NO17G01410.1, NO17G01410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO17G01410.1
Unique Name	NO17G01410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3413
Alignment location	chr17:430492..434048 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr17	genome	chr17:430492..434048 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO17G01410.1 vs.
Match: EWM24268.1 (uncharacterized protein Naga_100020g60 [Nannochloropsis gaditana])

HSP 1 Score: 156.0 bits (393), Expect = 1.800e-34
Identity = 79/113 (69.91%), Postives = 94/113 (83.19%), Query Frame = 0

Query:    6 LQALVGPTQDTLNQHWAQGKAKSFGFQMMMKMGWSDGRGLGRELQGNAKHLTVSKKVDNAGLGSVKDETGNAGWTEASASFDSVLSKLNAHYGGQREAAQKKWEQKEKKRGNK 119
            L++LVGP QDTLNQHW  GK K+FGF+MMMKMGWSDG+GLG+ELQG A H+TV+KKVD+AGLGSV+DETGNAGWTEASA+FDSVLSKLN  Y  Q    ++K   K++ RG K
Sbjct:   13 LKSLVGPMQDTLNQHWVDGKKKNFGFKMMMKMGWSDGQGLGKELQGCATHVTVAKKVDSAGLGSVRDETGNAGWTEASATFDSVLSKLNETYKRQEVPLKRK---KKRARGEK 122

The following BLAST results are available for this feature:

BLAST of NO17G01410.1 vs.

BLAST of NO17G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24268.1	1.800e-34	69.91	uncharacterized protein Naga_100020g60 [Nannochlor...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G01410	NO17G01410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO17G01410.1	NO17G01410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO17G01410.1.cds1	NO17G01410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO17G01410.1.cds2	NO17G01410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:430492..434048-
coding sequence from alignment at chr17:430492..434048-

mRNA sequence

>NO17G01410.1 ID=NO17G01410.1|Name=NO17G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3413bp
GTCCAGTGGGGGTCCAAAACTGTCCTCAAGCATGTCTATTTCCGGTATCC
TCGTCACAACATCATCATCATACTTAAACCACTTAGCATTTCCTGGCTGC
ATAGTCTCGCCTGCCACCGCCTTTTCTGCTGCTGCTGCTTCTGCTGCTGC
TGCTGCAGCAGCATCTTGCTGTGGGAAACCCAGCCGGTCATCCTGCCGGA
CATAGGCGTAGTAATGCCCCGCGTCCACATCCCCACTATGAACCAACACC
GAATGAAGACAATAAGGAAGTGCCACTCTCTCCCCTAAGAGCTGCTGTTC
CTCCTTCGCAAGGTACGGGGACAAATCAAGCGAAGTCGGAAAGAGAAACC
TCTGGTTAACCTTCACCATCGCCCCAGTATGAAAATTATACTCAAACCGC
TTTAAATGAATAGTTAGAACCGGCGGGCACTCCGTAAAGCGTGTAAATCG
TTCCGCGTCTTGCTTGCCATGCCCCTCCGCATCGTACTGATCCGCCCCAA
CCATCATCTCGGGCCTCACGAAGGCGTCCAGTGAATCCTTCAAAGTCGGA
TATCCCTTCACATCCAATTGGACGTCATAAAACTCCTCCTCCCGTGAACT
CTGACACTCCACATTCAAACACCTCGTGGTCGGTCTCGTCTTTCCGCCAA
ACAACGCCTTCACCGTGCCCTCAACACGAGTCCCCTTCATCTTCTCCTCC
AAACGGTCACACAGCACCCGGTTCAATTCCTGCACATCCTGTTGCACATT
ACTCTCACGAATATTCCAGCCAAATGCCCCCGTCAGCTCCTTTGTACTCA
CCGCCTTACTCTCTGTCTGCAATCGAAAGAAGACCCTCTGCAGCGCCAAC
GCCACGCTCCTGCCCTTATCCTCCCCCTCTGTCGGCATCGCGTACACAGC
CCTCCTCAAACTCCGCAAGCTCCACAGAAACTGTAACAGCGAGTTCATGT
AACACGTGGCTCCCTGATTCTTCAACCCCACCATGCCCGTCTCCTTAGCC
GAGTCATAATTTTCCAAATTCCTATAGCCACTTAAATCCTGAATGCTCAC
ATCCACCAAAATTCGTTCATCCGCCGTCATAAACGAGGGATTTTGTTTTT
TCAGCACTTCTTCCGTCAAAAATTTCGGCGACCCCCAATCCGTGCTATTA
AGCGTATATTCATGATTAAGAACTTCAGTGTGATACGGCTTGGGTGAGCG
ATCGCGCAAGGTGAATCTGACCCAGCGACGGCAGTAGGGGTTGGGTGGGG
GATGCTCGGGGTTGGAGGGGTCGATCTCGAGGTAGATTGAATAGCACATG
TCTTTGTGGTTGCCATAGGGAAAATACATGAGCCGCCAGGAGTACCCCCG
CGCGTCTTGCACCCAGGAAGTCACGCATTTGTACGTGTCTGTGTCTTTCG
CTCGCAGTTTCGCTGCTGCGTAGTCGGCTAGGTCGGGGGCAGGCAAGGCG
GCGGTGAACTTCAGCATGCCAGGCTTGACGCAGGCCACCACCACCTGCCC
CACCGCAACGTCCTCGGAACTCGGAAAAACACTGTCGTTGTCCACGTCTG
CGTCCACAACAGCCTTTTCTTTTGCAGGCGGAACGACGGCGGGCTCCGTG
GTGGTGGCGGCGATGGGACTGGCATTGGCACCTTCCATCGGATTTGTCAT
CACGTCAGCTTCTCCTTCCTCCGTGTCCAGGGCCCGTTGGATACCCCCAC
ACCCACTTTGTGGTGGCATCTTCATCTCCATAACTTTGTGTCGTGCCTCG
GGGGAATGCATGGCTCCGTTGCCGCCCTGGTCTGGGTGAAAGTCAGCTGT
CTCCTCCTGAGGCTTGCCTAGCGCTGCAGGCTTCCGGACCGGCGAGGTGG
ATCCCACAGGAGGCATCAGCAGTCGCTAGAAACTTGCCTCGGAAATTCAG
GCGTTCCTGTCACGCGTGGTGCTGGCTGTATGGAGAAGGAAAGAGGGAAA
AATATATATGGGTTCGTAAGTGCCTTACCTAGTACACGGGCGATTGCATT
GAAATTGAGGACGAAGAATTGGGGAGTTCGCTTGCGTGCATGTCGCTCAC
AAGATATGCGGCCAAAACTTGGCCCCGCTTCCTACATGACAAGGCTGGAC
CAGGGTGTGATCGGAATTATGAGTTCATTTTTGGGGCTTGCTTCACCCCT
TGTGTGGCAGGACCCCTTCCGCTCTCATTCCACCCCACCCCCACCATTGA
CACCCCCAGCCTGCACGTATACACAGCCCCGTAGATACACACAATCCAAC
CAGGCGCCCACCAACCATCTAATCGGCCTCACTCCTCGCTTTACCACTAC
TCCATTCATTATAAGGATCCGCCCACTACTCCATTCATTATAAGGATCCG
CCCGCCGCACACGCAACTATCTGGAAGCCGACTATTTGCCCCCCCCCAAA
ATCATGGCGGATGGCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACAC
GCTGAACCAGCACTGGGCCCAAGGCAAGGCCAAAAGCTTCGGCTTCCAAA
TGATGATGAAGATGGGTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTA
CAGGGGAATGCCAAGCACTTGACCGTGAGCAAGAAAGTGGACAACGCTGG
CTTGGGCAGCGTCAAAGACGAAACAGGGAACGCAGGCTGGACAGAGGCCT
CCGCCAGCTTTGACAGCGTTCTCAGCAAACTGAATGCCCACTACGGGGGG
CAACGGGAAGCGGCACAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGG
CAACAAGAGCAGGAAGAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGC
GGCATCCCAAGTTGCTGCAGAGTAAGAACATCCGGAAATACAGCGCGCAT
GACATGCAAGCTATTCTTGGGATTAGATGTGTAGATGCGACACCATCGAG
CCAGGGATCTGGGGAGGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTT
TGGCTGGTGCTTCGAGTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGT
AGGACGAAGGAAAAATGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCAT
TTGTATTAATAGTTGTAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGG
AGGAAACAACCAAGAAGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGAT
ACTGACAGCAAGGAAGGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAA
GAGAAGAGAGGAGAAGGCAAAGACATCGGAGGCGAAAGTTTTATCTACTG
GAGGTAAGAAGAAAAGCAAAAGAAAGAAGGATTGTGAGTGAATGAAGAAA
AATGCCAGTCACTGACCAACAAATATCTGAGAACCCAGGGAAACCTAAGG
GAAATTGAGATGTTGTGAACGAAATAAAGGAATGAAAAAAAATTATTATA
TTAATCTACGAAG

protein sequence of NO17G01410.1

>NO17G01410.1-protein ID=NO17G01410.1-protein|Name=NO17G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MADGILQALVGPTQDTLNQHWAQGKAKSFGFQMMMKMGWSDGRGLGRELQ
GNAKHLTVSKKVDNAGLGSVKDETGNAGWTEASASFDSVLSKLNAHYGGQ
REAAQKKWEQKEKKRGNKSRKKEGGGTASGLLRHPKLLQSKNIRKYSAHD
MQAILGIRCVDATPSSQGSGEGRGEAPSLWSALAGASSGACKKSDDMGSR
TKEKWNKKKRERRNSICINSCSGGEAKEDGKKEETTKKSKKEMVRQDEDT
DSKEGRAEQKQATKRKRREEKAKTSEAKVLSTGGKKKSKRKKDCE*

mRNA from alignment at chr17:430492..434048-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO17G01410.1 ID=NO17G01410.1|Name=NO17G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3557bp|location=Sequence derived from alignment at chr17:430492..434048- (Nannochloropsis oceanica)
GTCCAGTGGGGGTCCAAAACTGTCCTCAAGCATGTCTATTTCCGGTATCC
TCGTCACAACATCATCATCATACTTAAACCACTTAGCATTTCCTGGCTGC
ATAGTCTCGCCTGCCACCGCCTTTTCTGCTGCTGCTGCTTCTGCTGCTGC
TGCTGCAGCAGCATCTTGCTGTGGGAAACCCAGCCGGTCATCCTGCCGGA
CATAGGCGTAGTAATGCCCCGCGTCCACATCCCCACTATGAACCAACACC
GAATGAAGACAATAAGGAAGTGCCACTCTCTCCCCTAAGAGCTGCTGTTC
CTCCTTCGCAAGGTACGGGGACAAATCAAGCGAAGTCGGAAAGAGAAACC
TCTGGTTAACCTTCACCATCGCCCCAGTATGAAAATTATACTCAAACCGC
TTTAAATGAATAGTTAGAACCGGCGGGCACTCCGTAAAGCGTGTAAATCG
TTCCGCGTCTTGCTTGCCATGCCCCTCCGCATCGTACTGATCCGCCCCAA
CCATCATCTCGGGCCTCACGAAGGCGTCCAGTGAATCCTTCAAAGTCGGA
TATCCCTTCACATCCAATTGGACGTCATAAAACTCCTCCTCCCGTGAACT
CTGACACTCCACATTCAAACACCTCGTGGTCGGTCTCGTCTTTCCGCCAA
ACAACGCCTTCACCGTGCCCTCAACACGAGTCCCCTTCATCTTCTCCTCC
AAACGGTCACACAGCACCCGGTTCAATTCCTGCACATCCTGTTGCACATT
ACTCTCACGAATATTCCAGCCAAATGCCCCCGTCAGCTCCTTTGTACTCA
CCGCCTTACTCTCTGTCTGCAATCGAAAGAAGACCCTCTGCAGCGCCAAC
GCCACGCTCCTGCCCTTATCCTCCCCCTCTGTCGGCATCGCGTACACAGC
CCTCCTCAAACTCCGCAAGCTCCACAGAAACTGTAACAGCGAGTTCATGT
AACACGTGGCTCCCTGATTCTTCAACCCCACCATGCCCGTCTCCTTAGCC
GAGTCATAATTTTCCAAATTCCTATAGCCACTTAAATCCTGAATGCTCAC
ATCCACCAAAATTCGTTCATCCGCCGTCATAAACGAGGGATTTTGTTTTT
TCAGCACTTCTTCCGTCAAAAATTTCGGCGACCCCCAATCCGTGCTATTA
AGCGTATATTCATGATTAAGAACTTCAGTGTGATACGGCTTGGGTGAGCG
ATCGCGCAAGGTGAATCTGACCCAGCGACGGCAGTAGGGGTTGGGTGGGG
GATGCTCGGGGTTGGAGGGGTCGATCTCGAGGTAGATTGAATAGCACATG
TCTTTGTGGTTGCCATAGGGAAAATACATGAGCCGCCAGGAGTACCCCCG
CGCGTCTTGCACCCAGGAAGTCACGCATTTGTACGTGTCTGTGTCTTTCG
CTCGCAGTTTCGCTGCTGCGTAGTCGGCTAGGTCGGGGGCAGGCAAGGCG
GCGGTGAACTTCAGCATGCCAGGCTTGACGCAGGCCACCACCACCTGCCC
CACCGCAACGTCCTCGGAACTCGGAAAAACACTGTCGTTGTCCACGTCTG
CGTCCACAACAGCCTTTTCTTTTGCAGGCGGAACGACGGCGGGCTCCGTG
GTGGTGGCGGCGATGGGACTGGCATTGGCACCTTCCATCGGATTTGTCAT
CACGTCAGCTTCTCCTTCCTCCGTGTCCAGGGCCCGTTGGATACCCCCAC
ACCCACTTTGTGGTGGCATCTTCATCTCCATAACTTTGTGTCGTGCCTCG
GGGGAATGCATGGCTCCGTTGCCGCCCTGGTCTGGGTGAAAGTCAGCTGT
CTCCTCCTGAGGCTTGCCTAGCGCTGCAGGCTTCCGGACCGGCGAGGTGG
ATCCCACAGGAGGCATCAGCAGTCGCTAGAAACTTGCCTCGGAAATTCAG
GCGTTCCTGTCACGCGTGGTGCTGGCTGTATGGAGAAGGAAAGAGGGAAA
AATATATATGGGTTCGTAAGTGCCTTACCTAGTACACGGGCGATTGCATT
GAAATTGAGGACGAAGAATTGGGGAGTTCGCTTGCGTGCATGTCGCTCAC
AAGATATGCGGCCAAAACTTGGCCCCGCTTCCTACATGACAAGGCTGGAC
CAGGGTGTGATCGGAATTATGAGTTCATTTTTGGGGCTTGCTTCACCCCT
TGTGTGGCAGGACCCCTTCCGCTCTCATTCCACCCCACCCCCACCATTGA
CACCCCCAGCCTGCACGTATACACAGCCCCGTAGATACACACAATCCAAC
CAGGCGCCCACCAACCATCTAATCGGCCTCACTCCTCGCTTTACCACTAC
TCCATTCATTATAAGGATCCGCCCACTACTCCATTCATTATAAGGATCCG
CCCGCCGCACACGCAACTATCTGGAAGCCGACTATTTGCCCCCCCCCAAA
ATCATGGCGGATGGCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACAC
GCTGAACCAGCACTGGGCCCAAGGTAAATGGATAAATTGATTAAGAGACT
GGATGTGGAGGCATAATAATAATGTACTATGGTCTCTGTCGGGAAGGCTG
CCTTAGCCATCAGCATACCCCGCTGACCCTCTCCTCATCCCCACCACCCA
TCGCCCAATCAAACCAGGCAAGGCCAAAAGCTTCGGCTTCCAAATGATGA
TGAAGATGGGTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTACAGGGG
AATGCCAAGCACTTGACCGTGAGCAAGAAAGTGGACAACGCTGGCTTGGG
CAGCGTCAAAGACGAAACAGGGAACGCAGGCTGGACAGAGGCCTCCGCCA
GCTTTGACAGCGTTCTCAGCAAACTGAATGCCCACTACGGGGGGCAACGG
GAAGCGGCACAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGGCAACAA
GAGCAGGAAGAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGCGGCATC
CCAAGTTGCTGCAGAGTAAGAACATCCGGAAATACAGCGCGCATGACATG
CAAGCTATTCTTGGGATTAGATGTGTAGATGCGACACCATCGAGCCAGGG
ATCTGGGGAGGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTTTGGCTG
GTGCTTCGAGTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGTAGGACG
AAGGAAAAATGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCATTTGTAT
TAATAGTTGTAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGGAGGAAA
CAACCAAGAAGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGATACTGAC
AGCAAGGAAGGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAAGAGAAG
AGAGGAGAAGGCAAAGACATCGGAGGCGAAAGTTTTATCTACTGGAGGTA
AGAAGAAAAGCAAAAGAAAGAAGGATTGTGAGTGAATGAAGAAAAATGCC
AGTCACTGACCAACAAATATCTGAGAACCCAGGGAAACCTAAGGGAAATT
GAGATGTTGTGAACGAAATAAAGGAATGAAAAAAAATTATTATATTAATC
TACGAAG

Coding sequence (CDS) from alignment at chr17:430492..434048-

>NO17G01410.1 ID=NO17G01410.1|Name=NO17G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr17:430492..434048- (Nannochloropsis oceanica)
ATGGCGGATGGCATCTTGCAAGCATTGGTAGGGCCAACGCAAGACACGCT
GAACCAGCACTGGGCCCAAGGCAAGGCCAAAAGCTTCGGCTTCCAAATGA
TGATGAAGATGGGTTGGAGCGATGGAAGGGGTCTGGGAAGGGAGCTACAG
GGGAATGCCAAGCACTTGACCGTGAGCAAGAAAGTGGACAACGCTGGCTT
GGGCAGCGTCAAAGACGAAACAGGGAACGCAGGCTGGACAGAGGCCTCCG
CCAGCTTTGACAGCGTTCTCAGCAAACTGAATGCCCACTACGGGGGGCAA
CGGGAAGCGGCACAAAAGAAGTGGGAGCAGAAAGAAAAGAAGAGGGGCAA
CAAGAGCAGGAAGAAGGAAGGGGGAGGAACGGCTTCAGGGCTCTTGCGGC
ATCCCAAGTTGCTGCAGAGTAAGAACATCCGGAAATACAGCGCGCATGAC
ATGCAAGCTATTCTTGGGATTAGATGTGTAGATGCGACACCATCGAGCCA
GGGATCTGGGGAGGGCAGAGGGGAGGCGCCTTCGCTATGGTCAGCTTTGG
CTGGTGCTTCGAGTGGAGCTTGTAAAAAAAGTGATGATATGGGCAGTAGG
ACGAAGGAAAAATGGAATAAGAAAAAGAGGGAGCGTCGCAACAGCATTTG
TATTAATAGTTGTAGTGGTGGAGAAGCGAAGGAAGACGGAAAAAAGGAGG
AAACAACCAAGAAGAGTAAAAAAGAAATGGTGCGGCAAGACGAGGATACT
GACAGCAAGGAAGGGCGAGCGGAGCAGAAACAAGCCACAAAACGAAAGAG
AAGAGAGGAGAAGGCAAAGACATCGGAGGCGAAAGTTTTATCTACTGGAG
GTAAGAAGAAAAGCAAAAGAAAGAAGGATTGTGAGTGA

Synonyms

Publications