NO17G01860.1, NO17G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01860.1
Unique NameNO17G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length549
Alignment locationchr17:539468..540206 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:539468..540206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G01860.1 vs.
Match: EWM24251.1 (60s ribosomal protein l17-2 [Nannochloropsis gaditana])

HSP 1 Score: 345.1 bits (884), Expect = 1.300e-91
Identity = 168/182 (92.31%), Postives = 173/182 (95.05%), Query Frame = 0 
Query:    1 MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLEDVLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNAESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVHVKKEAGAPKLTRKQAARVRVGGGN 183
            MVRYSRE DDPNKAAKARGSHLRVHFKHVREV HT+ GWQV KAKQFLEDVLQYKRAVPFTRF  G+GRHAQ KLL+VPGSQCAWPQKATK+VLDMLTNAESNAEVKGMDTDNLYI+HAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPV VKKE GAPKLTRKQAARVRVGGGN
Sbjct:    1 MVRYSREIDDPNKAAKARGSHLRVHFKHVREVSHTITGWQVGKAKQFLEDVLQYKRAVPFTRFKGGIGRHAQGKLLSVPGSQCAWPQKATKIVLDMLTNAESNAEVKGMDTDNLYIVHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEIILTEKPVPVKKEPGAPKLTRKQAARVRVGGGN 182
The following BLAST results are available for this feature:
BLAST of NO17G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24251.11.300e-9192.3160s ribosomal protein l17-2 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01860NO17G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01860.1NO17G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01860.1.cds1NO17G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G01860.1.cds2NO17G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01860.1 ID=NO17G01860.1|Name=NO17G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=549bp
ATGGTCCGCTACAGCCGTGAGCCCGATGATCCCAACAAGGCCGCCAAGGC
CCGTGGCTCGCATCTGCGCGTCCACTTCAAGCACGTCCGCGAAGTGTGCC
ACACCGTCATGGGTTGGCAGGTGAGTAAGGCCAAACAGTTCCTGGAGGAC
GTGCTGCAGTACAAGCGGGCGGTGCCCTTTACCCGCTTCACGCAGGGCGT
GGGGCGACACGCCCAGGCCAAGCTCCTGAACGTACCTGGCTCTCAGTGTG
CCTGGCCCCAGAAGGCCACCAAGGTGGTGCTGGACATGCTCACCAACGCC
GAGTCCAATGCCGAGGTGAAGGGCATGGACACCGATAACCTCTACATCAT
TCACGCCCAGACTAATCGGGCGCCCAAGCAACGCCGACGAACCTACCGAG
CCCACGGCCGCATTAACCCCTACATGTCCAGTCCGGCTCACTTGGAGATT
ATCCTGACCGAGAAGCCCGTGCATGTCAAAAAGGAGGCCGGTGCGCCCAA
GCTTACCCGCAAGCAGGCGGCCCGAGTGCGCGTCGGCGGTGGCAACTAA
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protein sequence of NO17G01860.1

>NO17G01860.1-protein ID=NO17G01860.1-protein|Name=NO17G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MVRYSREPDDPNKAAKARGSHLRVHFKHVREVCHTVMGWQVSKAKQFLED
VLQYKRAVPFTRFTQGVGRHAQAKLLNVPGSQCAWPQKATKVVLDMLTNA
ESNAEVKGMDTDNLYIIHAQTNRAPKQRRRTYRAHGRINPYMSSPAHLEI
ILTEKPVHVKKEAGAPKLTRKQAARVRVGGGN*
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mRNA from alignment at chr17:539468..540206+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01860.1 ID=NO17G01860.1|Name=NO17G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=739bp|location=Sequence derived from alignment at chr17:539468..540206+ (Nannochloropsis oceanica)
ATGGTCCGCTACAGCCGTGAGCCCGATGATCCCAACAAGGGTACGTTATG
TGCCCTCTCCCCTTTCCCCCTGTCTCCTCTTTGTCTTGCTTAGTCCTTGG
TTCACCTGGGATCATCCATCACCCACCATGCCCTGAGCTTCCTAAGCATT
CGTATTGTCACTCGACGATCCCCATCGTCATTATGGCATCTACTAACCAA
TTCTTGCCTCCAACCACACCATTTAAATAGCCGCCAAGGCCCGTGGCTCG
CATCTGCGCGTCCACTTCAAGCACGTCCGCGAAGTGTGCCACACCGTCAT
GGGTTGGCAGGTGAGTAAGGCCAAACAGTTCCTGGAGGACGTGCTGCAGT
ACAAGCGGGCGGTGCCCTTTACCCGCTTCACGCAGGGCGTGGGGCGACAC
GCCCAGGCCAAGCTCCTGAACGTACCTGGCTCTCAGTGTGCCTGGCCCCA
GAAGGCCACCAAGGTGGTGCTGGACATGCTCACCAACGCCGAGTCCAATG
CCGAGGTGAAGGGCATGGACACCGATAACCTCTACATCATTCACGCCCAG
ACTAATCGGGCGCCCAAGCAACGCCGACGAACCTACCGAGCCCACGGCCG
CATTAACCCCTACATGTCCAGTCCGGCTCACTTGGAGATTATCCTGACCG
AGAAGCCCGTGCATGTCAAAAAGGAGGCCGGTGCGCCCAAGCTTACCCGC
AAGCAGGCGGCCCGAGTGCGCGTCGGCGGTGGCAACTAA
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Coding sequence (CDS) from alignment at chr17:539468..540206+

>NO17G01860.1 ID=NO17G01860.1|Name=NO17G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr17:539468..540206+ (Nannochloropsis oceanica)
ATGGTCCGCTACAGCCGTGAGCCCGATGATCCCAACAAGGCCGCCAAGGC
CCGTGGCTCGCATCTGCGCGTCCACTTCAAGCACGTCCGCGAAGTGTGCC
ACACCGTCATGGGTTGGCAGGTGAGTAAGGCCAAACAGTTCCTGGAGGAC
GTGCTGCAGTACAAGCGGGCGGTGCCCTTTACCCGCTTCACGCAGGGCGT
GGGGCGACACGCCCAGGCCAAGCTCCTGAACGTACCTGGCTCTCAGTGTG
CCTGGCCCCAGAAGGCCACCAAGGTGGTGCTGGACATGCTCACCAACGCC
GAGTCCAATGCCGAGGTGAAGGGCATGGACACCGATAACCTCTACATCAT
TCACGCCCAGACTAATCGGGCGCCCAAGCAACGCCGACGAACCTACCGAG
CCCACGGCCGCATTAACCCCTACATGTCCAGTCCGGCTCACTTGGAGATT
ATCCTGACCGAGAAGCCCGTGCATGTCAAAAAGGAGGCCGGTGCGCCCAA
GCTTACCCGCAAGCAGGCGGCCCGAGTGCGCGTCGGCGGTGGCAACTAA
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Synonyms
Publications