NO17G00610.1, NO17G00610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00610.1
Unique NameNO17G00610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1908
Alignment locationchr17:218353..220260 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:218353..220260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO17G00610.1 vs.
Match: EWM21164.1 (Enhancer of polycomb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 902.1 bits (2330), Expect = 9.600e-259
Identity = 474/656 (72.26%), Postives = 531/656 (80.95%), Query Frame = 0 
Query:    1 MKREVKVRTVDIWKALPVVRSLEDAEQRGNNG------DDDDDLMQQQAPAPRIRGLERSSSTS-----NNGTPAPASLESAKS-ITATGLAQPKAKEIPVPQIDTSAEYDSVMVEASFKLPESYIRTKKLPLLPPGVEIEGLEYNLEFEDEEWLSGHKVIGPSGEMAGALDADRMEKMMDELEKVTGAGETTSLADAESVLEARLGMQPIGSNKTVIAEVWGYWAAKRARLKKPLLRRFWPITSINDSNPHLVFRPREKEKYKLRKHRKNDGEAYRRLQLLRRDFGQVQHLLNMVRKREQVKLARLKLQEEQYLQTIAEMCGQARKPKIPKESMYTGREGGGGGDFKLKIRLPSMGLVIGEDGRPRKKRVRDEMEGMEAGGGGGRRGQVAVELNPEQERLRKSVACGFREREAAMATPDYLPSFMEEFKFRHQGLETLPPAHRTNKSFLPFADEASTTYTWRASRRGQGGKIGHVRSGLVAAPRCPPIDYDGEEDTSVRYRCRARLARGGRIVFDRVPIAPGLPAPLTL----AVGE-----GVEGGAAAAASEEENPAAVDSTRMSLGSSVLLSAGTKIPHLDKYPTVDLVAGSLFQYPKRYREISQLLDDNEEEVLEINPAAPSDPDSFLALPPRPKPPETDAVVTLRFALPV 636
            MKREVK RTVDIW+ALPVVRSLED E RG+NG      +DD++ M QQAP  R RGLERSSSTS       G+ + ++L+  K  I  + + + KAKEIPVPQI+TSA+YD+V+ EASFKLP+SYIRTKKLPLLPPGVEIEGLEYNLE EDEEWL GHK+IGP GEMAGA DAD++EKM+DELEK TGAGE  +L DAESVLEARLGMQPIGSNKTVIAEVW YW+ KRARLKKPLLRRFWPITSINDSNPHLVFRPREKE+YKLRKHRKNDGEAYRRLQLLRRDFGQV+ LLNMVR+REQ+KLARLKLQEE YLQT+AEMCGQARKPKIPKE++Y G   GGGG+ KLKIRLPSMGL  GEDGRPRKKR+RDEME ME    GGRRG    + NPEQERLR++VACGFRERE A+ATPDYLPSFME F FRH G    PP H  ++S+LPF+DEASTTY WR  R G GGK+GHVRSGL+ APRCPPIDYDG EDTS+RYRCRAR+ RGGR+VFDRVPIAP LP PL L      GE     G E G  A   E+EN A       +L SSVLLSAG ++P LD+YP VDL+ GSLF+YP R+REIS LLDD EEEVLEINPAAPSDPD  L +P +P PPETDA+  LRFALPV
Sbjct:    1 MKREVKTRTVDIWRALPVVRSLEDTECRGSNGGVGGMEEDDENGMSQQAPPTRTRGLERSSSTSAVKSGTGGSMSSSNLDQEKDKILTSKIPEIKAKEIPVPQIETSADYDTVVAEASFKLPDSYIRTKKLPLLPPGVEIEGLEYNLELEDEEWLKGHKIIGPRGEMAGAADADKLEKMIDELEKATGAGEAITLMDAESVLEARLGMQPIGSNKTVIAEVWAYWSGKRARLKKPLLRRFWPITSINDSNPHLVFRPREKERYKLRKHRKNDGEAYRRLQLLRRDFGQVEQLLNMVRRREQIKLARLKLQEEMYLQTLAEMCGQARKPKIPKEAVYAG--SGGGGELKLKIRLPSMGL--GEDGRPRKKRLRDEMERMEP---GGRRGGPPQDANPEQERLRRAVACGFREREGALATPDYLPSFMEAFGFRHHGQAVPPPPHGMSRSWLPFSDEASTTYGWRGLREGSGGKVGHVRSGLLTAPRCPPIDYDG-EDTSIRYRCRARMGRGGRMVFDRVPIAPRLPKPLMLMETGKPGEEVEEGGGESGRDAGVEEQENVAPEQCAPRALTSSVLLSAGLEVPQLDRYPDVDLLGGSLFKYPTRFREISHLLDDTEEEVLEINPAAPSDPDPLLVIPSKPAPPETDALAVLRFALPV 648
The following BLAST results are available for this feature:
BLAST of NO17G00610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21164.19.600e-25972.26Enhancer of polycomb-like protein [Nannochloropsis... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00610NO17G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00610.1NO17G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00610.1.cds1NO17G00610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00610.1 ID=NO17G00610.1|Name=NO17G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp
ATGAAGCGTGAAGTCAAAGTCCGCACAGTCGACATCTGGAAGGCTCTTCC
CGTCGTCCGCTCTTTGGAAGATGCGGAGCAACGCGGCAATAACGGCGACG
ATGATGACGACCTTATGCAGCAGCAAGCCCCAGCACCCCGAATTCGTGGA
CTCGAGCGCTCGTCCAGCACTAGCAATAATGGAACCCCTGCTCCTGCCAG
TCTCGAAAGTGCCAAAAGCATTACGGCAACAGGCCTGGCTCAGCCGAAAG
CCAAAGAGATCCCCGTCCCGCAAATAGATACTTCGGCGGAATATGATAGT
GTCATGGTGGAGGCTTCATTTAAGCTGCCGGAGTCGTATATCCGCACGAA
GAAACTCCCACTCCTCCCCCCCGGGGTCGAGATTGAGGGATTAGAGTACA
ATTTAGAGTTTGAGGACGAAGAGTGGTTGAGTGGGCATAAGGTCATTGGC
CCGAGCGGTGAGATGGCCGGGGCGCTTGATGCGGATAGGATGGAGAAGAT
GATGGATGAGCTTGAGAAGGTGACAGGGGCAGGCGAGACCACATCTCTTG
CAGACGCGGAGTCCGTGCTGGAAGCACGGTTGGGCATGCAACCAATCGGG
TCAAACAAGACGGTGATTGCGGAGGTGTGGGGGTACTGGGCGGCGAAACG
CGCGAGATTAAAAAAGCCATTACTGCGACGGTTTTGGCCTATTACGTCCA
TTAATGACTCAAACCCCCATTTGGTCTTTAGGCCCCGTGAGAAGGAAAAG
TATAAGCTGCGGAAGCATCGAAAGAACGATGGGGAGGCTTATCGACGCTT
GCAGTTGTTAAGGAGGGATTTCGGGCAGGTGCAACATCTGCTTAATATGG
TCAGAAAACGGGAGCAAGTCAAGCTGGCCAGGCTCAAGCTGCAGGAGGAG
CAGTACCTGCAGACTATTGCTGAGATGTGCGGGCAGGCACGCAAACCGAA
GATACCGAAGGAATCGATGTATACAGGGAGGGAGGGTGGAGGGGGAGGGG
ACTTCAAGCTCAAGATTCGCTTGCCCTCCATGGGATTGGTCATAGGGGAG
GACGGACGACCGAGGAAGAAGCGAGTGAGAGACGAGATGGAGGGGATGGA
AGCTGGAGGAGGAGGAGGGCGACGAGGACAGGTCGCTGTGGAACTGAACC
CTGAGCAGGAGCGGTTGCGGAAGTCGGTCGCGTGTGGGTTCAGGGAGAGG
GAGGCTGCGATGGCCACGCCTGATTACTTGCCTTCGTTTATGGAAGAGTT
CAAATTTCGGCATCAGGGGCTTGAAACGCTTCCGCCGGCGCATCGGACGA
ACAAATCATTCTTGCCGTTTGCAGATGAGGCGTCCACGACGTATACCTGG
CGGGCATCGAGGCGGGGGCAGGGAGGAAAGATTGGGCACGTACGCAGTGG
GTTGGTGGCGGCGCCGCGCTGTCCTCCGATTGATTATGACGGGGAGGAAG
ACACGAGTGTACGGTATCGGTGTCGGGCGCGCTTGGCAAGAGGGGGTAGG
ATTGTGTTTGACCGAGTTCCGATTGCCCCGGGCTTGCCCGCGCCCTTGAC
ATTGGCGGTTGGAGAAGGAGTAGAGGGAGGAGCCGCAGCAGCGGCGAGCG
AGGAGGAGAATCCAGCGGCGGTCGATTCGACAAGGATGTCATTAGGCTCT
TCGGTATTGTTGAGTGCAGGGACCAAAATCCCGCATCTGGATAAATATCC
GACAGTGGACTTGGTGGCTGGCTCGCTATTCCAATACCCCAAACGTTATC
GAGAAATCAGCCAGCTGCTTGATGACAACGAGGAGGAGGTGTTGGAGATA
AATCCCGCAGCGCCTTCGGATCCGGACTCGTTTTTGGCCCTGCCGCCGCG
ACCAAAGCCTCCTGAGACGGATGCGGTGGTAACTTTGAGATTTGCTTTAC
CGGTCTAA
back to top

protein sequence of NO17G00610.1

>NO17G00610.1-protein ID=NO17G00610.1-protein|Name=NO17G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MKREVKVRTVDIWKALPVVRSLEDAEQRGNNGDDDDDLMQQQAPAPRIRG
LERSSSTSNNGTPAPASLESAKSITATGLAQPKAKEIPVPQIDTSAEYDS
VMVEASFKLPESYIRTKKLPLLPPGVEIEGLEYNLEFEDEEWLSGHKVIG
PSGEMAGALDADRMEKMMDELEKVTGAGETTSLADAESVLEARLGMQPIG
SNKTVIAEVWGYWAAKRARLKKPLLRRFWPITSINDSNPHLVFRPREKEK
YKLRKHRKNDGEAYRRLQLLRRDFGQVQHLLNMVRKREQVKLARLKLQEE
QYLQTIAEMCGQARKPKIPKESMYTGREGGGGGDFKLKIRLPSMGLVIGE
DGRPRKKRVRDEMEGMEAGGGGGRRGQVAVELNPEQERLRKSVACGFRER
EAAMATPDYLPSFMEEFKFRHQGLETLPPAHRTNKSFLPFADEASTTYTW
RASRRGQGGKIGHVRSGLVAAPRCPPIDYDGEEDTSVRYRCRARLARGGR
IVFDRVPIAPGLPAPLTLAVGEGVEGGAAAAASEEENPAAVDSTRMSLGS
SVLLSAGTKIPHLDKYPTVDLVAGSLFQYPKRYREISQLLDDNEEEVLEI
NPAAPSDPDSFLALPPRPKPPETDAVVTLRFALPV*
back to top

mRNA from alignment at chr17:218353..220260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00610.1 ID=NO17G00610.1|Name=NO17G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at chr17:218353..220260+ (Nannochloropsis oceanica)
ATGAAGCGTGAAGTCAAAGTCCGCACAGTCGACATCTGGAAGGCTCTTCC
CGTCGTCCGCTCTTTGGAAGATGCGGAGCAACGCGGCAATAACGGCGACG
ATGATGACGACCTTATGCAGCAGCAAGCCCCAGCACCCCGAATTCGTGGA
CTCGAGCGCTCGTCCAGCACTAGCAATAATGGAACCCCTGCTCCTGCCAG
TCTCGAAAGTGCCAAAAGCATTACGGCAACAGGCCTGGCTCAGCCGAAAG
CCAAAGAGATCCCCGTCCCGCAAATAGATACTTCGGCGGAATATGATAGT
GTCATGGTGGAGGCTTCATTTAAGCTGCCGGAGTCGTATATCCGCACGAA
GAAACTCCCACTCCTCCCCCCCGGGGTCGAGATTGAGGGATTAGAGTACA
ATTTAGAGTTTGAGGACGAAGAGTGGTTGAGTGGGCATAAGGTCATTGGC
CCGAGCGGTGAGATGGCCGGGGCGCTTGATGCGGATAGGATGGAGAAGAT
GATGGATGAGCTTGAGAAGGTGACAGGGGCAGGCGAGACCACATCTCTTG
CAGACGCGGAGTCCGTGCTGGAAGCACGGTTGGGCATGCAACCAATCGGG
TCAAACAAGACGGTGATTGCGGAGGTGTGGGGGTACTGGGCGGCGAAACG
CGCGAGATTAAAAAAGCCATTACTGCGACGGTTTTGGCCTATTACGTCCA
TTAATGACTCAAACCCCCATTTGGTCTTTAGGCCCCGTGAGAAGGAAAAG
TATAAGCTGCGGAAGCATCGAAAGAACGATGGGGAGGCTTATCGACGCTT
GCAGTTGTTAAGGAGGGATTTCGGGCAGGTGCAACATCTGCTTAATATGG
TCAGAAAACGGGAGCAAGTCAAGCTGGCCAGGCTCAAGCTGCAGGAGGAG
CAGTACCTGCAGACTATTGCTGAGATGTGCGGGCAGGCACGCAAACCGAA
GATACCGAAGGAATCGATGTATACAGGGAGGGAGGGTGGAGGGGGAGGGG
ACTTCAAGCTCAAGATTCGCTTGCCCTCCATGGGATTGGTCATAGGGGAG
GACGGACGACCGAGGAAGAAGCGAGTGAGAGACGAGATGGAGGGGATGGA
AGCTGGAGGAGGAGGAGGGCGACGAGGACAGGTCGCTGTGGAACTGAACC
CTGAGCAGGAGCGGTTGCGGAAGTCGGTCGCGTGTGGGTTCAGGGAGAGG
GAGGCTGCGATGGCCACGCCTGATTACTTGCCTTCGTTTATGGAAGAGTT
CAAATTTCGGCATCAGGGGCTTGAAACGCTTCCGCCGGCGCATCGGACGA
ACAAATCATTCTTGCCGTTTGCAGATGAGGCGTCCACGACGTATACCTGG
CGGGCATCGAGGCGGGGGCAGGGAGGAAAGATTGGGCACGTACGCAGTGG
GTTGGTGGCGGCGCCGCGCTGTCCTCCGATTGATTATGACGGGGAGGAAG
ACACGAGTGTACGGTATCGGTGTCGGGCGCGCTTGGCAAGAGGGGGTAGG
ATTGTGTTTGACCGAGTTCCGATTGCCCCGGGCTTGCCCGCGCCCTTGAC
ATTGGCGGTTGGAGAAGGAGTAGAGGGAGGAGCCGCAGCAGCGGCGAGCG
AGGAGGAGAATCCAGCGGCGGTCGATTCGACAAGGATGTCATTAGGCTCT
TCGGTATTGTTGAGTGCAGGGACCAAAATCCCGCATCTGGATAAATATCC
GACAGTGGACTTGGTGGCTGGCTCGCTATTCCAATACCCCAAACGTTATC
GAGAAATCAGCCAGCTGCTTGATGACAACGAGGAGGAGGTGTTGGAGATA
AATCCCGCAGCGCCTTCGGATCCGGACTCGTTTTTGGCCCTGCCGCCGCG
ACCAAAGCCTCCTGAGACGGATGCGGTGGTAACTTTGAGATTTGCTTTAC
CGGTCTAA
back to top

Coding sequence (CDS) from alignment at chr17:218353..220260+

>NO17G00610.1 ID=NO17G00610.1|Name=NO17G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at chr17:218353..220260+ (Nannochloropsis oceanica)
ATGAAGCGTGAAGTCAAAGTCCGCACAGTCGACATCTGGAAGGCTCTTCC
CGTCGTCCGCTCTTTGGAAGATGCGGAGCAACGCGGCAATAACGGCGACG
ATGATGACGACCTTATGCAGCAGCAAGCCCCAGCACCCCGAATTCGTGGA
CTCGAGCGCTCGTCCAGCACTAGCAATAATGGAACCCCTGCTCCTGCCAG
TCTCGAAAGTGCCAAAAGCATTACGGCAACAGGCCTGGCTCAGCCGAAAG
CCAAAGAGATCCCCGTCCCGCAAATAGATACTTCGGCGGAATATGATAGT
GTCATGGTGGAGGCTTCATTTAAGCTGCCGGAGTCGTATATCCGCACGAA
GAAACTCCCACTCCTCCCCCCCGGGGTCGAGATTGAGGGATTAGAGTACA
ATTTAGAGTTTGAGGACGAAGAGTGGTTGAGTGGGCATAAGGTCATTGGC
CCGAGCGGTGAGATGGCCGGGGCGCTTGATGCGGATAGGATGGAGAAGAT
GATGGATGAGCTTGAGAAGGTGACAGGGGCAGGCGAGACCACATCTCTTG
CAGACGCGGAGTCCGTGCTGGAAGCACGGTTGGGCATGCAACCAATCGGG
TCAAACAAGACGGTGATTGCGGAGGTGTGGGGGTACTGGGCGGCGAAACG
CGCGAGATTAAAAAAGCCATTACTGCGACGGTTTTGGCCTATTACGTCCA
TTAATGACTCAAACCCCCATTTGGTCTTTAGGCCCCGTGAGAAGGAAAAG
TATAAGCTGCGGAAGCATCGAAAGAACGATGGGGAGGCTTATCGACGCTT
GCAGTTGTTAAGGAGGGATTTCGGGCAGGTGCAACATCTGCTTAATATGG
TCAGAAAACGGGAGCAAGTCAAGCTGGCCAGGCTCAAGCTGCAGGAGGAG
CAGTACCTGCAGACTATTGCTGAGATGTGCGGGCAGGCACGCAAACCGAA
GATACCGAAGGAATCGATGTATACAGGGAGGGAGGGTGGAGGGGGAGGGG
ACTTCAAGCTCAAGATTCGCTTGCCCTCCATGGGATTGGTCATAGGGGAG
GACGGACGACCGAGGAAGAAGCGAGTGAGAGACGAGATGGAGGGGATGGA
AGCTGGAGGAGGAGGAGGGCGACGAGGACAGGTCGCTGTGGAACTGAACC
CTGAGCAGGAGCGGTTGCGGAAGTCGGTCGCGTGTGGGTTCAGGGAGAGG
GAGGCTGCGATGGCCACGCCTGATTACTTGCCTTCGTTTATGGAAGAGTT
CAAATTTCGGCATCAGGGGCTTGAAACGCTTCCGCCGGCGCATCGGACGA
ACAAATCATTCTTGCCGTTTGCAGATGAGGCGTCCACGACGTATACCTGG
CGGGCATCGAGGCGGGGGCAGGGAGGAAAGATTGGGCACGTACGCAGTGG
GTTGGTGGCGGCGCCGCGCTGTCCTCCGATTGATTATGACGGGGAGGAAG
ACACGAGTGTACGGTATCGGTGTCGGGCGCGCTTGGCAAGAGGGGGTAGG
ATTGTGTTTGACCGAGTTCCGATTGCCCCGGGCTTGCCCGCGCCCTTGAC
ATTGGCGGTTGGAGAAGGAGTAGAGGGAGGAGCCGCAGCAGCGGCGAGCG
AGGAGGAGAATCCAGCGGCGGTCGATTCGACAAGGATGTCATTAGGCTCT
TCGGTATTGTTGAGTGCAGGGACCAAAATCCCGCATCTGGATAAATATCC
GACAGTGGACTTGGTGGCTGGCTCGCTATTCCAATACCCCAAACGTTATC
GAGAAATCAGCCAGCTGCTTGATGACAACGAGGAGGAGGTGTTGGAGATA
AATCCCGCAGCGCCTTCGGATCCGGACTCGTTTTTGGCCCTGCCGCCGCG
ACCAAAGCCTCCTGAGACGGATGCGGTGGTAACTTTGAGATTTGCTTTAC
CGGTCTAA
back to top
Synonyms
Publications