NO18G00120.1, NO18G00120.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO18G00120.1
Unique Name	NO18G00120.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	975
Alignment location	chr18:51357..52331 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr18	genome	chr18:51357..52331 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO18G00120.1 vs.

BLAST of NO18G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO18G00120	NO18G00120	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00120.1	NO18G00120.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO18G00120.1.cds1	NO18G00120.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr18:51357..52331-
coding sequence from alignment at chr18:51357..52331-

mRNA sequence

>NO18G00120.1 ID=NO18G00120.1|Name=NO18G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
ATGCCTTATTCCAAATACGAAGAAAAATACGCCCGCAAAAAGCGGATACC
CTCACCCATCGTTATGGTTAGGGTTTGGATGGTGTTTATGGCAATAATCA
CTGGCATCGTCTTTGTCGTATTCATAACCAAATATCTGAATCTAGGCCTC
AATCTAGATCATAAAGGTCCTATTCGCAATGCGAATCCTCCTTCATTTGC
TCCTGCTTATACCAAGCTTGTGTTTGTGACAGCCTGGATCGACCTGGGAG
CCGAACACATAGAAAAGACGCCGGCTTCAAGGCTAGATCACTTTAAAAGA
TTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTACCAGTCCTTCCAATAT
CGATGTCATGGAGAAAGTTCGGATCGAATTCCCCAACATTGTTGGGCTAC
GGTCCGTGGAAATGGATGAATTTCAATCGGTGCGAACCATAAGATCTTTT
ATCGACTTGAGGCTTCCTACTTCTTTAAACGACAATAAGGACACGCACGG
ATTTCTAGAGCTCATGCTGGCAAAAATCGACTTTGTCTACCAAGCCCTCG
CATATACGGACGCAACCCACCTTGCTTGGATAGACTTTAATATAGCCCAC
GTATTTGATGACTCCATAAACGCTCTGGAATCATTGCAAGATTTGCAGCA
AAGGGATCTTGAGCCTCACCTTCTCACATTTCCTGTCATCTGGAATCGCT
CCGACTTCAATATGGAGGAACTCATCCAACGAGTCAACTGGCGTTTCGCC
GGGGGGCTATTTTTAGGCGATCGATACTCTTTGGAACAATGGTACAAGCT
GTGCTCTGACACCCTCAGACTATTCCTTGCCCAGACGCAAACGCTTGTGT
GGGAGGTGAATTTTTGGGCATGGCTTGAAAATGCTTACCCTAATTCTTTT
CGCCCGCAGGTGTACACCTCAGATCATGACAACAGCCTTGTGGCAGTTCC
TGCGACAATGTTTGGTAACTTTTGA

protein sequence of NO18G00120.1

>NO18G00120.1-protein ID=NO18G00120.1-protein|Name=NO18G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MPYSKYEEKYARKKRIPSPIVMVRVWMVFMAIITGIVFVVFITKYLNLGL
NLDHKGPIRNANPPSFAPAYTKLVFVTAWIDLGAEHIEKTPASRLDHFKR
LASSGISLFVFTSPSNIDVMEKVRIEFPNIVGLRSVEMDEFQSVRTIRSF
IDLRLPTSLNDNKDTHGFLELMLAKIDFVYQALAYTDATHLAWIDFNIAH
VFDDSINALESLQDLQQRDLEPHLLTFPVIWNRSDFNMEELIQRVNWRFA
GGLFLGDRYSLEQWYKLCSDTLRLFLAQTQTLVWEVNFWAWLENAYPNSF
RPQVYTSDHDNSLVAVPATMFGNF*

mRNA from alignment at chr18:51357..52331-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO18G00120.1 ID=NO18G00120.1|Name=NO18G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=975bp|location=Sequence derived from alignment at chr18:51357..52331- (Nannochloropsis oceanica)
ATGCCTTATTCCAAATACGAAGAAAAATACGCCCGCAAAAAGCGGATACC
CTCACCCATCGTTATGGTTAGGGTTTGGATGGTGTTTATGGCAATAATCA
CTGGCATCGTCTTTGTCGTATTCATAACCAAATATCTGAATCTAGGCCTC
AATCTAGATCATAAAGGTCCTATTCGCAATGCGAATCCTCCTTCATTTGC
TCCTGCTTATACCAAGCTTGTGTTTGTGACAGCCTGGATCGACCTGGGAG
CCGAACACATAGAAAAGACGCCGGCTTCAAGGCTAGATCACTTTAAAAGA
TTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTACCAGTCCTTCCAATAT
CGATGTCATGGAGAAAGTTCGGATCGAATTCCCCAACATTGTTGGGCTAC
GGTCCGTGGAAATGGATGAATTTCAATCGGTGCGAACCATAAGATCTTTT
ATCGACTTGAGGCTTCCTACTTCTTTAAACGACAATAAGGACACGCACGG
ATTTCTAGAGCTCATGCTGGCAAAAATCGACTTTGTCTACCAAGCCCTCG
CATATACGGACGCAACCCACCTTGCTTGGATAGACTTTAATATAGCCCAC
GTATTTGATGACTCCATAAACGCTCTGGAATCATTGCAAGATTTGCAGCA
AAGGGATCTTGAGCCTCACCTTCTCACATTTCCTGTCATCTGGAATCGCT
CCGACTTCAATATGGAGGAACTCATCCAACGAGTCAACTGGCGTTTCGCC
GGGGGGCTATTTTTAGGCGATCGATACTCTTTGGAACAATGGTACAAGCT
GTGCTCTGACACCCTCAGACTATTCCTTGCCCAGACGCAAACGCTTGTGT
GGGAGGTGAATTTTTGGGCATGGCTTGAAAATGCTTACCCTAATTCTTTT
CGCCCGCAGGTGTACACCTCAGATCATGACAACAGCCTTGTGGCAGTTCC
TGCGACAATGTTTGGTAACTTTTGA

Coding sequence (CDS) from alignment at chr18:51357..52331-

>NO18G00120.1 ID=NO18G00120.1|Name=NO18G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr18:51357..52331- (Nannochloropsis oceanica)
ATGCCTTATTCCAAATACGAAGAAAAATACGCCCGCAAAAAGCGGATACC
CTCACCCATCGTTATGGTTAGGGTTTGGATGGTGTTTATGGCAATAATCA
CTGGCATCGTCTTTGTCGTATTCATAACCAAATATCTGAATCTAGGCCTC
AATCTAGATCATAAAGGTCCTATTCGCAATGCGAATCCTCCTTCATTTGC
TCCTGCTTATACCAAGCTTGTGTTTGTGACAGCCTGGATCGACCTGGGAG
CCGAACACATAGAAAAGACGCCGGCTTCAAGGCTAGATCACTTTAAAAGA
TTGGCTTCGAGTGGTATTTCTTTGTTTGTATTTACCAGTCCTTCCAATAT
CGATGTCATGGAGAAAGTTCGGATCGAATTCCCCAACATTGTTGGGCTAC
GGTCCGTGGAAATGGATGAATTTCAATCGGTGCGAACCATAAGATCTTTT
ATCGACTTGAGGCTTCCTACTTCTTTAAACGACAATAAGGACACGCACGG
ATTTCTAGAGCTCATGCTGGCAAAAATCGACTTTGTCTACCAAGCCCTCG
CATATACGGACGCAACCCACCTTGCTTGGATAGACTTTAATATAGCCCAC
GTATTTGATGACTCCATAAACGCTCTGGAATCATTGCAAGATTTGCAGCA
AAGGGATCTTGAGCCTCACCTTCTCACATTTCCTGTCATCTGGAATCGCT
CCGACTTCAATATGGAGGAACTCATCCAACGAGTCAACTGGCGTTTCGCC
GGGGGGCTATTTTTAGGCGATCGATACTCTTTGGAACAATGGTACAAGCT
GTGCTCTGACACCCTCAGACTATTCCTTGCCCAGACGCAAACGCTTGTGT
GGGAGGTGAATTTTTGGGCATGGCTTGAAAATGCTTACCCTAATTCTTTT
CGCCCGCAGGTGTACACCTCAGATCATGACAACAGCCTTGTGGCAGTTCC
TGCGACAATGTTTGGTAACTTTTGA

Synonyms

Publications