NO16G02730.1, NO16G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G02730.1
Unique NameNO16G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1105
Alignment locationchr16:782895..784458 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:782895..784458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G02730.1 vs.
Match: EWM23839.1 (cdk-activating kinase assembly factor mat1 [Nannochloropsis gaditana])

HSP 1 Score: 487.3 bits (1253), Expect = 4.100e-134
Identity = 253/344 (73.55%), Postives = 301/344 (87.50%), Query Frame = 0 
Query:    9 EEEEDEMAVKCSACDQRQDALDNLSRKRFKINTACGHYFCDACIQREFARKTRGAFRCPACAKMGRDREVLRQSLETKTREQLLVEMDTKWRERVLEVYGKREEEFGGDEEAYNDYVEKREDLIYTLANRLFLDENEVKQAETRLENERKLNAAAVAKYKARREEDRRRSEKAVESYDRQWAEQVKLAQDRERKEQERKREFRLQVQQRNLGERDAVTIKLEEPLGRGEERRGKEEEEEEDDEEILRALDR-GGKGGGMEGGWGGMSGASVFHTSLRVLVGDQPKIVEVEGGRAGGRVGGREAVAKASGWPISLRYKRCWEEAVASLFEMSTEARGRLGRTFYR 352
            EEE+DEM VKC+AC+QR+DALDNLSRKRFKINT+CGHYFCD CIQREFARKTRG FRCPACA++G+DREVLRQSLETK+REQL+VE+DTKWRERVLEVYGK+EE+FGG+E+AYNDY+E+REDLIYTLANRLF+DENEV++AE RLE ERK N  AVA+Y+ARREEDRRRS +AVES++++WAEQV+ A ++E++E E+ REFRLQ+QQ+NLGERD VT++L   +GRG   R   EEEEED E++ RAL R GG+GGG+EGG  GMSGAS F T+LRVLVG  P+IV VEGGR  G  GG+E +AKASGWP+SLRYKRCWEEA+ASLF  S E RGRLGRTFYR
Sbjct:   14 EEEDDEMTVKCAACEQREDALDNLSRKRFKINTSCGHYFCDTCIQREFARKTRGGFRCPACARLGKDREVLRQSLETKSREQLMVELDTKWRERVLEVYGKKEEDFGGNEDAYNDYIEEREDLIYTLANRLFIDENEVREAEIRLEKERKTNEVAVARYRARREEDRRRSARAVESFEQEWAEQVRRAHEQEKRELEKLREFRLQIQQKNLGERDQVTVEL---VGRGGGGRADGEEEEED-EDVARALGREGGRGGGLEGGGAGMSGASAFCTNLRVLVGPPPRIVVVEGGRETGGEGGKEGIAKASGWPLSLRYKRCWEEAIASLFLGSGETRGRLGRTFYR 353
The following BLAST results are available for this feature:
BLAST of NO16G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23839.14.100e-13473.55cdk-activating kinase assembly factor mat1 [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02730NO16G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G02730.1NO16G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G02730.1.cds1NO16G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02730.1.cds2NO16G02730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02730.1.cds3NO16G02730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G02730.1.cds4NO16G02730.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G02730.1 ID=NO16G02730.1|Name=NO16G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
CATTTATTTCCCAGCACCTCCACCCCCAGGCAGGCGGAGCGAGCCAGTCA
TGGAGGAGGACCCTCAGCAAGAGGAGGAGGAGGAGGACGAGATGGCAGTC
AAGTGTTCGGCGTGTGACCAACGACAGGATGCTTTGGACAACCTGAGTCG
GAAACGCTTCAAGATCAACACGGCATGTGGGCACTATTTCTGTGACGCAT
GTATTCAACGCGAATTCGCGCGCAAGACCCGCGGGGCATTCCGTTGTCCA
GCTTGTGCAAAAATGGGGCGCGATAGGGAGGTGTTACGACAGAGCCTGGA
AACCAAGACGAGAGAGCAGCTCTTGGTGGAGATGGACACCAAATGGCGGG
AGAGAGTGCTGGAGGTGTACGGAAAGCGGGAGGAGGAGTTTGGAGGGGAC
GAAGAGGCGTACAACGACTATGTGGAGAAGCGGGAGGACCTGATCTACAC
CCTGGCCAACCGCCTCTTTCTGGACGAGAACGAAGTCAAGCAAGCCGAAA
CTCGCCTAGAGAACGAGCGGAAATTGAATGCCGCGGCCGTGGCGAAATAC
AAGGCTCGCCGTGAAGAGGACCGTCGTCGCTCCGAGAAAGCTGTGGAGAG
CTACGACCGCCAATGGGCCGAGCAAGTCAAGCTCGCGCAAGACAGGGAAC
GGAAGGAACAAGAGAGGAAGAGGGAGTTTAGACTACAGGTGCAACAGAGA
AATTTGGGGGAGCGAGATGCAGTGACGATTAAGCTGGAGGAGCCCCTAGG
ACGTGGAGAGGAGAGGAGAGGGAAGGAAGAAGAGGAAGAGGAAGACGATG
AGGAGATACTGCGGGCATTGGATCGCGGAGGGAAGGGAGGAGGGATGGAA
GGAGGATGGGGAGGGATGAGCGGGGCCAGCGTCTTTCATACTAGCCTGCG
AGTGTTGGTGGGAGATCAGCCCAAAATTGTGGAGGTGGAGGGCGGGAGGG
CGGGGGGAAGGGTGGGAGGGAGGGAGGCCGTGGCCAAGGCGAGTGGGTGG
CCCATATCGTTGAGGTATAAGCGGTGCTGGGAGGAGGCAGTGGCGTCCTT
GTTTGAGATGTCGACGGAGGCTAGAGGGCGGTTGGGAAGGACTTTTTATA
GGTAG
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protein sequence of NO16G02730.1

>NO16G02730.1-protein ID=NO16G02730.1-protein|Name=NO16G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MEEDPQQEEEEEDEMAVKCSACDQRQDALDNLSRKRFKINTACGHYFCDA
CIQREFARKTRGAFRCPACAKMGRDREVLRQSLETKTREQLLVEMDTKWR
ERVLEVYGKREEEFGGDEEAYNDYVEKREDLIYTLANRLFLDENEVKQAE
TRLENERKLNAAAVAKYKARREEDRRRSEKAVESYDRQWAEQVKLAQDRE
RKEQERKREFRLQVQQRNLGERDAVTIKLEEPLGRGEERRGKEEEEEEDD
EEILRALDRGGKGGGMEGGWGGMSGASVFHTSLRVLVGDQPKIVEVEGGR
AGGRVGGREAVAKASGWPISLRYKRCWEEAVASLFEMSTEARGRLGRTFY
R*
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mRNA from alignment at chr16:782895..784458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G02730.1 ID=NO16G02730.1|Name=NO16G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp|location=Sequence derived from alignment at chr16:782895..784458- (Nannochloropsis oceanica)
CATTTATTTCCCAGCACCTCCACCCCCAGGCAGGCGGAGCGAGCCAGTCA
TGGAGGAGGACCCTCAGCAAGAGGAGGAGGAGGAGGACGAGATGGCAGTC
AAGTGTTCGGCGTGTGACCAACGACAGGATGCTTTGGACAACCTGAGTCG
GAAACGCTTCAAGATCAACACGGCATGTGGGCACTATTTGTAAGTAGGGG
GTGAGGGTCGAGTGCGGGTGGAGGGAGCTGTGAGTAAGTCGAGCATGTGG
GTGTCCTCTCGGGATGAGGTGACCTTGGCCCACTTACCCCTCCTTCCCTC
CCTCCCTTCCTCCTTCATCTATATCCCAGCTGTGACGCATGTATTCAACG
CGAATTCGCGCGCAAGACCCGCGGGGCATTCCGTTGTCCAGCTTGTGCAA
AAATGGGGCGCGATAGGGAGGTGTTACGACAGAGCCTGGAAACCAAGACG
AGAGAGCAGCTCTTGGTGGAGATGGACACCAAATGGCGGGAGAGAGTGCT
GGAGGTGTACGGAAAGCGGGAGGAGGAGTTTGGAGGGGACGAAGAGGCGT
ACAACGACTATGTGGAGAAGCGGGAGGACCTGAGTAAGTGCTCCCCCTCC
CCCCCTTCGGCCTTTCCTCTCTCCATTCCTTACCTTCTCTCCTTCCCTCC
CTCTTCCCCTCCTTCCAGTCTACACCCTGGCCAACCGCCTCTTTCTGGAC
GAGAACGAAGTCAAGCAAGCCGAAACTCGCCTAGAGAACGAGCGGAAATT
GAATGCCGCGGCCGTGGCGAAATACAAGGCTCGCCGTGAAGGTACGTACG
TTCGTATGTATGTCTGTAGGTAGGTGACTTAATTCCCCACCCCCTTCCCC
TCTTTAGTATCTGTGACCGTCCTTTCGCAGTATTTTACGTCAAAGAGAGA
GTCAGTGCAGGCGCGAGAAGGCTGCTCGAGCTATTTCGCCAGACGCGATC
ACTCACATCCCGCCCTCCTTCCATTCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCTCCAACTCAGAGGACCGTCGTCGCTCCGAGAAAGC
TGTGGAGAGCTACGACCGCCAATGGGCCGAGCAAGTCAAGCTCGCGCAAG
ACAGGGAACGGAAGGAACAAGAGAGGAAGAGGGAGTTTAGACTACAGGTG
CAACAGAGAAATTTGGGGGAGCGAGATGCAGTGACGATTAAGCTGGAGGA
GCCCCTAGGACGTGGAGAGGAGAGGAGAGGGAAGGAAGAAGAGGAAGAGG
AAGACGATGAGGAGATACTGCGGGCATTGGATCGCGGAGGGAAGGGAGGA
GGGATGGAAGGAGGATGGGGAGGGATGAGCGGGGCCAGCGTCTTTCATAC
TAGCCTGCGAGTGTTGGTGGGAGATCAGCCCAAAATTGTGGAGGTGGAGG
GCGGGAGGGCGGGGGGAAGGGTGGGAGGGAGGGAGGCCGTGGCCAAGGCG
AGTGGGTGGCCCATATCGTTGAGGTATAAGCGGTGCTGGGAGGAGGCAGT
GGCGTCCTTGTTTGAGATGTCGACGGAGGCTAGAGGGCGGTTGGGAAGGA
CTTTTTATAGGTAG
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Coding sequence (CDS) from alignment at chr16:782895..784458-

>NO16G02730.1 ID=NO16G02730.1|Name=NO16G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr16:782895..784458- (Nannochloropsis oceanica)
ATGGAGGAGGACCCTCAGCAAGAGGAGGAGGAGGAGGACGAGATGGCAGT
CAAGTGTTCGGCGTGTGACCAACGACAGGATGCTTTGGACAACCTGAGTC
GGAAACGCTTCAAGATCAACACGGCATGTGGGCACTATTTCTGTGACGCA
TGTATTCAACGCGAATTCGCGCGCAAGACCCGCGGGGCATTCCGTTGTCC
AGCTTGTGCAAAAATGGGGCGCGATAGGGAGGTGTTACGACAGAGCCTGG
AAACCAAGACGAGAGAGCAGCTCTTGGTGGAGATGGACACCAAATGGCGG
GAGAGAGTGCTGGAGGTGTACGGAAAGCGGGAGGAGGAGTTTGGAGGGGA
CGAAGAGGCGTACAACGACTATGTGGAGAAGCGGGAGGACCTGATCTACA
CCCTGGCCAACCGCCTCTTTCTGGACGAGAACGAAGTCAAGCAAGCCGAA
ACTCGCCTAGAGAACGAGCGGAAATTGAATGCCGCGGCCGTGGCGAAATA
CAAGGCTCGCCGTGAAGAGGACCGTCGTCGCTCCGAGAAAGCTGTGGAGA
GCTACGACCGCCAATGGGCCGAGCAAGTCAAGCTCGCGCAAGACAGGGAA
CGGAAGGAACAAGAGAGGAAGAGGGAGTTTAGACTACAGGTGCAACAGAG
AAATTTGGGGGAGCGAGATGCAGTGACGATTAAGCTGGAGGAGCCCCTAG
GACGTGGAGAGGAGAGGAGAGGGAAGGAAGAAGAGGAAGAGGAAGACGAT
GAGGAGATACTGCGGGCATTGGATCGCGGAGGGAAGGGAGGAGGGATGGA
AGGAGGATGGGGAGGGATGAGCGGGGCCAGCGTCTTTCATACTAGCCTGC
GAGTGTTGGTGGGAGATCAGCCCAAAATTGTGGAGGTGGAGGGCGGGAGG
GCGGGGGGAAGGGTGGGAGGGAGGGAGGCCGTGGCCAAGGCGAGTGGGTG
GCCCATATCGTTGAGGTATAAGCGGTGCTGGGAGGAGGCAGTGGCGTCCT
TGTTTGAGATGTCGACGGAGGCTAGAGGGCGGTTGGGAAGGACTTTTTAT
AGGTAG
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Synonyms
Publications