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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr17 | genome | chr17:168625..171228 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO17G00450.1 vs.
Match: XP_005855629.1 (hypothetical protein NGA_0599300 [Nannochloropsis gaditana CCMP526]; EKU20735.1 hypothetical protein NGA_0599300 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 740.0 bits (1909), Expect = 6.300e-210 Identity = 385/490 (78.57%), Postives = 411/490 (83.88%), Query Frame = 0
Query: 162 LQDSTA---AVVRDAAIHLCRFVKGGGRNSAAAAALVASAAAEQEK---------KDKASTLVTVKLLFLLFYGSLGAVMPYLPVYYHSLGLPDKQIGQLGAITPAVTFVVAPLWGALADQTGRHKDVLLLTFVFSVVSRLLFIWRTTFGWLSILVFCTAVLNAPVRPLLDSSVLNLLEDKREYGKQRLWGQFGFGLAGCIVGPLLMSHKFGGYKAAFYVHALISLPTLMIMRRFNPTP-ASLPSSP------------APALKKDGKKRIMIAAGAKGSVGGAVERKPHFKEGLGIVIRNPDALIFFFLVFVIGVSSGIIENFAYKRLREVGGEGTVMGVSRFFSSVTGVPMFWFSGHVTKRLSVMGVLILSLCSYMLRFFIYASISNPWQGLPAEALRGFTFAAMWASSTYYTHKISPPGLSATMLGFLNGMYGGLGQSTGALIGGHLSQRYGTPRTFVLSGLADLVVVGLFGTYWWLHPNATRLKEE 627
LQD TA A + D LCR V+GG + + A+ A+ ASTLVTVKLLFLLFYGSLGAVMPYLPVYYHSLGLPDKQIG LGAITPAVTFVVAPLWGALADQTGRHKDVLL TFV SVVSRLLFIWRTTFGWL+ILVFCTAVLNAPVRPLLDSSVLNLLEDKREYGKQRLWGQFGFGLAGCIVGP LM+HKFGGYKAAFYVHALISLPTL+IMRRFNPTP A PSSP + K++G + + + A + + KP F+EGLGIV+RNPDALIFFFLVFVIGVSSG+IENFAYKRLREVGGEGTVMGVSRFFSSVTGVPMFWFSG+VT+RLSVMGVLILSLCSY+LRFFIYASI+NPWQGLPAEALRGFTFAAMWASSTYYTHKISPPGLSATMLGFLNGMYGGLGQSTGALIGG LS R GTPRTFVL+GLAD+VVV FGTYWWLHPNATRLKEE
Sbjct: 36 LQDKTAESLAALDDTVSQLCRRVRGGSVSERSVPAVPKGASPSTAPVALQTGDGPPSMASTLVTVKLLFLLFYGSLGAVMPYLPVYYHSLGLPDKQIGMLGAITPAVTFVVAPLWGALADQTGRHKDVLLFTFVASVVSRLLFIWRTTFGWLAILVFCTAVLNAPVRPLLDSSVLNLLEDKREYGKQRLWGQFGFGLAGCIVGPCLMNHKFGGYKAAFYVHALISLPTLLIMRRFNPTPPAPAPSSPPLPVASTNKSEKSSMAKEEGPGAVALPSKAPSAALSSQPAKPRFREGLGIVVRNPDALIFFFLVFVIGVSSGVIENFAYKRLREVGGEGTVMGVSRFFSSVTGVPMFWFSGNVTRRLSVMGVLILSLCSYILRFFIYASITNPWQGLPAEALRGFTFAAMWASSTYYTHKISPPGLSATMLGFLNGMYGGLGQSTGALIGGGLSHRVGTPRTFVLAGLADIVVVICFGTYWWLHPNATRLKEE 525
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO17G00450.1 ID=NO17G00450.1|Name=NO17G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2604bp
TCGCAAACACAACAAAGCGCGAGCGTAGCTAGGTGGACAAGTGGCTGTGC
CTGGTGTTTTCCTTTTTAGGTGCAAGTTGCAGCACCAGCCAGTAGCCTCA
CGCGGCAGCCCATTTCCTTCATCACCCTCCCACGTCAACGTCGTGCCCCG
TCTGGCCTGGTCTTTGGTGCCTGCTTTTTCCAGCCAGAACCTGAAGCGCG
TTCAGTTGCGGGGCGATGAGAAGACCAGTAAGCAACCGAGGGAGAGGTAT
CAGGCCCCAGCACCTCGCCCTTGTCCTTATTGCCCTCCTCCTGGGCATTG
CCGTGGGGGTAGTGACCGACAGCAGCATCACAAGCAGCAGCAGCAGCAGC
AGCGGTGCATCGATACACTTGGGGAGCGGCAGCCGCAGCACATTGGGAAA
GGGAGGAGGGAAGAGAAGGCGGAATGGTTTGGAGGAGACCAGGCGGGAAG
AGGACAATAAGGAGGAGCAGCAGCTGCATGAGGGTGCGGACTGGGGAAGA
AGAGGCAGAATACAAATGCCGAGGTATTCGCCCACTTCTACCTCGTCAAC
AAGAAGAGTCTGTTCTAAAGCTGTTGATATAAGGTGCAGGAACAGTGAGG
GAGCGACTTCCAGAAGATCACCATCTGCCGCCGCCGCTGCCGCGTCCCCC
GACTCCTTCTTTCACCTGTCTTACCACAAGAAACAACTGCAGCAAGGGTT
GCAGGATTCTACAGCAGCAGTCGTACGTGACGCAGCCATCCACCTCTGTC
GCTTCGTCAAGGGTGGAGGCCGCAACTCCGCCGCTGCTGCCGCCCTGGTC
GCCAGCGCCGCCGCCGAGCAAGAGAAGAAGGACAAGGCGTCTACGTTGGT
CACAGTCAAATTATTATTTCTGTTGTTTTACGGCTCCTTGGGTGCGGTGA
TGCCTTACTTGCCCGTGTACTACCACTCGCTTGGCTTGCCCGACAAGCAG
ATTGGGCAGCTGGGAGCGATTACGCCCGCGGTGACGTTTGTGGTGGCGCC
TCTGTGGGGGGCATTAGCGGATCAGACGGGCCGGCATAAGGACGTGTTGC
TGTTAACCTTCGTGTTTAGCGTGGTGTCGAGGTTGTTGTTTATATGGAGA
ACCACGTTTGGATGGTTGAGTATTTTAGTATTTTGCACCGCGGTGCTTAA
TGCCCCGGTACGGCCCTTGCTGGACAGCAGCGTCTTAAACTTGTTGGAGG
ACAAACGTGAGTACGGGAAGCAGCGGTTATGGGGTCAGTTCGGGTTTGGC
CTGGCCGGGTGCATCGTGGGACCCTTGCTAATGAGCCATAAATTTGGAGG
ATATAAGGCCGCGTTCTACGTGCATGCTTTGATCTCCCTCCCGACCTTGA
TGATTATGAGGCGATTCAACCCTACCCCTGCCTCCCTCCCTTCCTCACCG
GCGCCTGCCTTGAAGAAGGACGGGAAGAAGCGGATAATGATTGCAGCAGG
AGCCAAAGGATCGGTGGGGGGAGCAGTGGAGAGGAAGCCTCACTTTAAGG
AGGGGCTGGGTATTGTAATTCGGAATCCGGACGCGCTGATCTTTTTCTTT
TTGGTTTTTGTCATTGGGGTCTCGAGTGGCATAATCGAAAATTTCGCCTA
CAAGCGGTTGAGGGAGGTAGGGGGGGAAGGGACGGTAATGGGCGTGTCTC
GTTTTTTTTCCTCAGTGACAGGCGTGCCTATGTTTTGGTTCTCGGGCCAC
GTGACCAAGCGTCTGTCGGTCATGGGGGTGTTGATCCTGTCTCTGTGCTC
GTACATGCTGCGGTTCTTCATCTATGCCTCTATCTCGAACCCGTGGCAAG
GCCTGCCTGCTGAGGCCTTGAGGGGCTTTACGTTTGCAGCCATGTGGGCG
AGTTCAACGTACTACACACACAAAATCTCTCCGCCGGGACTGAGCGCCAC
GATGTTGGGCTTCTTGAATGGCATGTATGGAGGTCTAGGGCAGTCGACTG
GGGCATTGATAGGTGGCCATTTGAGCCAGCGGTATGGCACGCCACGGACG
TTTGTATTGTCGGGCTTGGCGGATTTGGTTGTGGTGGGTCTGTTTGGGAC
GTATTGGTGGTTGCACCCGAATGCCACGCGGTTGAAGGAGGAGTAAATCG
CTAGCGAGTCGCCTTGGTAATGGTCTCTCTTTATTCACTTAGGAATCAGT
GACGCTTGCGAAACGCAGGCCGATGGGAGATTGGAGTGAGAGAGTACGAA
GGGGAGGGAGGGAGGGAGGGAGGCAAGGCGAGTTAGACGGATGTATGATA
GTGTGGTCGCAGCTCCATGAGGATGATGAGTAAAATTAAGAGCGCGCGCA
AGGATAAGAAGAGAAGTGAGGATTGCAAGTGGAGAGAAGAAAAGTACCGA
CAGTCGAGAGCATGAACGACGATTTTTGTGCGAAGCAAAATAAACAGTAA
ATGCAATTTCCAACCACCACAACAGAGCGACAGAAGAGGAACATCTTTCC
AAACCTAAATAAAGTCAACACGAAAAAGAAGAATCAAACCAGAGAACACA
TGAAAGACACACAGCAGAGTGAGGGTGTAGGGGAGGGTCTGGACTCACCC
TGCCTCTCTCTTCTGGTTTTGACGCATGCTATGAATACTAAGCAGTCAAT
GATA back to topprotein sequence of NO17G00450.1 >NO17G00450.1-protein ID=NO17G00450.1-protein|Name=NO17G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MRRPVSNRGRGIRPQHLALVLIALLLGIAVGVVTDSSITSSSSSSSGASI
HLGSGSRSTLGKGGGKRRRNGLEETRREEDNKEEQQLHEGADWGRRGRIQ
MPRYSPTSTSSTRRVCSKAVDIRCRNSEGATSRRSPSAAAAAASPDSFFH
LSYHKKQLQQGLQDSTAAVVRDAAIHLCRFVKGGGRNSAAAAALVASAAA
EQEKKDKASTLVTVKLLFLLFYGSLGAVMPYLPVYYHSLGLPDKQIGQLG
AITPAVTFVVAPLWGALADQTGRHKDVLLLTFVFSVVSRLLFIWRTTFGW
LSILVFCTAVLNAPVRPLLDSSVLNLLEDKREYGKQRLWGQFGFGLAGCI
VGPLLMSHKFGGYKAAFYVHALISLPTLMIMRRFNPTPASLPSSPAPALK
KDGKKRIMIAAGAKGSVGGAVERKPHFKEGLGIVIRNPDALIFFFLVFVI
GVSSGIIENFAYKRLREVGGEGTVMGVSRFFSSVTGVPMFWFSGHVTKRL
SVMGVLILSLCSYMLRFFIYASISNPWQGLPAEALRGFTFAAMWASSTYY
THKISPPGLSATMLGFLNGMYGGLGQSTGALIGGHLSQRYGTPRTFVLSG
LADLVVVGLFGTYWWLHPNATRLKEE* back to topmRNA from alignment at chr17:168625..171228+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO17G00450.1 ID=NO17G00450.1|Name=NO17G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2604bp|location=Sequence derived from alignment at chr17:168625..171228+ (Nannochloropsis oceanica)
TCGCAAACACAACAAAGCGCGAGCGTAGCTAGGTGGACAAGTGGCTGTGC
CTGGTGTTTTCCTTTTTAGGTGCAAGTTGCAGCACCAGCCAGTAGCCTCA
CGCGGCAGCCCATTTCCTTCATCACCCTCCCACGTCAACGTCGTGCCCCG
TCTGGCCTGGTCTTTGGTGCCTGCTTTTTCCAGCCAGAACCTGAAGCGCG
TTCAGTTGCGGGGCGATGAGAAGACCAGTAAGCAACCGAGGGAGAGGTAT
CAGGCCCCAGCACCTCGCCCTTGTCCTTATTGCCCTCCTCCTGGGCATTG
CCGTGGGGGTAGTGACCGACAGCAGCATCACAAGCAGCAGCAGCAGCAGC
AGCGGTGCATCGATACACTTGGGGAGCGGCAGCCGCAGCACATTGGGAAA
GGGAGGAGGGAAGAGAAGGCGGAATGGTTTGGAGGAGACCAGGCGGGAAG
AGGACAATAAGGAGGAGCAGCAGCTGCATGAGGGTGCGGACTGGGGAAGA
AGAGGCAGAATACAAATGCCGAGGTATTCGCCCACTTCTACCTCGTCAAC
AAGAAGAGTCTGTTCTAAAGCTGTTGATATAAGGTGCAGGAACAGTGAGG
GAGCGACTTCCAGAAGATCACCATCTGCCGCCGCCGCTGCCGCGTCCCCC
GACTCCTTCTTTCACCTGTCTTACCACAAGAAACAACTGCAGCAAGGGTT
GCAGGATTCTACAGCAGCAGTCGTACGTGACGCAGCCATCCACCTCTGTC
GCTTCGTCAAGGGTGGAGGCCGCAACTCCGCCGCTGCTGCCGCCCTGGTC
GCCAGCGCCGCCGCCGAGCAAGAGAAGAAGGACAAGGCGTCTACGTTGGT
CACAGTCAAATTATTATTTCTGTTGTTTTACGGCTCCTTGGGTGCGGTGA
TGCCTTACTTGCCCGTGTACTACCACTCGCTTGGCTTGCCCGACAAGCAG
ATTGGGCAGCTGGGAGCGATTACGCCCGCGGTGACGTTTGTGGTGGCGCC
TCTGTGGGGGGCATTAGCGGATCAGACGGGCCGGCATAAGGACGTGTTGC
TGTTAACCTTCGTGTTTAGCGTGGTGTCGAGGTTGTTGTTTATATGGAGA
ACCACGTTTGGATGGTTGAGTATTTTAGTATTTTGCACCGCGGTGCTTAA
TGCCCCGGTACGGCCCTTGCTGGACAGCAGCGTCTTAAACTTGTTGGAGG
ACAAACGTGAGTACGGGAAGCAGCGGTTATGGGGTCAGTTCGGGTTTGGC
CTGGCCGGGTGCATCGTGGGACCCTTGCTAATGAGCCATAAATTTGGAGG
ATATAAGGCCGCGTTCTACGTGCATGCTTTGATCTCCCTCCCGACCTTGA
TGATTATGAGGCGATTCAACCCTACCCCTGCCTCCCTCCCTTCCTCACCG
GCGCCTGCCTTGAAGAAGGACGGGAAGAAGCGGATAATGATTGCAGCAGG
AGCCAAAGGATCGGTGGGGGGAGCAGTGGAGAGGAAGCCTCACTTTAAGG
AGGGGCTGGGTATTGTAATTCGGAATCCGGACGCGCTGATCTTTTTCTTT
TTGGTTTTTGTCATTGGGGTCTCGAGTGGCATAATCGAAAATTTCGCCTA
CAAGCGGTTGAGGGAGGTAGGGGGGGAAGGGACGGTAATGGGCGTGTCTC
GTTTTTTTTCCTCAGTGACAGGCGTGCCTATGTTTTGGTTCTCGGGCCAC
GTGACCAAGCGTCTGTCGGTCATGGGGGTGTTGATCCTGTCTCTGTGCTC
GTACATGCTGCGGTTCTTCATCTATGCCTCTATCTCGAACCCGTGGCAAG
GCCTGCCTGCTGAGGCCTTGAGGGGCTTTACGTTTGCAGCCATGTGGGCG
AGTTCAACGTACTACACACACAAAATCTCTCCGCCGGGACTGAGCGCCAC
GATGTTGGGCTTCTTGAATGGCATGTATGGAGGTCTAGGGCAGTCGACTG
GGGCATTGATAGGTGGCCATTTGAGCCAGCGGTATGGCACGCCACGGACG
TTTGTATTGTCGGGCTTGGCGGATTTGGTTGTGGTGGGTCTGTTTGGGAC
GTATTGGTGGTTGCACCCGAATGCCACGCGGTTGAAGGAGGAGTAAATCG
CTAGCGAGTCGCCTTGGTAATGGTCTCTCTTTATTCACTTAGGAATCAGT
GACGCTTGCGAAACGCAGGCCGATGGGAGATTGGAGTGAGAGAGTACGAA
GGGGAGGGAGGGAGGGAGGGAGGCAAGGCGAGTTAGACGGATGTATGATA
GTGTGGTCGCAGCTCCATGAGGATGATGAGTAAAATTAAGAGCGCGCGCA
AGGATAAGAAGAGAAGTGAGGATTGCAAGTGGAGAGAAGAAAAGTACCGA
CAGTCGAGAGCATGAACGACGATTTTTGTGCGAAGCAAAATAAACAGTAA
ATGCAATTTCCAACCACCACAACAGAGCGACAGAAGAGGAACATCTTTCC
AAACCTAAATAAAGTCAACACGAAAAAGAAGAATCAAACCAGAGAACACA
TGAAAGACACACAGCAGAGTGAGGGTGTAGGGGAGGGTCTGGACTCACCC
TGCCTCTCTCTTCTGGTTTTGACGCATGCTATGAATACTAAGCAGTCAAT
GATA back to topCoding sequence (CDS) from alignment at chr17:168625..171228+ >NO17G00450.1 ID=NO17G00450.1|Name=NO17G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr17:168625..171228+ (Nannochloropsis oceanica)
ATGAGAAGACCAGTAAGCAACCGAGGGAGAGGTATCAGGCCCCAGCACCT
CGCCCTTGTCCTTATTGCCCTCCTCCTGGGCATTGCCGTGGGGGTAGTGA
CCGACAGCAGCATCACAAGCAGCAGCAGCAGCAGCAGCGGTGCATCGATA
CACTTGGGGAGCGGCAGCCGCAGCACATTGGGAAAGGGAGGAGGGAAGAG
AAGGCGGAATGGTTTGGAGGAGACCAGGCGGGAAGAGGACAATAAGGAGG
AGCAGCAGCTGCATGAGGGTGCGGACTGGGGAAGAAGAGGCAGAATACAA
ATGCCGAGGTATTCGCCCACTTCTACCTCGTCAACAAGAAGAGTCTGTTC
TAAAGCTGTTGATATAAGGTGCAGGAACAGTGAGGGAGCGACTTCCAGAA
GATCACCATCTGCCGCCGCCGCTGCCGCGTCCCCCGACTCCTTCTTTCAC
CTGTCTTACCACAAGAAACAACTGCAGCAAGGGTTGCAGGATTCTACAGC
AGCAGTCGTACGTGACGCAGCCATCCACCTCTGTCGCTTCGTCAAGGGTG
GAGGCCGCAACTCCGCCGCTGCTGCCGCCCTGGTCGCCAGCGCCGCCGCC
GAGCAAGAGAAGAAGGACAAGGCGTCTACGTTGGTCACAGTCAAATTATT
ATTTCTGTTGTTTTACGGCTCCTTGGGTGCGGTGATGCCTTACTTGCCCG
TGTACTACCACTCGCTTGGCTTGCCCGACAAGCAGATTGGGCAGCTGGGA
GCGATTACGCCCGCGGTGACGTTTGTGGTGGCGCCTCTGTGGGGGGCATT
AGCGGATCAGACGGGCCGGCATAAGGACGTGTTGCTGTTAACCTTCGTGT
TTAGCGTGGTGTCGAGGTTGTTGTTTATATGGAGAACCACGTTTGGATGG
TTGAGTATTTTAGTATTTTGCACCGCGGTGCTTAATGCCCCGGTACGGCC
CTTGCTGGACAGCAGCGTCTTAAACTTGTTGGAGGACAAACGTGAGTACG
GGAAGCAGCGGTTATGGGGTCAGTTCGGGTTTGGCCTGGCCGGGTGCATC
GTGGGACCCTTGCTAATGAGCCATAAATTTGGAGGATATAAGGCCGCGTT
CTACGTGCATGCTTTGATCTCCCTCCCGACCTTGATGATTATGAGGCGAT
TCAACCCTACCCCTGCCTCCCTCCCTTCCTCACCGGCGCCTGCCTTGAAG
AAGGACGGGAAGAAGCGGATAATGATTGCAGCAGGAGCCAAAGGATCGGT
GGGGGGAGCAGTGGAGAGGAAGCCTCACTTTAAGGAGGGGCTGGGTATTG
TAATTCGGAATCCGGACGCGCTGATCTTTTTCTTTTTGGTTTTTGTCATT
GGGGTCTCGAGTGGCATAATCGAAAATTTCGCCTACAAGCGGTTGAGGGA
GGTAGGGGGGGAAGGGACGGTAATGGGCGTGTCTCGTTTTTTTTCCTCAG
TGACAGGCGTGCCTATGTTTTGGTTCTCGGGCCACGTGACCAAGCGTCTG
TCGGTCATGGGGGTGTTGATCCTGTCTCTGTGCTCGTACATGCTGCGGTT
CTTCATCTATGCCTCTATCTCGAACCCGTGGCAAGGCCTGCCTGCTGAGG
CCTTGAGGGGCTTTACGTTTGCAGCCATGTGGGCGAGTTCAACGTACTAC
ACACACAAAATCTCTCCGCCGGGACTGAGCGCCACGATGTTGGGCTTCTT
GAATGGCATGTATGGAGGTCTAGGGCAGTCGACTGGGGCATTGATAGGTG
GCCATTTGAGCCAGCGGTATGGCACGCCACGGACGTTTGTATTGTCGGGC
TTGGCGGATTTGGTTGTGGTGGGTCTGTTTGGGACGTATTGGTGGTTGCA
CCCGAATGCCACGCGGTTGAAGGAGGAGTAA back to top
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