NO17G02370.2, NO17G02370.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02370.2
Unique NameNO17G02370.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1634
Alignment locationchr17:698249..700081 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:698249..700081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02370.2 vs.
Match: XP_005854557.1 (nmra-like family domain-containing 1-like protein [Nannochloropsis gaditana CCMP526]; EKU21804.1 nmra-like family domain-containing 1-like protein [Nannochloropsis gaditana CCMP526]; EWM22381.1 nmra-like family domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 6.400e-101
Identity = 185/270 (68.52%), Postives = 224/270 (82.96%), Query Frame = 0 
Query:    5 PAPSSTSTTTTDKPLLPLALVVGGTGLQGAGCLQDLRSSGRFRMRTITRNARSKPAVALAAQGVELYQGTLLDRPFLDKAMAGVDVLFLATFSDHDGTELRQGKNLGNAAVAAGVQRVVFSGGERIGVDTMDNKIKIEEYLRTLPLPHVVYLHTAFFFENVATKRGTKRVRVTRDPRQGHITQYTFSIPLLQDMRIPFISPTDIGRVAATVLLAPITQFPSGSILPIAGDVLSPREFVSAVARLTGAKATYTQLSLDFFRRLPIPGAELM 275
            P P++       +  LPLAL++GGTGLQG+GC+QDL  S R R+RT +RNARSK A+AL A GVELY+G+LLDRPF+ +AMAGV  LFL TFSDHDG+E++QGKNLG+AA+AAGV+RVVFSGGERIGV  MDNK +IEEYLRTL   H+VYLHTAFF+EN+ TKRGTKRVR+ R+P  G I++Y FSIPLL+DM IPFISP DIGRVAATVLLAP +  PS  +LPIAGDVLSP++FV  VA LTG +++YTQL LDFF+RLPIPG+EL+
Sbjct:    2 PKPTTQDKALEPESRLPLALIIGGTGLQGSGCIQDLIVSNRLRLRTTSRNARSKAALALTAHGVELYEGSLLDRPFVGRAMAGVHSLFLVTFSDHDGSEVQQGKNLGDAAIAAGVKRVVFSGGERIGVYAMDNKFQIEEYLRTLNFSHIVYLHTAFFYENIVTKRGTKRVRIERNPSSGRISRYFFSIPLLEDMAIPFISPKDIGRVAATVLLAPHSDIPSEIVLPIAGDVLSPKQFVEKVANLTGVESSYTQLPLDFFQRLPIPGSELI 271
The following BLAST results are available for this feature:
BLAST of NO17G02370.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854557.16.400e-10168.52nmra-like family domain-containing 1-like protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02370NO17G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02370.2NO17G02370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02370.2.cds1NO17G02370.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02370.2.cds2NO17G02370.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02370.2 ID=NO17G02370.2|Name=NO17G02370.2|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp
ACACAGAGCCAGCTGGACCAGCTGCATATTCCTAACGGCGGCTACTCATT
AGTCGCCTTGCAAAATTTTCATCCTCCTGCTGCTCAACAGGGGGCCCTCC
ATCGTCGCCGCCTCCTTCAGGTCACGCTGCCATCATCATCACAGCATGAT
GCCCGCACCTGCCCCCTCATCGACGTCAACAACTACCACAGACAAACCCC
TTCTGCCGCTCGCACTGGTGGTTGGCGGAACAGGCCTTCAGGGAGCTGGC
TGCCTCCAGGATTTACGAAGCAGTGGTCGCTTCCGCATGCGCACCATCAC
GCGGAACGCGAGAAGCAAGCCCGCCGTGGCACTCGCAGCCCAGGGGGTTG
AGCTCTATCAAGGCACGCTGCTTGACCGTCCTTTTTTAGACAAGGCCATG
GCAGGGGTTGATGTCCTCTTCTTGGCCACCTTTTCGGACCACGATGGTAC
GGAACTCCGGCAAGGCAAGAATTTGGGGAATGCAGCGGTTGCCGCGGGTG
TGCAGCGCGTCGTATTTTCGGGTGGGGAGCGCATTGGCGTAGATACAATG
GACAACAAGATCAAGATTGAGGAATACCTGCGGACGCTGCCATTGCCCCA
TGTCGTGTACCTTCACACTGCCTTTTTCTTTGAAAACGTGGCGACCAAGC
GGGGGACGAAGCGTGTACGTGTCACTCGTGATCCTCGACAGGGCCACATC
ACCCAGTACACGTTCTCCATCCCTTTGTTACAAGACATGCGCATTCCCTT
TATTTCCCCGACGGATATTGGTCGGGTCGCGGCTACCGTCCTGCTGGCTC
CGATCACTCAATTCCCTTCTGGGAGCATTTTGCCTATTGCCGGAGATGTG
CTATCTCCTCGAGAATTTGTCTCCGCCGTGGCTAGATTGACGGGTGCCAA
GGCCACATATACCCAGCTATCGCTGGATTTCTTTCGACGTTTGCCCATTC
CGGGGGCAGAACTCATGTATGTAGTGGATAGGCGAAGGGGAGGATGGGGA
AGGAGCTTGTAAAAGAGCGGGATGAGACTATGTATGGAATTCTGATCCCA
CCGCTGCTGCTGCTCCTGCCGCCGCTACGATTGGTGCTGCTGTTGAAGCC
ATTACACCATGTTGACTGTCATGCGCATAACTAGAGAGCGGACATCAATA
CCTTCGAACCGACTCAATCCTCCATCCCCTTCCCCTCCCCTTTCCCTCCT
CTCTACAAACCCAGCGTCCAGATGTACGAGTGGTACCACGCAGGCTGTCC
GGGGGAAGGGCATTCACGTGATCCTGCCGCCACACGGGCGTTGTGCACAC
ATGTGCGGAATGTGGAGGAATGGCTGCAGAGCGATGGCCTGGCCTTGATC
GATCGGATGGCGTATGAGGAGGGGTGGGGGAGTTGGATGCATGACGGACT
ACTGTGGGGGATGACTCACGTGTATGGGACATATATGAGATTGAAAGGCT
TTGTTGAGAGAGGGTATCAATGGAGAGGAGAAGCGGATGGACAGATAAGT
AGTAACGAATAATTGAATAAATAATATGCGGGCGCGTCCAATTGCTTGTC
AGTATCGTAAAAAGCTACCCGTAAATTAAGCTGTAAAAAGAGGCGCAAGC
GGACGATTTGATTCAAGTACACCCTCATGCGAAG
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protein sequence of NO17G02370.2

>NO17G02370.2-protein ID=NO17G02370.2-protein|Name=NO17G02370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MMPAPAPSSTSTTTTDKPLLPLALVVGGTGLQGAGCLQDLRSSGRFRMRT
ITRNARSKPAVALAAQGVELYQGTLLDRPFLDKAMAGVDVLFLATFSDHD
GTELRQGKNLGNAAVAAGVQRVVFSGGERIGVDTMDNKIKIEEYLRTLPL
PHVVYLHTAFFFENVATKRGTKRVRVTRDPRQGHITQYTFSIPLLQDMRI
PFISPTDIGRVAATVLLAPITQFPSGSILPIAGDVLSPREFVSAVARLTG
AKATYTQLSLDFFRRLPIPGAELMYVVDRRRGGWGRSL*
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mRNA from alignment at chr17:698249..700081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02370.2 ID=NO17G02370.2|Name=NO17G02370.2|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at chr17:698249..700081- (Nannochloropsis oceanica)
ACACAGAGCCAGCTGGACCAGCTGCATATTCCTAACGGCGGCTACTCATT
AGTCGCCTTGCAAAATTTTCATCCTCCTGCTGCTCAACAGGGGGCCCTCC
ATCGTCGCCGCCTCCTTCAGGTCACGCTGCCATCATCATCACAGCATGAT
GCCCGCACCTGCCCCCTCATCGACGTCAACAACTACCACAGACAAACCCC
TTCTGCCGCTCGCACTGGTGGTTGGCGGAACAGGCCTTCAGGGAGCTGGC
TGCCTCCAGGATTTACGAAGCAGTGGTCGCTTCCGCATGCGCACCATCAC
GCGGAACGCGAGAAGCAAGGTGCGTGAACATGCGTGATGTGGCCCCATCG
TCTTGAAGTACCTCTAGTCACTTCCCTGCTTCCACAACATATCCTTCTTC
GTCTGTCACCAACATGAATTCCTTGCCGCGCATACAATGAACGTATTTGC
TCGTACATTCTTACCCTTCATCACCTCCATCCCCCACCCACTCTATTCCT
TCCAACCCTCACCCACAGCCCGCCGTGGCACTCGCAGCCCAGGGGGTTGA
GCTCTATCAAGGCACGCTGCTTGACCGTCCTTTTTTAGACAAGGCCATGG
CAGGGGTTGATGTCCTCTTCTTGGCCACCTTTTCGGACCACGATGGTACG
GAACTCCGGCAAGGCAAGAATTTGGGGAATGCAGCGGTTGCCGCGGGTGT
GCAGCGCGTCGTATTTTCGGGTGGGGAGCGCATTGGCGTAGATACAATGG
ACAACAAGATCAAGATTGAGGAATACCTGCGGACGCTGCCATTGCCCCAT
GTCGTGTACCTTCACACTGCCTTTTTCTTTGAAAACGTGGCGACCAAGCG
GGGGACGAAGCGTGTACGTGTCACTCGTGATCCTCGACAGGGCCACATCA
CCCAGTACACGTTCTCCATCCCTTTGTTACAAGACATGCGCATTCCCTTT
ATTTCCCCGACGGATATTGGTCGGGTCGCGGCTACCGTCCTGCTGGCTCC
GATCACTCAATTCCCTTCTGGGAGCATTTTGCCTATTGCCGGAGATGTGC
TATCTCCTCGAGAATTTGTCTCCGCCGTGGCTAGATTGACGGGTGCCAAG
GCCACATATACCCAGCTATCGCTGGATTTCTTTCGACGTTTGCCCATTCC
GGGGGCAGAACTCATGTATGTAGTGGATAGGCGAAGGGGAGGATGGGGAA
GGAGCTTGTAAAAGAGCGGGATGAGACTATGTATGGAATTCTGATCCCAC
CGCTGCTGCTGCTCCTGCCGCCGCTACGATTGGTGCTGCTGTTGAAGCCA
TTACACCATGTTGACTGTCATGCGCATAACTAGAGAGCGGACATCAATAC
CTTCGAACCGACTCAATCCTCCATCCCCTTCCCCTCCCCTTTCCCTCCTC
TCTACAAACCCAGCGTCCAGATGTACGAGTGGTACCACGCAGGCTGTCCG
GGGGAAGGGCATTCACGTGATCCTGCCGCCACACGGGCGTTGTGCACACA
TGTGCGGAATGTGGAGGAATGGCTGCAGAGCGATGGCCTGGCCTTGATCG
ATCGGATGGCGTATGAGGAGGGGTGGGGGAGTTGGATGCATGACGGACTA
CTGTGGGGGATGACTCACGTGTATGGGACATATATGAGATTGAAAGGCTT
TGTTGAGAGAGGGTATCAATGGAGAGGAGAAGCGGATGGACAGATAAGTA
GTAACGAATAATTGAATAAATAATATGCGGGCGCGTCCAATTGCTTGTCA
GTATCGTAAAAAGCTACCCGTAAATTAAGCTGTAAAAAGAGGCGCAAGCG
GACGATTTGATTCAAGTACACCCTCATGCGAAG
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Coding sequence (CDS) from alignment at chr17:698249..700081-

>NO17G02370.2 ID=NO17G02370.2|Name=NO17G02370.2|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr17:698249..700081- (Nannochloropsis oceanica)
ATGATGCCCGCACCTGCCCCCTCATCGACGTCAACAACTACCACAGACAA
ACCCCTTCTGCCGCTCGCACTGGTGGTTGGCGGAACAGGCCTTCAGGGAG
CTGGCTGCCTCCAGGATTTACGAAGCAGTGGTCGCTTCCGCATGCGCACC
ATCACGCGGAACGCGAGAAGCAAGCCCGCCGTGGCACTCGCAGCCCAGGG
GGTTGAGCTCTATCAAGGCACGCTGCTTGACCGTCCTTTTTTAGACAAGG
CCATGGCAGGGGTTGATGTCCTCTTCTTGGCCACCTTTTCGGACCACGAT
GGTACGGAACTCCGGCAAGGCAAGAATTTGGGGAATGCAGCGGTTGCCGC
GGGTGTGCAGCGCGTCGTATTTTCGGGTGGGGAGCGCATTGGCGTAGATA
CAATGGACAACAAGATCAAGATTGAGGAATACCTGCGGACGCTGCCATTG
CCCCATGTCGTGTACCTTCACACTGCCTTTTTCTTTGAAAACGTGGCGAC
CAAGCGGGGGACGAAGCGTGTACGTGTCACTCGTGATCCTCGACAGGGCC
ACATCACCCAGTACACGTTCTCCATCCCTTTGTTACAAGACATGCGCATT
CCCTTTATTTCCCCGACGGATATTGGTCGGGTCGCGGCTACCGTCCTGCT
GGCTCCGATCACTCAATTCCCTTCTGGGAGCATTTTGCCTATTGCCGGAG
ATGTGCTATCTCCTCGAGAATTTGTCTCCGCCGTGGCTAGATTGACGGGT
GCCAAGGCCACATATACCCAGCTATCGCTGGATTTCTTTCGACGTTTGCC
CATTCCGGGGGCAGAACTCATGTATGTAGTGGATAGGCGAAGGGGAGGAT
GGGGAAGGAGCTTGTAA
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Synonyms
Publications