Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr17 genome chr17:694784..698235 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G02360.1 vs.
Match: EWM24177.1 (Protein of unknown function DUF1275 [Nannochloropsis gaditana])
HSP 1 Score: 283.9 bits (725), Expect = 1.300e-72
Identity = 172/293 (58.70%), Postives = 191/293 (65.19%), Query Frame = 0
Query: 1 MPDRVPLVHRHRKPHHFHFSDDVEEEEDATRQQHQHQQHQHQQHQHQHPSPHSRSHHQPDSSPSFSSPFAPSSAAPALGGPSSSRTIARPKHPAAASLQRRPTPLLSHYQQQHASSSSTPSATPKALAH-KPPHNATTNTNKRLGQGGKPAPPLPPHLSSSWPWVLFGSLTLTFNAGYINGITLHNLHHMASAHVTGMVARMSNLIAIREFGEFSAYFVAYSCFILGACMGGLLISHETFYLGRNYARALFLTAAIQGVALLIEKEWDSSVYFVYACCLAMGLQNSLTSKYSG 293
MPDRVPLVHRHR P+HFH+ D+ EE Q Q +H H S S H S P G S TI R KHPAAA+LQ RPT ++H H S S TP + P +L K PH K+ G KP+PP PHL+SSWPWVLFGSLTLT NAGYIN ITLHNLH + SAHVTG+VAR SNL A ++ S Y VAY CF+ GACMGGLLISHETFYLGRNYARALFLTAAIQGVAL+IE WD SVYF+YACCLAMGLQNSLTSKY G
Sbjct: 52 MPDRVPLVHRHRTPYHFHYEDEDEERRIPPSQG----QEGSDPFEHTHIGSSSSSSH---------------SDRPPSRGLSPPLTILRAKHPAAAALQHRPTTTVAH---GHRSPSPTPKSAPPSLPPPKSPHG------KKPATGNKPSPP--PHLTSSWPWVLFGSLTLTINAGYINSITLHNLHGIPSAHVTGIVARASNLFAEADWSRMSLYVVAYCCFVSGACMGGLLISHETFYLGRNYARALFLTAAIQGVALVIESHWDHSVYFIYACCLAMGLQNSLTSKYRG 314
The following BLAST results are available for this feature:
BLAST of NO17G02360.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 1.30e-72 / Id = 58.70 Sequence EWM24177.1
Match Name E-value Identity Description
EWM24177.1 1.300e-72 58.70 Protein of unknown function DUF1275 [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO17G02360.1 ID=NO17G02360.1|Name=NO17G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2699bp back to top protein sequence of NO17G02360.1
>NO17G02360.1-protein ID=NO17G02360.1-protein|Name=NO17G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp back to top mRNA from alignment at chr17:694784..698235+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02360.1 ID=NO17G02360.1|Name=NO17G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3452bp|location=Sequence derived from alignment at chr17:694784..698235+ (Nannochloropsis oceanica)A
TGCCCGATCGCGTTCCACTTGTGCACCGTCATAGAAAGCCACACCATTTC
CACTTTTCCGACGACGTCGAGGAGGAGGAAGACGCCACGAGACAGCAGCA
CCAGCATCAGCAGCACCAGCATCAGCAGCACCAGCACCAACATCCTTCTC
CCCACAGCCGCTCTCACCACCAGCCCGACTCATCGCCCTCCTTCTCTTCC
CCATTCGCACCCTCGTCCGCGGCCCCTGCTCTCGGCGGCCCTTCCTCTTC
ACGCACCATTGCTCGCCCCAAGCATCCCGCCGCTGCCTCCCTGCAGCGGC
GACCTACCCCTCTCCTCTCCCATTACCAGCAGCAACATGCCTCCTCCTCC
TCTACGCCCTCAGCCACCCCTAAGGCGTTAGCACATAAACCCCCGCACAA
TGCCACCACCAACACGAACAAACGGCTAGGTCAGGGGGGGAAACCCGCTC
CTCCCCTCCCTCCTCACCTCTCCTCGTCGTGGCCCTGGGTATTGTTTGGC
TCGTTAACCTTGACCTTTAATGCCGGGTATATCAATGGGATTACCCTGCA
CAACCTGCATCACATGGCGTCGGCCCACGTGACAGGGATGGTGGCCCGCA
TGAGCAACCTGATTGCCATCCGTGAGTTCGGCGAGTTCTCAGCCTATTTC
GTCGCCTACAGCTGCTTCATTCTGGGAGCCTGCATGGGAGGGCTGCTCAT
CTCGCACGAGACATTCTACCTG GTACGTTCGCGCATTTTTTCCCTATCTC
CTTCCCTTCTTCCCTTTCTCTCCTCGTCCCCTTCCTCTGTCCCATCCATC
CCTTCCCTCCACCCCACCCTTCCCCTCCCTCCCTCCCTCCTCCATCCCTT
CCCTTCACCCCACCCTTCCCTCCCTACCTCCCTCCATCTTCCCCCCATCC
TTCTTCGGCAGGGACGAAACTACGCGCGGGCCCTCTTTCTGACTGCTGCC
ATCCAGGGTGTCGCTCTCCTGATCGAAAAAGAGTGGGATTCCTCCGTCTA
CTTCGTCTATGCCTGCTGCCTGGCCATGGGCCTGCAGAACTCCCTGACAA
GTAAATACAG GTAGGGACATGGCACCCCTCCCTCCCTCCCTCCCTCCCCC
CTCCCTCTGTCTACTTCGCCTATGCCTGCTGTCTGGCTACAGAGCCGCAG
GATTCCCAGCCAAGCAAATCCCTGTGGAAGCGTGTGTCTCCCTCACCACC
CCCTTTCTCTTTCTCTCTCTTTCGTCTTGCCCCTTTCCCAACGAACGAGA
CCCTCACCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCCAGTGGCTCCGTC
GTTCGCACCACTCACCTGACGGGCGCCAGTACCGACCTGGGCATTGCTCT
GGGGCACATCATGAAGGGTCGCTCGGAAGAGTGGTGGAAGGTCAAGCTGC
ACGGCATCGCTATCTTTGGGTTCTTTTGTGGTGGGGTTGCCGGGCATTTC
GCCTTTGAG GTAGAAGAAGCAAGCCTTCCCTCCCTCCCTCCCTCCCTTTC
CTCCGGTCGCTGTGTGTGCGGGTGTGTGAGGTTGTGCGTGTATACCTCCC
TCTGTCTCGATCCCTCTGGGGCTCTCTTCCCTCCTTCATGACTCTCTCTC
TTGCATCCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCTCCTCCCTCAGACCTTCCAACACGGGGCCCTGCTCGTCAATGTCTG
CGTCACCACCACATGCGCCTTAATCCACACCCTATACGTCGCATACCACG
AGCGCCTCTCCCCTCTCTCCGTCCTTGAATCCAAGTCGGACATCCGCCTC
CATCGTCACCGAGTCGGGCCCTCCCCTCGATATCACACCACCCCCCGCGG
TCGACACCCCCGCCACCATTGGGCTGGTAACTCCCCCACCCCCCGTACAC
ACG GTACGTGCCCACCCTCCCGCCCCCCTCCCTCCCCCCCTTCCTTCGTC
GTCGCTCCTGTGCTATGCTTGCTTCCCTGCCGCCATCAGCTGATGCCTCC
CCAACTCCCTCCCCCCCTCCGTTCTCCACAGGCCAATTTTCGTCTGGCTT
GCCTCACACGCCTCCAGCACGAGGGAGGGAGGGAGGGAGTGATGGAGGGT
TCTCGCGTCAGTCTTCCTTTGGCCTTTCGTCTTCATCCCTAAGCGCGCTA
GAGAAGCAGCAGCAGCAGCAGCATCATCTGCAGAATGGAGCGTTCGAGTT
GTTGGACCTGAGTGGACAAGGGAGGGATGGGAGGAGGGAGGGAGGGAAGG
AGGGAGGAAGGGAAGGAGTGTCGATTATGCCGCCTGGATTTGGCAGAAGG
AAGCAGGAAGAGGGGGAGGAGGAGGGGGTGAAGGATGGAGAGAAGGAAGG
GGATAACACGCATGTTACTGCCCCCTTTTCCTCCAGAATGGTGCAGATAG
TGGTGGGTGATCAGCAGAAGAAGGAGGAGGGGGAGGGGAAAGAGGAGGAG
AAGGAAAAGAGGAAGACGGAGAATGAGGAGGAGGGAGGGGGGAAAGAGGA
GGAGGAGAAAGAGAAGAGGAAGACGGAGGAGGAGGAGGAGGCGGAGAGAG
AGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGACATA
GAGCTACCGCCGGAAGATAGGGAATGGAATGACGGCGAGGGTTATGCGGA
GGGGGACGTGGCACACCAGGTGCTGATGGAGGAAGAGGAGGTGGAGGCCG
AGGCCCTTGAACGGAACCGGGAATTTATCAGGCTAGCGTCTTTGTCGGAG
AGTGAGGAGGGGGGGGGAATAGGGGAGGAGGGAGACGAAGGGCGTTTGGA
GGAGGGGAATCGATAG back to top Coding sequence (CDS) from alignment at chr17:694784..698235+
>NO17G02360.1 ID=NO17G02360.1|Name=NO17G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at chr17:694784..698235+ (Nannochloropsis oceanica) back to top