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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr17 | genome | chr17:476764..480683 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G01630.1 vs.
Match: EWM24252.1 (serine acetyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 510.4 bits (1313), Expect = 4.700e-141 Identity = 279/362 (77.07%), Postives = 302/362 (83.43%), Query Frame = 0
Query: 11 FLLLFLLVQYTTNAFKPLPSSPFLSVRGMPASSKARWAKETAAKEKAAVAAAAAAASTPVVVPSARSSVHLE----APTRIQDLVRLLHESEDPLWELVKFEAETSAAQDEKAAGLIQLRVLDQGGIYSAARDFLATKLQSSNVPTDKIKLLIDSVFQEEPDIIQDFREDLLVATMRDSSIPSLLAAFLFSKGYHAVATYRIAHSVYCQGRESLARYLQSLNSELFGADIHPACSVGRALYLSSGTCVVIGETAKLGDDIILMQGVTLGGNGKERGDRHPKLGSGVLVAAGSTVLGNIPIGDGVIISAGSVVLRPVPEYTRCSGVPAKVTSVLRKHKDNVSTIRDKGQSHFIEIFQDPQRGG 369
FLL+F + + F P P + +G +S +R A E E A A V S+ +S +E +P+RIQDLVRLLH SEDPLWELVKFEAETSAAQDEKAAGLIQ RVLD+GGI SAARDFLATKLQ SN+P K+KLLIDSVFQEEP I+QD REDLLVATMRDSSIPSLLAAFLFSKGYHAVATYRIAHS+Y QGRESLARYLQSLNSELFGADIHPAC VGRALYLSSGTCVVIGETAKLGDD+I+MQGVTLGGNGKERGDRHPKLGSGVLVAAGSTVLGNIPIGDGVIISAGSVVLRPVPEYTRCSGVPAKVTSVLRKHK+NV +I+ GQSHF+EIFQDPQRGG
Sbjct: 10 FLLIFFALGHVMAFFHMPP--PTVLWKGETRASLSRAANEEIGTEGGKEAEQRAPVKDTVSSGSSGASFSMELQSKSPSRIQDLVRLLHASEDPLWELVKFEAETSAAQDEKAAGLIQQRVLDRGGIQSAARDFLATKLQGSNLPATKMKLLIDSVFQEEPGIVQDLREDLLVATMRDSSIPSLLAAFLFSKGYHAVATYRIAHSIYSQGRESLARYLQSLNSELFGADIHPACCVGRALYLSSGTCVVIGETAKLGDDVIIMQGVTLGGNGKERGDRHPKLGSGVLVAAGSTVLGNIPIGDGVIISAGSVVLRPVPEYTRCSGVPAKVTSVLRKHKENVLSIQGMGQSHFVEIFQDPQRGG 369
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G01630.1 ID=NO17G01630.1|Name=NO17G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=3652bp CGCTTGTGTAGTTTCTAAGGATTTCATTCTTTGAGCTGACCCTCCCTTCG CCTTTTCTTTAATGTACATAACCATTCCCCGCTGTCGTCGACGCCATCTC GCGTCATTTAGTCAGTGTCTCCACTGATGAGGCCAGTAAAATCGTCCATG ATCGAACCGACGACGTTCTAGGGAAGGAGTAAGGTGTGGGAGGAATATGT GAATGGCGCGTGAGAGGAAGCTTTTGTTGGAGTGCAAGGCAGCTTCCGAG TTAAAGAAGGAATAGTTTGGGGCCTCCCGTTCTTCCTACAGACAGACACA TCTCCATTCCTGCCCGCCGATCTATCCGCTGATTCCGAAAGAACTTTATC TGATGCACATTTTATCCCTCCAAACCCCTGCCTCAACCGTGCGTACCATC CGTCCCGGTGTGATATCCACGCCCACCACCCGCATCCGCACCCCGCACCC TGGTCTGATCTCCACCTCCATATCCGACGTCCGCCATACATTATCCTGAG CATCGAACCCGTAATCTTGGGGCATCTGGTGCTTGTTCACATAAATACCC TGTACAGGCCCAGCGTCGGCAAAGAAGCCCATTTCCGTTACTGTTGTTAC TTGGGCGTCCAGAATCTCGTTGCGGAAAGGCCGAAACAGCATTACCGTAA ATTTAACCAATACCTCAACCTGCCCCGTCTCGTACTCGATCTTTCCAGGC CGAATATGCTGGTCCTCTAAGCCTACCAAGGCAATCACGAAGCCCAGGTC CGGTTCCAGTGTTCCCTCCATCATTTGTGTCAGCCGCCGCCTTGAGGGAA TGGAGTGGGAAAGGAAGGCAGGAGTTATTTGTATGTAAGACGTTTCAAAA AGACGGCACATGCATCCAAGACTCTCCTTCCCACACGCGCTTTGCAAGTC CCAGTCGCTCAGATTTCCACCACGCCAAGCAGAAACAAATAGCGCCTAGC TCTACCCCATTCACGTCACCCCACACTTCCCGGGACTTTCACGAACACTC CAAACAAGCCACCCCACAGACGTCTCCCTTCGCCATTTCATGTATCGATA ATGTAGATGATATTCAGTACATACTTAATGGTTTCCTTGAGGTTAGGGCC CAGGTCTTTGGGCTCTAGCATGAAGTCCTTTTCCAAGGTTTTCTGTGGGT ATGTTGAGGAACGAGGTTGCGGGGCTGATGAAGTGATTTCTAAAGGGACC TTTTCAAAGCAACGTAGATAGTTACCGGATAAAACATGATGGCTGTGCAA CGGAGGGGAAGCAATGTAGATAGTTACCAGATAAAACATGATGTCTGTGC AACGGAGGAGTGCAGCGGGGCGGGAATGGCTAGTTTGGCTGCCACGGATA GAACAAAGTTTTGGGAATGGTGGCTTGGTGTGGTGGAGCGTGGGGGCCTG CTGTCCCGTGCCGAAGCCTGGAATGAGGGAAGGAAAGGGGAAAGGCGGCC TTAGTTGTAATAAGGATGGCGTGGGAGACGAGCAAAACCAGGCAAAAGAT AGGACTCCTATCATAGGAGAGGACCGATCACTCGAGATATGGTGATCACG GATGGCAACATCACTCGTTGTCTTGCTGAAGCAACCGACGGCCGGGCAAC CTTTTCACACCCTGAGCGCTCCAAACCACCACCGCCCTCATCGCATTTCT CGCACCATCTACAGAGCGCATTAGAAAGGCCTGTGCCAGTATCTGCTTTC CGCGGTGGAAGTTGAGGACATTTCTAAACTAGGCGTCCTCACATGGCCAG CCCTCCAGCAGCAACACCCATCTTCCTCCTCCTGTTCCTCTTGGTGCAGT ACACCACGAACGCTTTTAAGCCCTTGCCCTCGTCGCCATTTTTGTCAGTC CGGGGCATGCCAGCGTCATCCAAGGCGCGCTGGGCAAAAGAAACAGCCGC CAAGGAAAAGGCGGCGGTCGCAGCGGCTGCGGCGGCGGCATCCACTCCTG TCGTTGTACCATCCGCCCGGTCCAGTGTCCACCTCGAGGCACCAACTCGA ATTCAAGACCTGGTGCGGCTGCTTCACGAGTCGGAGGATCCTCTGTGGGA GTTGGTCAAGTTTGAAGCGGAAACCTCAGCGGCGCAGGACGAGAAGGCGG CCGGCCTTATCCAGCTACGAGTGCTCGACCAAGGGGGCATCTACTCGGCT GCCCGGGACTTTTTGGCCACCAAACTTCAAAGCTCCAATGTGCCGACGGA CAAAATTAAATTGTTGATTGATTCGGTTTTCCAAGAAGAACCGGACATCA TTCAAGACTTTCGAGAAGACCTGCTGGTGGCCACGATGCGAGACTCGAGC ATCCCCTCCCTTCTAGCCGCCTTCCTCTTCTCCAAAGGCTACCATGCTGT CGCCACGTACCGCATTGCCCACTCCGTCTATTGCCAAGGCCGCGAGTCGT TGGCTCGTTATCTTCAATCTCTCAACTCAGAGCTCTTTGGCGCCGATATC CACCCGGCCTGCAGCGTTGGACGGGCTCTGTACCTTTCGAGTGGAACCTG CGTGGTCATCGGCGAGACGGCCAAGCTGGGCGATGACATCATTCTCATGC AAGGCGTGACACTTGGGGGGAACGGTAAGGAACGCGGCGATCGGCACCCC AAACTGGGTAGTGGTGTGCTTGTGGCAGCGGGTTCTACCGTCTTGGGCAA CATTCCGATTGGCGATGGTGTCATCATTTCCGCTGGCTCGGTAGTGCTGC GGCCTGTGCCCGAGTACACAAGGTGCAGTGGCGTCCCGGCCAAGGTTACC TCAGTGCTTCGCAAACACAAAGACAACGTTTCGACTATAAGGGACAAAGG CCAGAGCCATTTCATTGAGATTTTTCAAGATCCGCAGCGAGGAGGTTAAG GGACCACCGCAGTAGGCCAGTCACGCGGCAGAGCAACATATGACGATGCT AAAAATGGCGGCAACGCCTGCTATCGTAAAAAGGAAAATCTCGCGTCCAC GGCAGCCATGATTAATTACTAGATGGTCTCCGGCGGACACATCAAGCACA AGCCGTTGTCGCCATCGTTTATGACTGCGGGTTGAGAAAATTGGGCCTTA TCATGTTAGAAATCGAAGAAAAGACCTCCCGCATCACCATCCCCTCTATT TTCGTCGTCTACTCCAGAAGGTCGCTTTTCAAGAACGCACGACAACGACT GCCGCAGCAGCAGCAGCAATAACAACAGTAGCAGTAGCAGCAGCAGTCGT ATCGACAAAGGCAACTTAGTGGTGGTAGCGTTGTACTGGTCACCATCTAT TACAAGGGCACGTCAAGCCCAAAACAAAACAGATCGGTCCAATTGAAACG CCTCCAACTTACGTAGAAGTCTCCCTTGGCCTCCTCTCCTTCTCTGGCTG CTACGATTTTATTTAGGAGGAAGGCGGGGGCGTACGCCAATACTTTGGGT GTGCAGGTTTCAGATGAGACTAGACACGGATAAGGAACGAGTCATGAAGG AAAGTACATCACGCACGACTTTGCAAAAAGACGAAACGACTTGAATTCGA TGAGAGAAGAAATACGCCGTCTGCTGTGCTCGTATTTGAGGCATCTGCTT GCTTGCGGGCACCCCCCACCAATACCATGCCCCCAAAAAAAAGGATATCA GTTGAAGTGCCGAAGCAAAAGGAGTGATCTCGGGTGTAAACAAGAAACCT TG back to topprotein sequence of NO17G01630.1 >NO17G01630.1-protein ID=NO17G01630.1-protein|Name=NO17G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp MASPPAATPIFLLLFLLVQYTTNAFKPLPSSPFLSVRGMPASSKARWAKE TAAKEKAAVAAAAAAASTPVVVPSARSSVHLEAPTRIQDLVRLLHESEDP LWELVKFEAETSAAQDEKAAGLIQLRVLDQGGIYSAARDFLATKLQSSNV PTDKIKLLIDSVFQEEPDIIQDFREDLLVATMRDSSIPSLLAAFLFSKGY HAVATYRIAHSVYCQGRESLARYLQSLNSELFGADIHPACSVGRALYLSS GTCVVIGETAKLGDDIILMQGVTLGGNGKERGDRHPKLGSGVLVAAGSTV LGNIPIGDGVIISAGSVVLRPVPEYTRCSGVPAKVTSVLRKHKDNVSTIR DKGQSHFIEIFQDPQRGG* back to topmRNA from alignment at chr17:476764..480683+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G01630.1 ID=NO17G01630.1|Name=NO17G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=3920bp|location=Sequence derived from alignment at chr17:476764..480683+ (Nannochloropsis oceanica) CGCTTGTGTAGTTTCTAAGGATTTCATTCTTTGAGCTGACCCTCCCTTCG
CCTTTTCTTTAATGTACATAACCATTCCCCGCTGTCGTCGACGCCATCTC
GCGTCATTTAGTCAGTGTCTCCACTGATGAGGCCAGTAAAATCGTCCATG
ATCGAACCGACGACGTTCTAGGGAAGGAGTAAGGTGTGGGAGGAATATGT
GAATGGCGCGTGAGAGGAAGCTTTTGTTGGAGTGCAAGGCAGCTTCCGAG
TTAAAGAAGGAATAGTTTGGGGCCTCCCGTTCTTCCTACAGACAGACACA
TCTCCATTCCTGCCCGCCGATCTATCCGCTGATTCCGAAAGAACTTTATC
TGATGCACATTTTATCCCTCCAAACCCCTGCCTCAACCGTGCGTACCATC
CGTCCCGGTGTGATATCCACGCCCACCACCCGCATCCGCACCCCGCACCC
TGGTCTGATCTCCACCTCCATATCCGACGTCCGCCATACATTATCCTGAG
CATCGAACCCGTAATCTTGGGGCATCTGGTGCTTGTTCACATAAATACCC
TGTACAGGCCCAGCGTCGGCAAAGAAGCCCATTTCCGTTACTGTTGTTAC
TTGGGCGTCCAGAATCTCGTTGCGGAAAGGCCGAAACAGCATTACCGTAA
ATTTAACCAATACCTCAACCTGCCCCGTCTCGTACTCGATCTTTCCAGGC
CGAATATGCTGGTCCTCTAAGCCTACCAAGGCAATCACGAAGCCCAGGTC
CGGTTCCAGTGTTCCCTCCATCATTTGTGTCAGCCGCCGCCTTGAGGGAA
TGGAGTGGGAAAGGAAGGCAGGAGTTATTTGTATGTAAGACGTTTCAAAA
AGACGGCACATGCATCCAAGACTCTCCTTCCCACACGCGCTTTGCAAGTC
CCAGTCGCTCAGATTTCCACCACGCCAAGCAGAAACAAATAGCGCCTAGC
TCTACCCCATTCACGTCACCCCACACTTCCCGGGACTTTCACGAACACTC
CAAACAAGCCACCCCACAGACGTCTCCCTTCGCCATTTCATGTATCGATA
ATGTAGATGATATTCAGTACATACTTAATGGTTTCCTTGAGGTTAGGGCC
CAGGTCTTTGGGCTCTAGCATGAAGTCCTTTTCCAAGGTTTTCTGTGGGT
ATGTTGAGGAACGAGGTTGCGGGGCTGATGAAGTGATTTCTAAAGGGACC
TTTTCAAAGCAACGTAGATAGTTACCGGATAAAACATGATGGCTGTGCAA
CGGAGGGGAAGCAATGTAGATAGTTACCAGATAAAACATGATGTCTGTGC
AACGGAGGAGTGCAGCGGGGCGGGAATGGCTAGTTTGGCTGCCACGGATA
GAACAAAGTTTTGGGAATGGTGGCTTGGTGTGGTGGAGCGTGGGGGCCTG
CTGTCCCGTGCCGAAGCCTGGAATGAGGGAAGGAAAGGGGAAAGGCGGCC
TTAGTTGTAATAAGGATGGCGTGGGAGACGAGCAAAACCAGGCAAAAGAT
AGGACTCCTATCATAGGAGAGGACCGATCACTCGAGATATGGTGATCACG
GATGGCAACATCACTCGTTGTCTTGCTGAAGCAACCGACGGCCGGGCAAC
CTTTTCACACCCTGAGCGCTCCAAACCACCACCGCCCTCATCGCATTTCT
CGCACCATCTACAGAGCGCATTAGAAAGGCCTGTGCCAGTATCTGCTTTC
CGCGGTGGAAGTTGAGGACATTTCTAAACTAGGCGTCCTCACATGGCCAG
CCCTCCAGCAGCAACACCCATCTTCCTCCTCCTGTTCCTCTTGGTGCAGT
ACACCACGAACGCTTTTAAGCCCTTGCCCTCGTCGCCATTTTTGTCAGTC
CGGGGCATGCCAGCGTCATCCAAGGCGCGCTGGGCAAAAGAAACAGCCGC
CAAGGAAAAGGCGGCGGTCGCAGCGGCTGCGGCGGCGGCATCCACTCCTG
TCGTTGTACCATCCGCCCGGTCCAGTGTCCACCTCGAGGCACCAACTCGA
ATTCAAGACCTGGTGCGGCTGCTTCACGAGTCGGAGGATCCTCTGTGGGA
GTTGGTCAAGTTTGAAGCGGAAACCTCAGCGGCGCAGGACGAGAAGGCGG
CCGGCCTTATCCAGCTACGAGTGCTCGACCAAGGGGGCATCTACTCGGCT
GCCCGGGACTTTTTGGCCACCAAACTTCAAAGCTCCAATGTGCCGGTACG
TGCATAAGTGAGCGAAAGAATAAAAAGCAATCCTACCAGAATGCCGGGAC
GGACACTTGGCCTTCATCTCCCCTCCTTTTAAAACTCTTACATGCTCGCA
TATCCCCATTCCACTCTCAATCCGATTCACCACTCCAGACGGACAAAATT
AAATTGTTGATTGATTCGGTTTTCCAAGAAGAACCGGACATCATTCAAGA
CTTTCGAGAAGACCTGCTGGTGGCCACGATGCGAGACTCGAGCATCCCCT
CCCTTCTAGCCGCCTTCCTCTTCTCCAAAGGCTACCATGCTGTCGCCACG
TACCGCATTGCCCACTCCGTCTATTGCCAAGGCCGCGAGTCGTTGGCTCG
TTATCTTCAATCTCTCAACTCAGAGCTCTTTGGCGCCGATATCCACCCGG
CCTGCAGCGTTGGACGGGTACGTTGGGGTGTTGTTTGTCTAATAGTGGTT
AATTTTCTAACTTCCTTGCCTATCTCGCAGTTCTCCGATCCCCCTTCCAT
GACGCCCTTTTTTCCCACCCTATTGTTACACATATCTCCAAGGCTCTGTA
CCTTTCGAGTGGAACCTGCGTGGTCATCGGCGAGACGGCCAAGCTGGGCG
ATGACATCATTCTCATGCAAGGCGTGACACTTGGGGGGAACGGTAAGGAA
CGCGGCGATCGGCACCCCAAACTGGGTAGTGGTGTGCTTGTGGCAGCGGG
TTCTACCGTCTTGGGCAACATTCCGATTGGCGATGGTGTCATCATTTCCG
CTGGCTCGGTAGTGCTGCGGCCTGTGCCCGAGTACACAAGGTGCAGTGGC
GTCCCGGCCAAGGTTACCTCAGTGCTTCGCAAACACAAAGACAACGTTTC
GACTATAAGGGACAAAGGCCAGAGCCATTTCATTGAGATTTTTCAAGATC
CGCAGCGAGGAGGTTAAGGGACCACCGCAGTAGGCCAGTCACGCGGCAGA
GCAACATATGACGATGCTAAAAATGGCGGCAACGCCTGCTATCGTAAAAA
GGAAAATCTCGCGTCCACGGCAGCCATGATTAATTACTAGATGGTCTCCG
GCGGACACATCAAGCACAAGCCGTTGTCGCCATCGTTTATGACTGCGGGT
TGAGAAAATTGGGCCTTATCATGTTAGAAATCGAAGAAAAGACCTCCCGC
ATCACCATCCCCTCTATTTTCGTCGTCTACTCCAGAAGGTCGCTTTTCAA
GAACGCACGACAACGACTGCCGCAGCAGCAGCAGCAATAACAACAGTAGC
AGTAGCAGCAGCAGTCGTATCGACAAAGGCAACTTAGTGGTGGTAGCGTT
GTACTGGTCACCATCTATTACAAGGGCACGTCAAGCCCAAAACAAAACAG
ATCGGTCCAATTGAAACGCCTCCAACTTACGTAGAAGTCTCCCTTGGCCT
CCTCTCCTTCTCTGGCTGCTACGATTTTATTTAGGAGGAAGGCGGGGGCG
TACGCCAATACTTTGGGTGTGCAGGTTTCAGATGAGACTAGACACGGATA
AGGAACGAGTCATGAAGGAAAGTACATCACGCACGACTTTGCAAAAAGAC
GAAACGACTTGAATTCGATGAGAGAAGAAATACGCCGTCTGCTGTGCTCG
TATTTGAGGCATCTGCTTGCTTGCGGGCACCCCCCACCAATACCATGCCC
CCAAAAAAAAGGATATCAGTTGAAGTGCCGAAGCAAAAGGAGTGATCTCG
GGTGTAAACAAGAAACCTTG back to topCoding sequence (CDS) from alignment at chr17:476764..480683+ >NO17G01630.1 ID=NO17G01630.1|Name=NO17G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr17:476764..480683+ (Nannochloropsis oceanica) ATGGCCAGCCCTCCAGCAGCAACACCCATCTTCCTCCTCCTGTTCCTCTT GGTGCAGTACACCACGAACGCTTTTAAGCCCTTGCCCTCGTCGCCATTTT TGTCAGTCCGGGGCATGCCAGCGTCATCCAAGGCGCGCTGGGCAAAAGAA ACAGCCGCCAAGGAAAAGGCGGCGGTCGCAGCGGCTGCGGCGGCGGCATC CACTCCTGTCGTTGTACCATCCGCCCGGTCCAGTGTCCACCTCGAGGCAC CAACTCGAATTCAAGACCTGGTGCGGCTGCTTCACGAGTCGGAGGATCCT CTGTGGGAGTTGGTCAAGTTTGAAGCGGAAACCTCAGCGGCGCAGGACGA GAAGGCGGCCGGCCTTATCCAGCTACGAGTGCTCGACCAAGGGGGCATCT ACTCGGCTGCCCGGGACTTTTTGGCCACCAAACTTCAAAGCTCCAATGTG CCGACGGACAAAATTAAATTGTTGATTGATTCGGTTTTCCAAGAAGAACC GGACATCATTCAAGACTTTCGAGAAGACCTGCTGGTGGCCACGATGCGAG ACTCGAGCATCCCCTCCCTTCTAGCCGCCTTCCTCTTCTCCAAAGGCTAC CATGCTGTCGCCACGTACCGCATTGCCCACTCCGTCTATTGCCAAGGCCG CGAGTCGTTGGCTCGTTATCTTCAATCTCTCAACTCAGAGCTCTTTGGCG CCGATATCCACCCGGCCTGCAGCGTTGGACGGGCTCTGTACCTTTCGAGT GGAACCTGCGTGGTCATCGGCGAGACGGCCAAGCTGGGCGATGACATCAT TCTCATGCAAGGCGTGACACTTGGGGGGAACGGTAAGGAACGCGGCGATC GGCACCCCAAACTGGGTAGTGGTGTGCTTGTGGCAGCGGGTTCTACCGTC TTGGGCAACATTCCGATTGGCGATGGTGTCATCATTTCCGCTGGCTCGGT AGTGCTGCGGCCTGTGCCCGAGTACACAAGGTGCAGTGGCGTCCCGGCCA AGGTTACCTCAGTGCTTCGCAAACACAAAGACAACGTTTCGACTATAAGG GACAAAGGCCAGAGCCATTTCATTGAGATTTTTCAAGATCCGCAGCGAGG AGGTTAA back to top
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