NO17G01680.1, NO17G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G01680.1
Unique NameNO17G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr17:489044..490006 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:489044..490006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO17G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01680NO17G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G01680.1NO17G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G01680.1.cds1NO17G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G01680.1 ID=NO17G01680.1|Name=NO17G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGGATACAGGAGGGGATCCTGGAAGGGTAGGAGTGGGAGGAGTCGGGGC
GGCCAAAGCAGCCACAAGAAGAGGAGGAGAGGGAACGAGAGGAATCCTCA
CTTTGCTCTCTTTACCCGGAGAAAAGGCAACACGAGCACTTGCAACCATT
GCTAGAATTCGTGCAGCACTTGCAAGAGGAAGGGAGAAGGGAAAGAGAAA
GATAGTGAGGGCGCTCCGACGAGGAGGAAGAGGGGGAGGGGAAGGAGGGG
GAGGACGAGGGGAAGGAGGGGGAGGTGGACGAGAAGGAGGTGGAGGAGGA
GGAGGAGGAGGGGGGGGGGAGGAGAAGGAGAAGAAGAGGAAGAAGAAGAA
AAAGAAGAAGAAAAAGAAGAAGAGGAGGAAGAAGAAGGGGGAGGAGGAGG
GGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGAAGGGGAGGACGAG
GTAGAGGCGGTGGAAGCAGAGGGGGAGGAGAAGCAGGAGGAGGAGGAGAA
GCAGGAGGAGGAGGAGGAGGAGAAGGGGGAGGGAGTAGGAAGGGAAAGGG
GAGGAGGGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGTCATGGAAAGAGGGTTTTAATGGC
TTTGGCAGGTTTTTCACCAGCTGAGTCCTTGATGGCCCTTACAGGGCTAG
GAGAAGGGGGGAAGAGGGGAGGTCGGAGGGGAGGCAACTTCTCCAGCATC
CGCTTTACCTGCCGCGGTTGACCAAAGCGGAGATCATGCGGACGACCTTC
TCCACGGACAAACTTAAACATGTCGTTCGTCGTGTACTCTGCTGCATTAT
AAATCGTATAATTTACGACGACCACGAAACATATCTTGCAAGGGAGGGGG
AACATAATGTTATTCCCAACCATGGACAGTCGTTCACTAAAAACAAAAGC
AAGGCTCAAGACA
back to top

protein sequence of NO17G01680.1

>NO17G01680.1-protein ID=NO17G01680.1-protein|Name=NO17G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MDTGGDPGRVGVGGVGAAKAATRRGGEGTRGILTLLSLPGEKATRALATI
ARIRAALARGREKGKRKIVRALRRGGRGGGEGGGGRGEGGGGGREGGGGG
GGGGGGEEKEKKRKKKKKKKKKKKRRKKKGEEEGEEEGDEEGVEGEGEDE
VEAVEAEGEEKQEEEEKQEEEEEEKGEGVGRERGGGGGGGGSRGGGGGGG
GGGGGGGGGHGKRVLMALAGFSPAESLMALTGLGEGGKRGGRRGGNFSSI
RFTCRG*
back to top

mRNA from alignment at chr17:489044..490006+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G01680.1 ID=NO17G01680.1|Name=NO17G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at chr17:489044..490006+ (Nannochloropsis oceanica)
ATGGATACAGGAGGGGATCCTGGAAGGGTAGGAGTGGGAGGAGTCGGGGC
GGCCAAAGCAGCCACAAGAAGAGGAGGAGAGGGAACGAGAGGAATCCTCA
CTTTGCTCTCTTTACCCGGAGAAAAGGCAACACGAGCACTTGCAACCATT
GCTAGAATTCGTGCAGCACTTGCAAGAGGAAGGGAGAAGGGAAAGAGAAA
GATAGTGAGGGCGCTCCGACGAGGAGGAAGAGGGGGAGGGGAAGGAGGGG
GAGGACGAGGGGAAGGAGGGGGAGGTGGACGAGAAGGAGGTGGAGGAGGA
GGAGGAGGAGGGGGGGGGGAGGAGAAGGAGAAGAAGAGGAAGAAGAAGAA
AAAGAAGAAGAAAAAGAAGAAGAGGAGGAAGAAGAAGGGGGAGGAGGAGG
GGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGAAGGGGAGGACGAG
GTAGAGGCGGTGGAAGCAGAGGGGGAGGAGAAGCAGGAGGAGGAGGAGAA
GCAGGAGGAGGAGGAGGAGGAGAAGGGGGAGGGAGTAGGAAGGGAAAGGG
GAGGAGGGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGTCATGGAAAGAGGGTTTTAATGGC
TTTGGCAGGTTTTTCACCAGCTGAGTCCTTGATGGCCCTTACAGGGCTAG
GAGAAGGGGGGAAGAGGGGAGGTCGGAGGGGAGGCAACTTCTCCAGCATC
CGCTTTACCTGCCGCGGTTGACCAAAGCGGAGATCATGCGGACGACCTTC
TCCACGGACAAACTTAAACATGTCGTTCGTCGTGTACTCTGCTGCATTAT
AAATCGTATAATTTACGACGACCACGAAACATATCTTGCAAGGGAGGGGG
AACATAATGTTATTCCCAACCATGGACAGTCGTTCACTAAAAACAAAAGC
AAGGCTCAAGACA
back to top

Coding sequence (CDS) from alignment at chr17:489044..490006+

>NO17G01680.1 ID=NO17G01680.1|Name=NO17G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr17:489044..490006+ (Nannochloropsis oceanica)
ATGGATACAGGAGGGGATCCTGGAAGGGTAGGAGTGGGAGGAGTCGGGGC
GGCCAAAGCAGCCACAAGAAGAGGAGGAGAGGGAACGAGAGGAATCCTCA
CTTTGCTCTCTTTACCCGGAGAAAAGGCAACACGAGCACTTGCAACCATT
GCTAGAATTCGTGCAGCACTTGCAAGAGGAAGGGAGAAGGGAAAGAGAAA
GATAGTGAGGGCGCTCCGACGAGGAGGAAGAGGGGGAGGGGAAGGAGGGG
GAGGACGAGGGGAAGGAGGGGGAGGTGGACGAGAAGGAGGTGGAGGAGGA
GGAGGAGGAGGGGGGGGGGAGGAGAAGGAGAAGAAGAGGAAGAAGAAGAA
AAAGAAGAAGAAAAAGAAGAAGAGGAGGAAGAAGAAGGGGGAGGAGGAGG
GGGAGGAGGAGGGAGACGAGGAGGGGGTGGAAGGGGAAGGGGAGGACGAG
GTAGAGGCGGTGGAAGCAGAGGGGGAGGAGAAGCAGGAGGAGGAGGAGAA
GCAGGAGGAGGAGGAGGAGGAGAAGGGGGAGGGAGTAGGAAGGGAAAGGG
GAGGAGGGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGTCATGGAAAGAGGGTTTTAATGGC
TTTGGCAGGTTTTTCACCAGCTGAGTCCTTGATGGCCCTTACAGGGCTAG
GAGAAGGGGGGAAGAGGGGAGGTCGGAGGGGAGGCAACTTCTCCAGCATC
CGCTTTACCTGCCGCGGTTGA
back to top
Synonyms
Publications