NO18G00180.1, NO18G00180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO18G00180.1
Unique NameNO18G00180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length276
Alignment locationchr18:70306..70876 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr18genomechr18:70306..70876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO18G00180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO18G00180NO18G00180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO18G00180.1NO18G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO18G00180.1.cds1NO18G00180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00180.1.cds2NO18G00180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO18G00180.1.cds3NO18G00180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO18G00180.1 ID=NO18G00180.1|Name=NO18G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=276bp
ATGCCTCTCAAGGCATGGAGAAAGGCATCCATTAGTCCCCACGAGTATAA
ATTGAAGGCGGACCCTTCTCCTCTCGAACTATGGACCCTCTTTCCTCAAG
GGTATGATACCGAAACTGCAGTGGTCCAGCAACGAATCAAAGAGAGCCAG
AATCCGCCGGACTGCGAAAGTGGAAAATACTTTTCGAACAACCTCAACAA
TTACGGCATGAGTTCTGACATTCATACGCCAGCAACTGGCGATACACGTC
TGAGCATGTTTGCCATGAAATTTTGA
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protein sequence of NO18G00180.1

>NO18G00180.1-protein ID=NO18G00180.1-protein|Name=NO18G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MPLKAWRKASISPHEYKLKADPSPLELWTLFPQGYDTETAVVQQRIKESQ
NPPDCESGKYFSNNLNNYGMSSDIHTPATGDTRLSMFAMKF*
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mRNA from alignment at chr18:70306..70876+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO18G00180.1 ID=NO18G00180.1|Name=NO18G00180.1|organism=Nannochloropsis oceanica|type=mRNA|length=571bp|location=Sequence derived from alignment at chr18:70306..70876+ (Nannochloropsis oceanica)
ATGCCTCTCAAGGCATGGAGAAAGGCATCCATTAGTCCCCACGAGTATAA
ATTGAAGGCGGACCCTTCTCCTCTCGAACTATGGACCCTCTTTCCTCAAG
GTAAGAAGATGTGTCTAATGAATTGGTGTAGCGGACTTTAAGTCGAGTGA
CCAAGCACATTTTCCATTTGCGCTTTAATATAGGGTATGATACCGAAACT
GCAGTGGTCCAGCAACGAATCAAAGAGAGCCAGAATCCGCCGGACTGCGA
AAGTGGAAAATACTTTTCGAACAACCTCAACAATTACGGCATGAGTTCTG
ACATTCATACGCCAGGTAAGTAGACAATATACCCATTTGAAAGAACAGAG
TCATCGATAAATCAAATCTCTGGGGCACACACACAATCACAAGTCTTATG
ATTGGCTTTGCTATGCAGCACAATCGTACTCTGCTCTACCATCCGCAGAC
GTACGTGTTATGGGAGGAGTCAATCGTCATTCAGTCGCGATTCAAACCAT
ATTTCATATTTCCTTCACCAAACACAGCAACTGGCGATACACGTCTGAGC
ATGTTTGCCATGAAATTTTGA
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Coding sequence (CDS) from alignment at chr18:70306..70876+

>NO18G00180.1 ID=NO18G00180.1|Name=NO18G00180.1|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at chr18:70306..70876+ (Nannochloropsis oceanica)
ATGCCTCTCAAGGCATGGAGAAAGGCATCCATTAGTCCCCACGAGTATAA
ATTGAAGGCGGACCCTTCTCCTCTCGAACTATGGACCCTCTTTCCTCAAG
GGTATGATACCGAAACTGCAGTGGTCCAGCAACGAATCAAAGAGAGCCAG
AATCCGCCGGACTGCGAAAGTGGAAAATACTTTTCGAACAACCTCAACAA
TTACGGCATGAGTTCTGACATTCATACGCCAGCAACTGGCGATACACGTC
TGAGCATGTTTGCCATGAAATTTTGA
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Synonyms
Publications