NO17G02040.2, NO17G02040.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G02040.2
Unique NameNO17G02040.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1774
Alignment locationchr17:588871..590803 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:588871..590803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G02040.2 vs.
Match: EWM24211.1 (Bud13 [Nannochloropsis gaditana]; EWM24212.1 Bud13 [Nannochloropsis gaditana])

HSP 1 Score: 360.1 bits (923), Expect = 1.000e-95
Identity = 234/402 (58.21%), Postives = 263/402 (65.42%), Query Frame = 0 
Query:   90 AATSDISPPRRRPRQDSSSPDNSPPRRTRRQSL------SPSPPRAAHARASGFAGAVVEDASPPRRRKRHDSPPLPSFRVAVDAGADE-DAAPPRRRRRHDSPSSSPSHSTLSKSRKDEKEEKDASPPRQRRRQRHDSPTSARDGGADGGMDGGRETVKGDDASSPHRRHHDSPRPQRRSKEKEKEGREEKEKKKESGLKTGTEFRVELEAQKAAQARAWAEGAKDQSMTGQNAETVVRDRRGRKLEMLSEFLNQEAFKEGKAAKEAKEEYEWGRGKVQKEKDEEHRKELEDIKNAPFARYESDPTLERARKAEIRADDPMAAYMMKKLREATVEAAARSGRVLKPEYKGPAPSPNRFNIRPGYRWDGIDRGNGFEGKWFKRQSELVHKQQKDRAWGMSDL 485
            A   D+SPPRR PR      D SPPRRTR + L      SP  PR      S F  +   + +     + H   P PS   + D G +  D +PPRRRRRHDSPS                      P R+RRR    SP+  RDG  D    GG+ T   DD            R         + G+    + KE GLKTG EFR ELEAQK A+A AWAEGAKD  +TGQ+AETVVRDRRGRKLEMLSEFLNQEA+KEGKAAKEAKEEYEWGRGKVQKEKDE+HR+ELEDIKNAPFARYESD  LERARK EIRADDPMAAYM++K R+A  + A RSG+VLKPEYKGP P PNRFNIRPGYRWDGIDRGNGFE +WFKRQSELV K ++DRAWGMSDL
Sbjct:   11 AGAQDLSPPRR-PRSAGPQGDVSPPRRTRPERLPGTDASSPRRPRRRSPSVSPFDPSCRSNTTSGEPSRPHQPRPSPS--PSRDPGPEGGDISPPRRRRRHDSPS----------------------PLRRRRRHDTPSPSPTRDG--DPPKRGGQGT--RDD------------RGAVAVAVVSESGKTASTRPKEDGLKTGAEFRAELEAQKDAEAHAWAEGAKDAGVTGQHAETVVRDRRGRKLEMLSEFLNQEAYKEGKAAKEAKEEYEWGRGKVQKEKDEDHRRELEDIKNAPFARYESDLKLERARKEEIRADDPMAAYMLQKQRDALAQEATRSGKVLKPEYKGPPPKPNRFNIRPGYRWDGIDRGNGFEARWFKRQSELVTKHERDRAWGMSDL 371
The following BLAST results are available for this feature:
BLAST of NO17G02040.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 1.00e-95 / Id = 58.21SequenceEWM24211.1
Match NameE-valueIdentityDescription
EWM24211.11.000e-9558.21Bud13 [Nannochloropsis gaditana]; EWM24212.1 Bud13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G02040NO17G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G02040.2NO17G02040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G02040.2.cds1NO17G02040.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G02040.2.cds2NO17G02040.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G02040.2 ID=NO17G02040.2|Name=NO17G02040.2|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp
AAAAACACAGGGTGCTGCAGCCACCAGGCAAACGTCTTATCATCAGCATC
AGCACGCGTCGCCCTCCTACACAGCAAGTCAGCCAACCCCCCAACCATGG
CCTCCGCCAAGTCTAAAGCAGACATCCTCAAGCGGTACCTCTCATCTTCG
ATGAGCGAATCTAATGGTAGGTGAGGCGTGAAGGTTGCAGCAAAGAAATG
GAAACTGCGGCGATTGTGGGGGATGGGAAGTCGACGGCCTGAGGAAAAGG
AAAGGAAGTATGTATTCCCTCCCTACCCGCCCATATACCACATGCATCAT
ATACACTACAGAGGTCATAAAGACAAAGAAGAAACGCAAAAAGAGGCCCG
CAGTCGTAACGGGCGGCATGCACCTGGTGGACCAGGACGAATGGGGCGGG
TTTGGTCGGGGCGGCAGCGATAACGAAGTTGATGACGGCCCCCTGGTCGT
AGACGACAAGGGCGACCAAGTCGCCTCCGTGGAAGCCGCTTCGAAGAAGG
CAGCAGCCGACCCCGCACCGGGAGCAGCAGCCACTAGTGACATTTCCCCT
CCCCGGCGGCGCCCACGGCAGGACAGTTCCAGCCCTGACAATTCTCCTCC
CCGGCGGACACGCCGTCAGAGCCTTTCCCCCTCTCCTCCTCGTGCTGCGC
ATGCCCGCGCCAGTGGGTTCGCTGGTGCTGTCGTTGAGGACGCTTCGCCT
CCCCGGCGTCGCAAGCGCCACGATAGTCCACCTCTTCCTTCTTTTCGTGT
TGCTGTTGATGCTGGTGCTGACGAGGACGCAGCTCCTCCACGTCGACGAA
GACGACACGATAGCCCTTCCTCCTCTCCTTCTCATTCTACCCTTTCCAAG
AGCCGTAAAGACGAAAAGGAGGAGAAAGATGCCTCCCCACCTCGGCAGCG
GAGGCGACAACGGCATGACAGCCCTACTTCCGCTCGTGATGGTGGGGCTG
ACGGTGGGATGGATGGAGGAAGGGAGACGGTGAAGGGTGATGATGCCTCC
TCGCCCCATCGTCGTCATCATGACAGCCCCCGTCCTCAAAGGAGGAGCAA
GGAGAAGGAGAAGGAAGGGAGGGAAGAGAAGGAAAAGAAGAAGGAGTCGG
GCCTCAAAACCGGGACAGAATTTCGTGTGGAGCTCGAAGCACAGAAGGCG
GCCCAAGCACGAGCATGGGCGGAGGGGGCTAAAGATCAGTCAATGACGGG
GCAGAACGCGGAGACCGTTGTCCGGGATCGTCGCGGGCGGAAGCTGGAGA
TGCTGAGTGAGTTTTTGAACCAAGAGGCCTTCAAGGAGGGGAAGGCTGCC
AAGGAAGCGAAGGAGGAATATGAGTGGGGGAGGGGAAAGGTGCAGAAGGA
GAAGGATGAGGAGCACCGAAAGGAGTTGGAGGACATTAAGAACGCTCCAT
TTGCAAGGTACGAGAGCGATCCGACTTTGGAACGGGCCCGTAAAGCGGAG
ATCAGAGCGGATGACCCCATGGCCGCGTATATGATGAAAAAGCTACGGGA
GGCCACGGTGGAGGCAGCGGCGAGAAGCGGCAGGGTGCTCAAGCCTGAAT
ATAAGGGGCCGGCACCAAGCCCTAATCGTTTTAATATTCGCCCGGGGTAC
CGTTGGGATGGAATCGATCGTGGGAATGGCTTTGAAGGGAAGTGGTTCAA
GCGGCAGAGTGAGCTGGTCCACAAGCAGCAGAAGGATCGGGCATGGGGGA
TGTCGGATTTGTAAGATAGCATAGTTCTTTTTTCATGCTACACTCCTATA
AAACTATTGCATGCAACCTGACGT
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protein sequence of NO17G02040.2

>NO17G02040.2-protein ID=NO17G02040.2-protein|Name=NO17G02040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MYSLPTRPYTTCIIYTTEVIKTKKKRKKRPAVVTGGMHLVDQDEWGGFGR
GGSDNEVDDGPLVVDDKGDQVASVEAASKKAAADPAPGAAATSDISPPRR
RPRQDSSSPDNSPPRRTRRQSLSPSPPRAAHARASGFAGAVVEDASPPRR
RKRHDSPPLPSFRVAVDAGADEDAAPPRRRRRHDSPSSSPSHSTLSKSRK
DEKEEKDASPPRQRRRQRHDSPTSARDGGADGGMDGGRETVKGDDASSPH
RRHHDSPRPQRRSKEKEKEGREEKEKKKESGLKTGTEFRVELEAQKAAQA
RAWAEGAKDQSMTGQNAETVVRDRRGRKLEMLSEFLNQEAFKEGKAAKEA
KEEYEWGRGKVQKEKDEEHRKELEDIKNAPFARYESDPTLERARKAEIRA
DDPMAAYMMKKLREATVEAAARSGRVLKPEYKGPAPSPNRFNIRPGYRWD
GIDRGNGFEGKWFKRQSELVHKQQKDRAWGMSDL*
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mRNA from alignment at chr17:588871..590803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G02040.2 ID=NO17G02040.2|Name=NO17G02040.2|organism=Nannochloropsis oceanica|type=mRNA|length=1933bp|location=Sequence derived from alignment at chr17:588871..590803+ (Nannochloropsis oceanica)
AAAAACACAGGGTGCTGCAGCCACCAGGCAAACGTCTTATCATCAGCATC
AGCACGCGTCGCCCTCCTACACAGCAAGTCAGCCAACCCCCCAACCATGG
CCTCCGCCAAGTCTAAAGCAGACATCCTCAAGCGGTACCTCTCATCTTCG
ATGAGCGAATCTAATGGTAGGTGAGGCGTGAAGGTTGCAGCAAAGAAATG
GAAACTGCGGCGATTGTGGGGGATGGGAAGTCGACGGCCTGAGGAAAAGG
AAAGGAAGTATGTATTCCCTCCCTACCCGCCCATATACCACATGCATCAT
ATACACTACAGAGGTCATAAAGACAAAGAAGAAACGCAAAAAGAGGCCCG
CAGTCGTAACGGGCGGCATGCACCTGGTGGACCAGGACGAATGGGGCGGG
TTTGGTCGGGGCGGCAGCGATAACGAAGGTATGTACTTGTATGCGACGTG
ACATGAGTGTAGAGGAGGAACTATCAGCACTGTTATACTCGCTCATAACA
ATGGGCAGCAACACGGAGAAGTCCATACCATATTCAAAATGTCGATCGCT
CATCCCTCTTCTCTGTATCCTGCTCCTATCCCCTCAGTTGATGACGGCCC
CCTGGTCGTAGACGACAAGGGCGACCAAGTCGCCTCCGTGGAAGCCGCTT
CGAAGAAGGCAGCAGCCGACCCCGCACCGGGAGCAGCAGCCACTAGTGAC
ATTTCCCCTCCCCGGCGGCGCCCACGGCAGGACAGTTCCAGCCCTGACAA
TTCTCCTCCCCGGCGGACACGCCGTCAGAGCCTTTCCCCCTCTCCTCCTC
GTGCTGCGCATGCCCGCGCCAGTGGGTTCGCTGGTGCTGTCGTTGAGGAC
GCTTCGCCTCCCCGGCGTCGCAAGCGCCACGATAGTCCACCTCTTCCTTC
TTTTCGTGTTGCTGTTGATGCTGGTGCTGACGAGGACGCAGCTCCTCCAC
GTCGACGAAGACGACACGATAGCCCTTCCTCCTCTCCTTCTCATTCTACC
CTTTCCAAGAGCCGTAAAGACGAAAAGGAGGAGAAAGATGCCTCCCCACC
TCGGCAGCGGAGGCGACAACGGCATGACAGCCCTACTTCCGCTCGTGATG
GTGGGGCTGACGGTGGGATGGATGGAGGAAGGGAGACGGTGAAGGGTGAT
GATGCCTCCTCGCCCCATCGTCGTCATCATGACAGCCCCCGTCCTCAAAG
GAGGAGCAAGGAGAAGGAGAAGGAAGGGAGGGAAGAGAAGGAAAAGAAGA
AGGAGTCGGGCCTCAAAACCGGGACAGAATTTCGTGTGGAGCTCGAAGCA
CAGAAGGCGGCCCAAGCACGAGCATGGGCGGAGGGGGCTAAAGATCAGTC
AATGACGGGGCAGAACGCGGAGACCGTTGTCCGGGATCGTCGCGGGCGGA
AGCTGGAGATGCTGAGTGAGTTTTTGAACCAAGAGGCCTTCAAGGAGGGG
AAGGCTGCCAAGGAAGCGAAGGAGGAATATGAGTGGGGGAGGGGAAAGGT
GCAGAAGGAGAAGGATGAGGAGCACCGAAAGGAGTTGGAGGACATTAAGA
ACGCTCCATTTGCAAGGTACGAGAGCGATCCGACTTTGGAACGGGCCCGT
AAAGCGGAGATCAGAGCGGATGACCCCATGGCCGCGTATATGATGAAAAA
GCTACGGGAGGCCACGGTGGAGGCAGCGGCGAGAAGCGGCAGGGTGCTCA
AGCCTGAATATAAGGGGCCGGCACCAAGCCCTAATCGTTTTAATATTCGC
CCGGGGTACCGTTGGGATGGAATCGATCGTGGGAATGGCTTTGAAGGGAA
GTGGTTCAAGCGGCAGAGTGAGCTGGTCCACAAGCAGCAGAAGGATCGGG
CATGGGGGATGTCGGATTTGTAAGATAGCATAGTTCTTTTTTCATGCTAC
ACTCCTATAAAACTATTGCATGCAACCTGACGT
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Coding sequence (CDS) from alignment at chr17:588871..590803+

>NO17G02040.2 ID=NO17G02040.2|Name=NO17G02040.2|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr17:588871..590803+ (Nannochloropsis oceanica)
ATGTATTCCCTCCCTACCCGCCCATATACCACATGCATCATATACACTAC
AGAGGTCATAAAGACAAAGAAGAAACGCAAAAAGAGGCCCGCAGTCGTAA
CGGGCGGCATGCACCTGGTGGACCAGGACGAATGGGGCGGGTTTGGTCGG
GGCGGCAGCGATAACGAAGTTGATGACGGCCCCCTGGTCGTAGACGACAA
GGGCGACCAAGTCGCCTCCGTGGAAGCCGCTTCGAAGAAGGCAGCAGCCG
ACCCCGCACCGGGAGCAGCAGCCACTAGTGACATTTCCCCTCCCCGGCGG
CGCCCACGGCAGGACAGTTCCAGCCCTGACAATTCTCCTCCCCGGCGGAC
ACGCCGTCAGAGCCTTTCCCCCTCTCCTCCTCGTGCTGCGCATGCCCGCG
CCAGTGGGTTCGCTGGTGCTGTCGTTGAGGACGCTTCGCCTCCCCGGCGT
CGCAAGCGCCACGATAGTCCACCTCTTCCTTCTTTTCGTGTTGCTGTTGA
TGCTGGTGCTGACGAGGACGCAGCTCCTCCACGTCGACGAAGACGACACG
ATAGCCCTTCCTCCTCTCCTTCTCATTCTACCCTTTCCAAGAGCCGTAAA
GACGAAAAGGAGGAGAAAGATGCCTCCCCACCTCGGCAGCGGAGGCGACA
ACGGCATGACAGCCCTACTTCCGCTCGTGATGGTGGGGCTGACGGTGGGA
TGGATGGAGGAAGGGAGACGGTGAAGGGTGATGATGCCTCCTCGCCCCAT
CGTCGTCATCATGACAGCCCCCGTCCTCAAAGGAGGAGCAAGGAGAAGGA
GAAGGAAGGGAGGGAAGAGAAGGAAAAGAAGAAGGAGTCGGGCCTCAAAA
CCGGGACAGAATTTCGTGTGGAGCTCGAAGCACAGAAGGCGGCCCAAGCA
CGAGCATGGGCGGAGGGGGCTAAAGATCAGTCAATGACGGGGCAGAACGC
GGAGACCGTTGTCCGGGATCGTCGCGGGCGGAAGCTGGAGATGCTGAGTG
AGTTTTTGAACCAAGAGGCCTTCAAGGAGGGGAAGGCTGCCAAGGAAGCG
AAGGAGGAATATGAGTGGGGGAGGGGAAAGGTGCAGAAGGAGAAGGATGA
GGAGCACCGAAAGGAGTTGGAGGACATTAAGAACGCTCCATTTGCAAGGT
ACGAGAGCGATCCGACTTTGGAACGGGCCCGTAAAGCGGAGATCAGAGCG
GATGACCCCATGGCCGCGTATATGATGAAAAAGCTACGGGAGGCCACGGT
GGAGGCAGCGGCGAGAAGCGGCAGGGTGCTCAAGCCTGAATATAAGGGGC
CGGCACCAAGCCCTAATCGTTTTAATATTCGCCCGGGGTACCGTTGGGAT
GGAATCGATCGTGGGAATGGCTTTGAAGGGAAGTGGTTCAAGCGGCAGAG
TGAGCTGGTCCACAAGCAGCAGAAGGATCGGGCATGGGGGATGTCGGATT
TGTAA
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Synonyms
Publications