NO17G00300.1, NO17G00300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO17G00300.1
Unique NameNO17G00300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1600
Alignment locationchr17:111943..115294 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr17genomechr17:111943..115294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO17G00300.1 vs.
Match: EWM21201.1 (salicylate 1-monooxygenase, partial [Nannochloropsis gaditana])

HSP 1 Score: 270.8 bits (691), Expect = 8.800e-69
Identity = 156/250 (62.40%), Postives = 178/250 (71.20%), Query Frame = 0 
Query:    1 MPPARLALLVVVLSHLISVRASNTPSASASSSSSFGARMASTFTRGGASPPSSTSRSEDESPAIDVAIVGGGIGGLATALALQTLAPHLSFRLYERSPTLRGGEGTALTMWPNGLSALGAIDAKLLKRVKAAGSVIRKQTFETPAQSVTEDTGIFESKYKEPLLSVFWQTLHTQLAQAVLEGRREGGREGGGGD-PVVVMGKACVDVVALGEEEEGEEEAGGEGGRVLLMFDDGSRVKAQCILAADGVHS 250
            MP  R  LL       + + A    +  ASS+S  GA     F R G S   +     D++  +DVAIVGGGIGGLATALALQ LAP LSF LYERSPTLRGGEGTALT+WPNGLSALGAIDA LL +VK+AGSVIRKQTF TPA++VTEDTG F S Y EPLLSVFW+ LH QLA+AV EG +EGG+EGGG D   ++MGKACVDVV          E G EGGRV L+F DGS V+AQC+LAADGVHS
Sbjct:    1 MPQERRHLLFAACFTFLILLAGLGHTTMASSASLSGASRTDIFPRQGGSATRAAPLPNDDTEVLDVAIVGGGIGGLATALALQKLAPELSFCLYERSPTLRGGEGTALTLWPNGLSALGAIDAALLAQVKSAGSVIRKQTFNTPARNVTEDTGTFSSLYGEPLLSVFWKHLHGQLARAVREGGKEGGKEGGGDDRGSILMGKACVDVVPF-------PEGGREGGRVQLLFADGSTVRAQCVLAADGVHS 243
The following BLAST results are available for this feature:
BLAST of NO17G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21201.18.800e-6962.40salicylate 1-monooxygenase, partial [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G00300NO17G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO17G00300.1NO17G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO17G00300.1.cds1NO17G00300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds2NO17G00300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds3NO17G00300.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds4NO17G00300.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds5NO17G00300.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds6NO17G00300.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds7NO17G00300.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds8NO17G00300.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds9NO17G00300.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds10NO17G00300.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO17G00300.1.cds11NO17G00300.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO17G00300.1 ID=NO17G00300.1|Name=NO17G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1600bp
ACAGCTCCATTGACAAGCCAAAGAAGCAGCAAAAGCAGCCGCAGCAGATG
CCGCCAGCGCGCCTGGCCCTCCTGGTCGTCGTTCTTTCCCACTTAATCAG
TGTCCGAGCCAGCAACACACCCTCCGCCTCCGCTTCATCGTCGTCGTCTT
TCGGGGCCCGTATGGCCAGCACGTTCACCCGTGGCGGCGCTTCCCCCCCC
AGCTCGACCTCACGTTCCGAAGACGAGTCACCTGCGATCGACGTCGCGAT
CGTCGGCGGTGGCATTGGCGGCCTGGCCACAGCCCTGGCTCTTCAAACCC
TCGCCCCGCACCTTTCCTTTCGGCTTTATGAGCGGTCTCCGACGTTGCGA
GGAGGAGAAGGCACGGCATTGACCATGTGGCCCAACGGCTTGTCGGCTCT
CGGAGCGATTGATGCCAAGCTCCTCAAGAGGGTCAAAGCCGCCGGCAGCG
TAATTCGCAAGCAAACGTTTGAAACGCCCGCCCAAAGCGTTACGGAAGAC
ACGGGCATTTTCGAGTCCAAGTACAAGGAGCCCCTCCTCTCCGTCTTCTG
GCAAACCCTGCACACGCAACTGGCGCAGGCCGTGCTGGAGGGACGGAGGG
AGGGAGGGAGGGAGGGAGGGGGAGGGGACCCGGTCGTTGTGATGGGAAAG
GCATGTGTGGACGTCGTGGCGCTGGGAGAAGAGGAGGAGGGGGAAGAGGA
GGCAGGAGGGGAGGGAGGGCGGGTGCTGCTGATGTTTGATGACGGCTCGA
GGGTGAAGGCCCAATGCATCTTGGCAGCCGATGGCGTGCACTCAGTGCTC
CGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGCCTCAT
TTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAGATGATGG
GGAAGATTAACACTGAACCGAGCAAGCTCATCCACTGGCAGCCCTGCGGG
GAGAAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCC
CATTCGTCGCGACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGCACG
AGTACGCTGACTTTCCCGACATTCTGGGAATGATTGAAGCGACGCCCGCA
GAGGGCATCTTGGAGCGTCCAGTGATAGACCGCGCGCCCATCACTCAGTG
GTCATACCTAGACGGCAGAGTCCTGCTGATTGGCGATGCCGCCCATGCCA
TGATCCTCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGGACGCAGTG
TACATCGCCTCATACCTCAGGGACGCCTACGCCCTTTTTCCCAAGAATAA
AGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCA
AGCATTGCACTGACATTCAGCTGGAGTCAGAAACGTACGCCAAAAACGCC
TACGGGGCGCCTCGCACTGGTGCTGCCATTCCTACTTCTAAGGACGGAGG
GAAGGACGGAGGGAAGGAGGGGGGGGGAGAACGGAAGTTGGGCGGCTATC
GCTTGGTGAAATTTGCGTTGGTGCCCTTCGCTGAGGCATGGAGGAAGGGA
GAAGACGGGGGAAATCAGTGTACAGTGGGAGGGAAGGGGTAGGGGAGGGG
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protein sequence of NO17G00300.1

>NO17G00300.1-protein ID=NO17G00300.1-protein|Name=NO17G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MPPARLALLVVVLSHLISVRASNTPSASASSSSSFGARMASTFTRGGASP
PSSTSRSEDESPAIDVAIVGGGIGGLATALALQTLAPHLSFRLYERSPTL
RGGEGTALTMWPNGLSALGAIDAKLLKRVKAAGSVIRKQTFETPAQSVTE
DTGIFESKYKEPLLSVFWQTLHTQLAQAVLEGRREGGREGGGGDPVVVMG
KACVDVVALGEEEEGEEEAGGEGGRVLLMFDDGSRVKAQCILAADGVHSV
LRQKFVGDGKPREHGRLIYRSVIPYPATDREEMMGKINTEPSKLIHWQPC
GEKNTYWAVIKKGGASPPIRRDGNPTRMKQWLLHEYADFPDILGMIEATP
AEGILERPVIDRAPITQWSYLDGRVLLIGDAAHAMILSVGQGANTALEDA
VYIASYLRDAYALFPKNKGKAVQAAFEAFQNVRVKHCTDIQLESETYAKN
AYGAPRTGAAIPTSKDGGKDGGKEGGGERKLGGYRLVKFALVPFAEAWRK
GEDGGNQCTVGGKG*
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mRNA from alignment at chr17:111943..115294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO17G00300.1 ID=NO17G00300.1|Name=NO17G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=3352bp|location=Sequence derived from alignment at chr17:111943..115294- (Nannochloropsis oceanica)
ACAGCTCCATTGACAAGCCAAAGAAGCAGCAAAAGCAGCCGCAGCAGATG
CCGCCAGCGCGCCTGGCCCTCCTGGTCGTCGTTCTTTCCCACTTAATCAG
GTACTTAACTTGTCATTGCCTCCCCCTCCCTCTTAGTCTAACCCACAAAC
CCCGCCACGCACCTCGATCCGACACATGCAGTGTCCGAGCCAGCAACACA
CCCTCCGCCTCCGCTTCATCGTCGTCGTCTTTCGGGGCCCGTATGGCCAG
CACGTTCACCCGTGGCGGCGCTTCCCCCCCCAGGTATGCTCCTTCCTCCA
TCCCCTCCTCCCCTTCCTCCCTCCCTCTCTCGCTTCCCGCAGTGCACCAC
ACGTTGGCATTTTACCGGCACATTTTAGAGTACATCTTTCCTGGTCCCTT
ACATTCGTGCTCATTCCCCTTTCCTCCCTTCATCCCTCCCTGTCCCTCTC
CCTAGCTCGACCTCACGTTCCGAAGACGAGTCACCTGCGATCGACGTCGC
GATCGTCGGCGGTGGCATTGGCGGCCTGGCCACAGCCCTGGCTCTTCAAA
CCCTCGCCCCGCACCTTTCCTTTCGGCTTTATGAGCGGTCTCCGACGTTG
CGAGGAGGAGAAGGCACGGCATTGACCATGTGGCCCAACGGCTTGTCGGC
TCTCGGAGCGATTGATGCCAAGCTCCTCAAGAGGGTAGGACGGGAGGGAT
GGAGAGGGGGAGGGAGGGAGGGGACGAGGGAGGGAAGAAATCACAGATGA
AACGAGGGAGTGAGTTCTGTGCTCTTCTTTCGGGAACGAAAAGGGGCAAA
TGGGAGAAAGGAGGGTGGGAAGGCACCGAGGAGGGGGAAGAGGAGGAGGA
GCACTCTTTCGCGTGCTTTTAATTTTAGCTTACCAGCCCTCCTCCCCTCT
CTCACTCCCTCCCTCCCTCCCTCCTCCTCCCTCCTCCTCCCTCCTCCTTA
GGTCAAAGCCGCCGGCAGCGTAATTCGCAAGCAAACGTTTGAAACGCCCG
CCCAAAGCGTTACGGAAGACACGGGTGGGTAAGCTTTCCCTCCCTCCCTC
CCTCCCTCCCTCTCTCCCATCCCTCCTTCCCTCCCTTCCTCTTGCAGGCA
TTTTCGAGTCCAAGTACAAGGAGCCCCTCCTCTCCGTCTTCTGGCAAACC
CTGCACACGCAACTGGCGCAGGCCGTGCTGGAGGGACGGAGGGAGGGAGG
GAGGGAGGGAGGGGGAGGGGACCCGGTCGTTGTGATGGGAAAGGCATGTG
TGGACGTCGTGGCGCTGGGAGAAGAGGAGGAGGGGGAAGAGGAGGCAGGA
GGGGAGGGAGGGCGGGTGCTGCTGATGTTTGATGACGGCTCGAGGGTGAA
GGCCCAATGCATCTTGGCAGCCGATGGCGTGCACTCAGGTCGGGAGGGAG
GGAGGGAGGGAGGAAGGGGGGGGGGGGGGGGATTGCCGATAGTGAGGGAG
GGATCTTCACCTTGTCCATCTGCCATATCATCCTTCCCTCACTCCCTCCC
TTCCTCCCTCCCTCCCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAG
CCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGC
TACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGGTAGG
GAGGGAGGGAGGGAGGGAGGGATTGTACGATGACGAGAGGACAAAAGGTG
ACGACCACCTGTGTCCCCTCCCCTCCTCCTTTCCTCCCTCCCTCCCTCCC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTGGGTTCAGTGTTAATCTTCCC
TTCCTCCTTTCCTCCCTCCCTCCTTCAGCAAGCTCATCCACTGGCAGCCC
TGCGGGGAGAAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGTGCCTC
TCCTCCCATTCGTCGCGACGGTAATCCTACCCGGATGAAGCAATGGCTGT
TGCACGAGTACGCTGACTTTCCCGACATTCTGGGAATGATTGAAGGTAGG
TGTAGGCATGCCTTCCCTCCCTCCCTCCCTCGCACCCTCTTACCTTCCTG
TGGCCTCGAAGTCGGCAAGTGGTGCGAGGAGACTACCTATACTCCCTCCC
ATCCATGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCACCTTTCGCAGCGA
CGCCCGCAGAGGGCATCTTGGAGCGTCCAGTGATAGACCGCGCGCCCATC
ACTCAGTGGTCATACCTAGACGGCAGAGTCCTGCTGATTGGCGATGCCGT
GAGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CCATCACGGACCATCGAGGACGCTTCCTACTCTTTCTTCACCCCTTCCCC
TCCCTCCCTCCCTCCCTCCCTCCCGTCCTCCTTCAGGCCCATGCCATGAT
CCTCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGGACGCAGTGTACA
TCGCCTCATACCTCAGGTTGGCACGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAAGAGGGGGTCGTCTAGATGGCCTCATACCTCAGGTTGATAC
GGAGGGAGGGAGGGAGGAAGGGAGGGAGGGGGGGAAGAGGGGGAAGAGAG
GGCGAGAAAGACAGAAAGGCAGCGTCGATTTTCGCACATTTATCCCATCC
ATTTGCACGTCACGTTCCACATGCCACAACATGAGGTCGTCGTCTCTCAA
GCCTACTCTCCCTCCGTCCCTCCCTCCCTCCCTTCCTCCATCTTTCCTCA
GGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCG
GCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCA
GGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGA
AGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGG
AAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCAT
GTATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGA
GAACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCT
TTCCACTTCCCTTAACTGCCAGCTGGAGTCAGAAACGTACGCCAAAAACG
CCTACGGGGCGCCTCGCACTGGTGCTGCCATTCCTACTTCTAAGGACGGA
GGGAAGGACGGAGGGAAGGAGGGGGGGGGAGAACGGAAGTTGGGCGGCTA
TCGCTTGGTGAAATTTGCGTTGGTGCCCTTCGCTGAGGCATGGAGGAAGG
GAGAAGACGGGGGAAATCAGTGTACAGTGGGAGGGAAGGGGTAGGGGAGG
GG
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Coding sequence (CDS) from alignment at chr17:111943..115294-

>NO17G00300.1 ID=NO17G00300.1|Name=NO17G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=1545bp|location=Sequence derived from alignment at chr17:111943..115294- (Nannochloropsis oceanica)
ATGCCGCCAGCGCGCCTGGCCCTCCTGGTCGTCGTTCTTTCCCACTTAAT
CAGTGTCCGAGCCAGCAACACACCCTCCGCCTCCGCTTCATCGTCGTCGT
CTTTCGGGGCCCGTATGGCCAGCACGTTCACCCGTGGCGGCGCTTCCCCC
CCCAGCTCGACCTCACGTTCCGAAGACGAGTCACCTGCGATCGACGTCGC
GATCGTCGGCGGTGGCATTGGCGGCCTGGCCACAGCCCTGGCTCTTCAAA
CCCTCGCCCCGCACCTTTCCTTTCGGCTTTATGAGCGGTCTCCGACGTTG
CGAGGAGGAGAAGGCACGGCATTGACCATGTGGCCCAACGGCTTGTCGGC
TCTCGGAGCGATTGATGCCAAGCTCCTCAAGAGGGTCAAAGCCGCCGGCA
GCGTAATTCGCAAGCAAACGTTTGAAACGCCCGCCCAAAGCGTTACGGAA
GACACGGGCATTTTCGAGTCCAAGTACAAGGAGCCCCTCCTCTCCGTCTT
CTGGCAAACCCTGCACACGCAACTGGCGCAGGCCGTGCTGGAGGGACGGA
GGGAGGGAGGGAGGGAGGGAGGGGGAGGGGACCCGGTCGTTGTGATGGGA
AAGGCATGTGTGGACGTCGTGGCGCTGGGAGAAGAGGAGGAGGGGGAAGA
GGAGGCAGGAGGGGAGGGAGGGCGGGTGCTGCTGATGTTTGATGACGGCT
CGAGGGTGAAGGCCCAATGCATCTTGGCAGCCGATGGCGTGCACTCAGTG
CTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGCCT
CATTTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAGATGA
TGGGGAAGATTAACACTGAACCGAGCAAGCTCATCCACTGGCAGCCCTGC
GGGGAGAAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCC
TCCCATTCGTCGCGACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGC
ACGAGTACGCTGACTTTCCCGACATTCTGGGAATGATTGAAGCGACGCCC
GCAGAGGGCATCTTGGAGCGTCCAGTGATAGACCGCGCGCCCATCACTCA
GTGGTCATACCTAGACGGCAGAGTCCTGCTGATTGGCGATGCCGCCCATG
CCATGATCCTCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGGACGCA
GTGTACATCGCCTCATACCTCAGGGACGCCTACGCCCTTTTTCCCAAGAA
TAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTGCGGG
TCAAGCATTGCACTGACATTCAGCTGGAGTCAGAAACGTACGCCAAAAAC
GCCTACGGGGCGCCTCGCACTGGTGCTGCCATTCCTACTTCTAAGGACGG
AGGGAAGGACGGAGGGAAGGAGGGGGGGGGAGAACGGAAGTTGGGCGGCT
ATCGCTTGGTGAAATTTGCGTTGGTGCCCTTCGCTGAGGCATGGAGGAAG
GGAGAAGACGGGGGAAATCAGTGTACAGTGGGAGGGAAGGGGTAG
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Synonyms
Publications