NO17G00980.1, NO17G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00980.1
Unique NameNO17G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1674
Alignment locationchr17:312536..315064 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:312536..315064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00980.1 vs.
Match: EWM21129.1 (tryptophanyl-trna cytoplasmic [Nannochloropsis gaditana])

HSP 1 Score: 572.8 bits (1475), Expect = 1.100e-159
Identity = 296/364 (81.32%), Postives = 324/364 (89.01%), Query Frame = 0 
Query:   32 MATPSELRTPQAVTSALIVKGALANVLGFPIGSTTIGTHYSEGHRVRLTVQIGKAPDPTEAQFIKVAETINALLAANQPVHVLKLPRSQAEETYKKAMYNRHAVPESVTELTIAYIEGLAFSCTGEAVVASTGLVGSITINKTKFRSAKKELEVQYTVE---EAVKGSVAVAEANGVALPTSEAIAVLNSDSVRVAADGP--VEGGNGGG-AEGDGAGGQVVTPWEVEGDQEIDYDRLIKSFGSMRITEDVVSRIERLTGVKCHRFLRRGLFFSHRDLTQLLDMYEKGTKFYLYTGRGPSSESLHLGHLIPFHFTRWLQAAFDVPLVIQLTDDEKFQFKQGLTLEECHRLAYENAKDIIACGFN 390
            MA+PSELRTPQAVTSALIVKGALANVLGFPIG TTIGTHYSEGHRVRLTVQIG+APDPTE QFI+VAETIN +LAANQPVHV KL R +A+ +YK AMYNRHAVPES+TELTIAYIE +AFSCT EAVVASTG+VG+ITINKTKFRSAKKELE+QYTV    E+    +AVA+ +   LP+SEAI++LNSD+VR A+ G    +GGNGG      G GGQVVTPWEVEGDQEIDYD+LIKSFGSMRITE +VSRIERLT  KCHRFLRRGLFFSHRDLTQLLD+YEKGTKFYLYTGRGPSSESLHLGHLIPFHFTR+LQ AFDVPLVIQLTDDEKFQFKQGL LEECHRLAYENAKD+IACGF+
Sbjct:    1 MASPSELRTPQAVTSALIVKGALANVLGFPIGGTTIGTHYSEGHRVRLTVQIGQAPDPTETQFIQVAETINTILAANQPVHVFKLARHRAQTSYKNAMYNRHAVPESITELTIAYIEKIAFSCTAEAVVASTGMVGAITINKTKFRSAKKELEIQYTVSTPSESGPAVLAVAKEDDETLPSSEAISLLNSDTVRQASGGKGNEKGGNGGSIGSASGEGGQVVTPWEVEGDQEIDYDKLIKSFGSMRITESLVSRIERLTNRKCHRFLRRGLFFSHRDLTQLLDLYEKGTKFYLYTGRGPSSESLHLGHLIPFHFTRYLQEAFDVPLVIQLTDDEKFQFKQGLALEECHRLAYENAKDVIACGFD 364
The following BLAST results are available for this feature:
BLAST of NO17G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21129.11.100e-15981.32tryptophanyl-trna cytoplasmic [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00980NO17G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00980.1NO17G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00980.1.cds1NO17G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00980.1.cds2NO17G00980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00980.1.cds3NO17G00980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00980.1.cds4NO17G00980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00980.1.cds5NO17G00980.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00980.1.cds6NO17G00980.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00980.1 ID=NO17G00980.1|Name=NO17G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
ATGCATCACGATATTTCTATGTGCAATGGCAAGGGTTACCTAGTGATGCT
GAAGCGGGTAGCAGCAGCACCAGCAACAACAGCTGCAGCAAATATGGCGA
CGCCCTCCGAGTTGCGGACTCCGCAGGCCGTCACCAGCGCCCTAATTGTC
AAGGGTGCACTTGCCAACGTTCTGGGATTTCCCATCGGCAGCACTACCAT
CGGAACGCATTATTCGGAGGGCCACCGCGTGCGCCTGACAGTCCAAATCG
GCAAAGCCCCCGATCCGACCGAAGCCCAATTCATCAAGGTCGCCGAGACG
ATCAACGCTCTTCTCGCCGCCAATCAGCCCGTGCACGTCCTCAAGCTACC
CCGAAGCCAAGCGGAAGAGACCTACAAAAAAGCCATGTACAATCGGCATG
CCGTTCCTGAGAGCGTGACCGAGCTGACCATCGCGTATATCGAAGGCCTC
GCATTTTCGTGCACGGGCGAGGCTGTGGTAGCTAGTACGGGCCTTGTGGG
CAGTATAACCATCAACAAGACCAAATTTCGTTCAGCCAAGAAGGAATTGG
AGGTTCAGTACACAGTAGAGGAAGCAGTGAAAGGGTCGGTGGCGGTGGCC
GAGGCGAATGGCGTGGCTCTTCCCACGTCTGAAGCAATTGCGGTTTTGAA
TAGCGATTCTGTCCGTGTTGCTGCGGACGGTCCTGTAGAAGGAGGGAACG
GTGGAGGGGCTGAGGGAGATGGGGCAGGGGGGCAAGTGGTGACCCCGTGG
GAGGTGGAGGGCGACCAGGAGATAGATTATGATAGATTGATTAAAAGCTT
CGGGAGCATGCGCATTACAGAGGATGTCGTCTCGCGGATTGAGCGGCTTA
CGGGAGTAAAGTGCCACCGATTCCTGCGCAGGGGGTTATTTTTTTCTCAT
CGGGATTTGACTCAATTGTTGGATATGTACGAAAAGGGGACGAAGTTTTA
CCTGTACACGGGCCGTGGGCCGAGTTCTGAGAGTCTGCACCTGGGGCATT
TGATTCCGTTTCACTTCACCAGGTGGCTGCAGGCGGCGTTCGACGTCCCC
CTGGTGATCCAATTAACAGATGACGAGAAATTCCAGTTCAAGCAGGGCCT
GACTCTAGAGGAATGTCACCGTCTGGCCTATGAAAACGCGAAGGACATTA
TCGCATGCGGCTTCAACGATGCGTATTTCCGCATGACGAGAGATGTGGCC
CCACGATTAGGGTACAAAAAGCCGTCGTTGATTCACTCCAAGTTTTTCCC
GGGACTGGAGGGAAAAGGAGGCAAAATGTCTGCCTCTGCCGAGTCAAGCG
CCATCTACGTCACTGACACGGCCAAGAAAATCAAGCAAAAAATTGGTCGT
GCTTTCTCCGGAGGGCAAGAAACTGCAGACTTACAGAAGGAGTTAGGAGC
CGATTTGGAGGTGGACGTTGCGTATCAATATTTGACTTTTTTCCTCGAAG
ATGACGAGGAGTTGCTGAGATTGGGAGGGAGTACAAAGCGGGGAGGATGA
TGACGGGTCAGGTGAAAGGGCGGTTGATTGAGTTGCTCGGGGGAATGGTG
GGTGAACATCAGGAGAGGAGGGCGGCAGTAACGGATGATATGCTGGCGGA
GTTCATGCGAGTGCGGGAGTTGGAGTTTTAGGGTGAGAGGGGGCCAAAAT
GGAGGGAAGAATATACTCAGGGCC
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protein sequence of NO17G00980.1

>NO17G00980.1-protein ID=NO17G00980.1-protein|Name=NO17G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MHHDISMCNGKGYLVMLKRVAAAPATTAAANMATPSELRTPQAVTSALIV
KGALANVLGFPIGSTTIGTHYSEGHRVRLTVQIGKAPDPTEAQFIKVAET
INALLAANQPVHVLKLPRSQAEETYKKAMYNRHAVPESVTELTIAYIEGL
AFSCTGEAVVASTGLVGSITINKTKFRSAKKELEVQYTVEEAVKGSVAVA
EANGVALPTSEAIAVLNSDSVRVAADGPVEGGNGGGAEGDGAGGQVVTPW
EVEGDQEIDYDRLIKSFGSMRITEDVVSRIERLTGVKCHRFLRRGLFFSH
RDLTQLLDMYEKGTKFYLYTGRGPSSESLHLGHLIPFHFTRWLQAAFDVP
LVIQLTDDEKFQFKQGLTLEECHRLAYENAKDIIACGFNDAYFRMTRDVA
PRLGYKKPSLIHSKFFPGLEGKGGKMSASAESSAIYVTDTAKKIKQKIGR
AFSGGQETADLQKELGADLEVDVAYQYLTFFLEDDEELLRLGGSTKRGG*
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mRNA from alignment at chr17:312536..315064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00980.1 ID=NO17G00980.1|Name=NO17G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2529bp|location=Sequence derived from alignment at chr17:312536..315064+ (Nannochloropsis oceanica)
ATGCATCACGATATTTCTATGTGCAATGGCAAGGGTTACCTAGTGATGCT
GAAGCGGTCAGGGTCATGCCCTCCGTAAAACGGAGACCGTCCACATGCAG
TCCTTTCCTACCGCACATGTATCATCATCGCCATCCGCATGACCCGCCCC
GCCCCGTCTCTCAATTCTCGATAATTCTTCTGTATGCAAACATAAATACA
GGGTAGCAGCAGCACCAGCAACAACAGCTGCAGCAAATATGGCGACGCCC
TCCGAGTTGCGGACTCCGCAGGCCGTCACCAGCGCCCTAATTGTCAAGGT
TAAAAAAAAATACTGTCCCCCTTCCCCATCCATAGACCTCCCCACCCCTC
CTTCCCCCTCACGCCCTCCCACCGACTATCCACGCACATAGGGTGCACTT
GCCAACGTTCTGGGATTTCCCATCGGCAGCACTACCATCGGAACGCATTA
TTCGGAGGGCCACCGCGTGCGCCTGACAGTCCAAATCGGCAAAGCCCCCG
ATCCGACCGAAGCCCAATTCATCAAGGTCGCCGAGACGATCAACGCTCTT
CTCGCCGCCAATCAGCCCGTGCACGTCCTCAAGCTACCCCGAAGCCAAGC
GGAAGAGACCTACAAAAAAGCCATGTACAATCGGCATGCCGTTCCTGAGA
GCGTGACCGAGCTGACCATCGCGTATATCGAAGGCCTCGCATTTTCGTGC
ACGGGCGAGGCTGTGGTAGCTAGTACGGGCCTTGTGGGCAGTATAACCAT
CAACAAGACCAAATTTCGTTCAGCCAAGAAGGAATTGGAGGTTCAGTACA
CAGTAGAGGAAGCAGTGAAAGGGTCGGTGGCGGTGGCCGAGGCGAATGGC
GTGGCTCTTCCCACGTCTGAAGCAATTGCGGTTTTGAATAGCGATTCTGT
CCGTGTTGCTGCGGACGGTCCTGTAGAAGGAGGGAACGGTGGAGGGGCTG
AGGGAGATGGGGCAGGGGGGCAAGTGGTGACCCCGTGGGAGGTGGAGGGC
GACCAGGAGATAGATTATGATAGATTGATTAAAAGCTTCGGGAGCATGCG
CATTACAGAGGATGTCGTCTCGCGGATTGAGCGGCTTACGGGAGTAAAGT
GCCACCGATTCCTGCGCAGGGGGTTATTTTTTTCTCATCGGGATTTGACT
CAATTGTTGGATATGTACGAAAAGGGGACGAAGTTTTACCTGTACACGGG
CCGTGGGCCGAGTTCTGAGAGTCTGCACCTGGGGCATTTGATTCCGTTTC
ACTTCACCAGGTGGCTGCAGGCGGCGTTCGACGTCCCCCTGGTGATCCAA
TTAACAGATGACGAGAAATTCCAGGTACCTTGATAGAACCCTCCCTTCCT
CCCTCCTTCCCTCCCTTCACTCCTCCTTTAACCCTCTTAGAAACTGACCC
CGATAACATCGGCCCCTAAACCTTCCCTCCCCCTCCCTCCCTCCTATCCT
TCATTCTTACTTTCACTGTCACAGTTCAAGCAGGGCCTGACTCTAGAGGA
ATGTCACCGTCTGGCCTATGAAAACGCGAAGGACATTATCGCATGCGGCT
TCAACGTAAAAAAAACCTTCATCTTCTCCGACCTTGATTACATCGGGCAT
TTGTACCCGACGGTTTTAAAAAATTCAAAAATTGGTCACCTTCAATCAAG
CCCGTGGGATCTTTGGCTTCACTGAATCAGATTCTTGCGGGAAGATAGCC
TTTCCCGCTGTGCAGGCTGCACCGAGCTTTGTTTCGAGTTTCCCTGTGGT
GCTGGGAAGGGGAGGAAGGGAGGGAAGGGGGGAGGGAAGGAGGACATGGC
GTGTTTGATTCCGTGTGCGATCGACCAGGATGCGTATTTCCGCATGACGA
GAGATGTGGCCCCACGATTAGGGTACAAAAAGCCGTCGTTGATTCACTCC
AAGTTTTTCCCGGGACTGGAGGTATGAAAAGGGGGGGAGAGAGGAAGGGA
GGGAGGCAGGATGGCCCGGTGAGAACGAAACGCACGCGATGGGCTTCTCT
CGCTTCTCACTGTTCTTGATTTTACGTAAACCATTAGCATTCAGAAACAC
GTACTTACAACCCCACCCCCCCCCCCTACTTTCCCTTCCTTCCATTTGGG
CCTCCTTCCCTTTAGGGAAAAGGAGGCAAAATGTCTGCCTCTGCCGAGTC
AAGCGCCATCTACGTCACTGACACGGCCAAGAAAATCAAGCAAAAAATTG
GTCGTGCTTTCTCCGGAGGGCAAGAAACTGCAGACTTACAGAAGGAGTTA
GGAGCCGATTTGGAGGTGGACGTTGCGTATCAATATTTGACTTTTTTCCT
CGAAGATGACGAGGAGTTGCTGAGATTGGGAGGGAGTACAAAGCGGGGAG
GATGATGACGGGTCAGGTGAAAGGGCGGTTGATTGAGTTGCTCGGGGGAA
TGGTGGGTGAACATCAGGAGAGGAGGGCGGCAGTAACGGATGATATGCTG
GCGGAGTTCATGCGAGTGCGGGAGTTGGAGTTTTAGGGTGAGAGGGGGCC
AAAATGGAGGGAAGAATATACTCAGGGCC
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Coding sequence (CDS) from alignment at chr17:312536..315064+

>NO17G00980.1 ID=NO17G00980.1|Name=NO17G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1500bp|location=Sequence derived from alignment at chr17:312536..315064+ (Nannochloropsis oceanica)
ATGCATCACGATATTTCTATGTGCAATGGCAAGGGTTACCTAGTGATGCT
GAAGCGGGTAGCAGCAGCACCAGCAACAACAGCTGCAGCAAATATGGCGA
CGCCCTCCGAGTTGCGGACTCCGCAGGCCGTCACCAGCGCCCTAATTGTC
AAGGGTGCACTTGCCAACGTTCTGGGATTTCCCATCGGCAGCACTACCAT
CGGAACGCATTATTCGGAGGGCCACCGCGTGCGCCTGACAGTCCAAATCG
GCAAAGCCCCCGATCCGACCGAAGCCCAATTCATCAAGGTCGCCGAGACG
ATCAACGCTCTTCTCGCCGCCAATCAGCCCGTGCACGTCCTCAAGCTACC
CCGAAGCCAAGCGGAAGAGACCTACAAAAAAGCCATGTACAATCGGCATG
CCGTTCCTGAGAGCGTGACCGAGCTGACCATCGCGTATATCGAAGGCCTC
GCATTTTCGTGCACGGGCGAGGCTGTGGTAGCTAGTACGGGCCTTGTGGG
CAGTATAACCATCAACAAGACCAAATTTCGTTCAGCCAAGAAGGAATTGG
AGGTTCAGTACACAGTAGAGGAAGCAGTGAAAGGGTCGGTGGCGGTGGCC
GAGGCGAATGGCGTGGCTCTTCCCACGTCTGAAGCAATTGCGGTTTTGAA
TAGCGATTCTGTCCGTGTTGCTGCGGACGGTCCTGTAGAAGGAGGGAACG
GTGGAGGGGCTGAGGGAGATGGGGCAGGGGGGCAAGTGGTGACCCCGTGG
GAGGTGGAGGGCGACCAGGAGATAGATTATGATAGATTGATTAAAAGCTT
CGGGAGCATGCGCATTACAGAGGATGTCGTCTCGCGGATTGAGCGGCTTA
CGGGAGTAAAGTGCCACCGATTCCTGCGCAGGGGGTTATTTTTTTCTCAT
CGGGATTTGACTCAATTGTTGGATATGTACGAAAAGGGGACGAAGTTTTA
CCTGTACACGGGCCGTGGGCCGAGTTCTGAGAGTCTGCACCTGGGGCATT
TGATTCCGTTTCACTTCACCAGGTGGCTGCAGGCGGCGTTCGACGTCCCC
CTGGTGATCCAATTAACAGATGACGAGAAATTCCAGTTCAAGCAGGGCCT
GACTCTAGAGGAATGTCACCGTCTGGCCTATGAAAACGCGAAGGACATTA
TCGCATGCGGCTTCAACGATGCGTATTTCCGCATGACGAGAGATGTGGCC
CCACGATTAGGGTACAAAAAGCCGTCGTTGATTCACTCCAAGTTTTTCCC
GGGACTGGAGGGAAAAGGAGGCAAAATGTCTGCCTCTGCCGAGTCAAGCG
CCATCTACGTCACTGACACGGCCAAGAAAATCAAGCAAAAAATTGGTCGT
GCTTTCTCCGGAGGGCAAGAAACTGCAGACTTACAGAAGGAGTTAGGAGC
CGATTTGGAGGTGGACGTTGCGTATCAATATTTGACTTTTTTCCTCGAAG
ATGACGAGGAGTTGCTGAGATTGGGAGGGAGTACAAAGCGGGGAGGATGA
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Synonyms
Publications