTCCATAACATCGTC
AGCGTTCGCACCCTTCAACTATTTGGAGAGCTCCTGGATGCGGCACCACT
AAAGCAGCTGGTCCCCACCAATCCCGTCCAGGACTTGCACCCGAAAACCA
TCAAGCACCTAATGACCGAGACCTACTGCGCGATGAAGAAGTCTATTGTC
GACGAGCTAGAGGAGATCAAGGGCCGATTTTTACCCAGCTTGGCCATTCT
CATCGACATATGGGAAGATAAATTTTCGCGGAGAGGAAGAGATGGATAA

Synonyms

Publications