NO16G01220.1, NO16G01220.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G01220.1
Unique Name	NO16G01220.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1959
Alignment location	chr16:377786..380491 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:377786..380491 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO16G01220.1 vs.
Match: EWM24033.1 (folate biopterin transporter [Nannochloropsis gaditana])

HSP 1 Score: 892.9 bits (2306), Expect = 6.000e-256
Identity = 461/591 (78.00%), Postives = 504/591 (85.28%), Query Frame = 0

Query:   58 MYRLTEHEINLETAELDSAAHLTTSIPRNGPDDRAEYDALAAAAVSTIGSGATLDSSSSSSSSSSSKDEEYGEITTLMKGETPGGKGRVRTPSSTMKAGGGLGVGKLEIEG------GRPGDGMDPAMRLRLTSMWSSQNLALLMSYWTIGFAMTFTGTPLTAYAVGKLNISPAQLNITGTMLALPWSFKVLYGLLSDCVPIRGKRRKPYFIIGWSIFVGMNLALASMGEPSLNALIGMGFFSVCGYMLADVMCDAIIVERSQLEVEGKVGTMQAVGYMARYIGNVVGATLGTILYNEAEWGWGLSISNIYLLNGLSALVLVGPVTWQLSDPNHVLAARSLREQLEDIWEMVQRKTIFVPMSFIAVYNMMQIPNGAWSNFLILGLKFTPWMLGIMFIIATVFSWLGITFYRAFLMPYSWRWVYIISTSLTVFFSVLQLCLIFRINVRWGIPDLVFALGDDAAGSFIQALQFLPAVTMYIGLCPAGAEGTSYAMLTTLSNVAGAIGSDMGTLMTGIWNVSNESLSAGEWSGLWKLSLLTSLLQPLGLCLLFLLPRDVAHQKAMQKCDKKNWWGGAGFVTFLVVAWSWTIIQT 643
            MYRLTE EINLETAELDSAAH   +I R         + L  +  +    G  L+SSSSSSS +   DEE GE+ TL+ G TP  +   RTP+S         +GK+EIEG        PGD MDP MR  L SM+S QN ALLMSYWTIGFAMTFTGTPLTAYAV KLN+ PAQLNI GTMLALPWSFKVLYGLLSDCVPI GKRRKPYF+IGWS FV MNL LAS+GEPSLNALIGMGFFSVCGYMLADVMCDAIIVERS+LE EG+VG MQ+VGY+ARY+GNVVGATLGTILYNE EW WGLSIS+IYLLNGL+A+VLV P T+ LSDPN VL ARSL+EQL DIW+MVQR+TI+VPMSFIAVYNM+ IPN AWSNFLILGLKFTPWMLGIMFI+ATVFSWLGITFYRAFLMPYSWRWVYIISTSLTVFFSVLQL LIFR+N RWGIPDL+FALGDDAA +FI ALQFLPAVTMYIGLCPAGAEGTSYAMLTTLSNVAGAIGSD+GTLMTGIW+VSN +L+AGEW+GLWKLSLLTSLLQPLGLCLLFLLPRDVAHQKAMQKCDK++WWGG GFVTFLVVAW+WTI+QT
Sbjct:    1 MYRLTEQEINLETAELDSAAHHPQAIGRIPDPGWTGGNGLQGSVHTPEDGGLLLESSSSSSSLAD--DEEQGEVRTLVAGNTP--RSEARTPASRKAPNWDQRIGKMEIEGVEAGETREPGDDMDPVMRASLISMYSLQNSALLMSYWTIGFAMTFTGTPLTAYAVNKLNVGPAQLNIAGTMLALPWSFKVLYGLLSDCVPIMGKRRKPYFVIGWSAFVAMNLGLASLGEPSLNALIGMGFFSVCGYMLADVMCDAIIVERSKLEPEGRVGHMQSVGYVARYVGNVVGATLGTILYNEKEWHWGLSISSIYLLNGLAAVVLVLPFTYHLSDPNQVLEARSLKEQLGDIWKMVQRRTIYVPMSFIAVYNMLLIPNAAWSNFLILGLKFTPWMLGIMFIVATVFSWLGITFYRAFLMPYSWRWVYIISTSLTVFFSVLQLSLIFRLNARWGIPDLIFALGDDAAANFITALQFLPAVTMYIGLCPAGAEGTSYAMLTTLSNVAGAIGSDLGTLMTGIWDVSNTALAAGEWTGLWKLSLLTSLLQPLGLCLLFLLPRDVAHQKAMQKCDKRDWWGGFGFVTFLVVAWTWTIVQT 587

The following BLAST results are available for this feature:

BLAST of NO16G01220.1 vs.

BLAST of NO16G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24033.1	6.000e-256	78.00	folate biopterin transporter [Nannochloropsis gadi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G01220	NO16G01220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G01220.1	NO16G01220.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G01220.1.cds1	NO16G01220.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G01220.1.cds2	NO16G01220.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G01220.1.cds3	NO16G01220.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G01220.1.cds4	NO16G01220.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G01220.1.cds5	NO16G01220.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO16G01220.1.cds6	NO16G01220.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:377786..380491-
coding sequence from alignment at chr16:377786..380491-

mRNA sequence

>NO16G01220.1 ID=NO16G01220.1|Name=NO16G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp
ATGAGGCGTGGAGCGCAACCGGCGGGGGTGGTGGAAGGAGGAGTCCTCCA
GCGTACATTCGTGGCTGTTCGGAACGAAAGGAGGGCCACCCTCCAACACC
ATGGAGCCTTCACACCGAGAAGAAGCAGCAGCAGCAGCAGCAGTAGTAGC
AGTAAGCCTTCATTCATTACCATGTATCGCCTGACCGAGCACGAGATTAA
CCTGGAGACCGCCGAGCTGGACTCTGCCGCCCACCTCACCACATCCATTC
CCCGCAATGGTCCAGATGATCGCGCCGAATACGATGCCTTGGCTGCGGCG
GCCGTCTCTACCATTGGCAGCGGGGCGACACTCGATTCCTCCTCTTCTTC
TTCCTCCTCCTCCTCGAGCAAAGACGAAGAGTACGGAGAGATTACGACCT
TGATGAAGGGAGAAACCCCAGGAGGGAAGGGTAGGGTTCGCACCCCTTCC
TCGACGATGAAAGCAGGAGGAGGACTTGGGGTGGGGAAGTTGGAGATTGA
GGGAGGGAGGCCAGGTGATGGCATGGATCCGGCGATGAGGTTGCGCTTGA
CAAGCATGTGGAGTTCGCAGAACCTGGCGTTGTTGATGAGTTATTGGACG
ATTGGTTTCGCAATGACCTTTACGGGCACGCCTCTTACGGCCTACGCCGT
CGGAAAGTTGAACATCAGCCCGGCCCAGCTTAATATAACTGGAACGATGC
TAGCGTTGCCTTGGTCATTCAAAGTACTCTATGGACTCTTGTCAGACTGT
GTCCCCATTCGCGGGAAACGCCGCAAGCCGTATTTTATCATCGGCTGGTC
TATTTTCGTGGGCATGAATCTCGCTCTGGCCTCCATGGGCGAGCCAAGTC
TTAATGCCTTGATCGGCATGGGCTTCTTCTCCGTGTGTGGATACATGCTC
GCAGACGTCATGTGTGACGCGATCATAGTCGAGCGGTCTCAGCTAGAAGT
GGAGGGGAAAGTAGGGACTATGCAGGCAGTGGGCTATATGGCGAGGTACA
TCGGGAATGTCGTGGGTGCCACGCTGGGCACCATTTTGTACAACGAGGCC
GAGTGGGGGTGGGGGTTAAGCATCAGCAACATTTACTTGCTCAACGGGTT
GAGCGCGCTTGTATTGGTGGGCCCGGTTACCTGGCAGCTGTCAGATCCGA
ACCATGTGTTGGCCGCCAGGAGCCTGAGAGAGCAGCTGGAGGATATATGG
GAGATGGTGCAGAGGAAGACGATTTTTGTGCCCATGTCATTTATTGCGGT
GTACAATATGATGCAAATTCCGAACGGTGCATGGAGCAACTTCCTCATTT
TGGGGTTGAAGTTTACGCCCTGGATGCTGGGTATCATGTTTATTATCGCA
ACAGTCTTCTCGTGGTTAGGTATCACTTTCTACCGTGCCTTCCTCATGCC
CTACTCCTGGCGCTGGGTCTACATCATCTCCACCTCCCTCACTGTCTTCT
TCTCTGTCCTTCAGCTCTGCCTCATCTTCCGCATCAATGTCAGGTGGGGG
ATCCCCGACCTGGTGTTTGCCTTGGGAGATGACGCGGCCGGCAGCTTTAT
TCAAGCCTTACAGTTCCTGCCTGCCGTGACCATGTACATCGGTTTGTGCC
CCGCCGGCGCAGAGGGGACGAGCTACGCGATGCTTACTACCCTTTCGAAT
GTGGCAGGTGCGATTGGCTCGGACATGGGCACCTTGATGACGGGCATATG
GAATGTGTCGAATGAAAGCCTGTCGGCGGGGGAATGGTCGGGCCTGTGGA
AACTCAGTTTGTTGACGAGTTTATTGCAGCCCCTGGGATTGTGCCTGTTG
TTTTTGTTGCCCAGGGACGTGGCGCACCAGAAGGCGATGCAAAAATGCGA
TAAGAAGAACTGGTGGGGGGGGGCGGGATTTGTGACATTTTTGGTGGTTG
CATGGAGCTGGACGATCATCCAGACTTTTGTTTATTTGGCCACGGGGAGC
AGCGTCTGA

protein sequence of NO16G01220.1

>NO16G01220.1-protein ID=NO16G01220.1-protein|Name=NO16G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=653bp
MRRGAQPAGVVEGGVLQRTFVAVRNERRATLQHHGAFTPRRSSSSSSSSS
SKPSFITMYRLTEHEINLETAELDSAAHLTTSIPRNGPDDRAEYDALAAA
AVSTIGSGATLDSSSSSSSSSSSKDEEYGEITTLMKGETPGGKGRVRTPS
STMKAGGGLGVGKLEIEGGRPGDGMDPAMRLRLTSMWSSQNLALLMSYWT
IGFAMTFTGTPLTAYAVGKLNISPAQLNITGTMLALPWSFKVLYGLLSDC
VPIRGKRRKPYFIIGWSIFVGMNLALASMGEPSLNALIGMGFFSVCGYML
ADVMCDAIIVERSQLEVEGKVGTMQAVGYMARYIGNVVGATLGTILYNEA
EWGWGLSISNIYLLNGLSALVLVGPVTWQLSDPNHVLAARSLREQLEDIW
EMVQRKTIFVPMSFIAVYNMMQIPNGAWSNFLILGLKFTPWMLGIMFIIA
TVFSWLGITFYRAFLMPYSWRWVYIISTSLTVFFSVLQLCLIFRINVRWG
IPDLVFALGDDAAGSFIQALQFLPAVTMYIGLCPAGAEGTSYAMLTTLSN
VAGAIGSDMGTLMTGIWNVSNESLSAGEWSGLWKLSLLTSLLQPLGLCLL
FLLPRDVAHQKAMQKCDKKNWWGGAGFVTFLVVAWSWTIIQTFVYLATGS
SV*

mRNA from alignment at chr16:377786..380491-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G01220.1 ID=NO16G01220.1|Name=NO16G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2706bp|location=Sequence derived from alignment at chr16:377786..380491- (Nannochloropsis oceanica)
ATGAGGCGTGGAGCGCAACCGGCGGGGGTGGTGGAAGGAGGAGTCCTCCA
GCGTACATTCGTGGCTGTTCGGAACGAAAGGAGGGCCACCCTCCAACACC
ATGGAGCCTTGTAAATGCTTACTGCCAGCACAAGGAACGACTGCAGATCC
TGGTGTGGTGTGTATGTGTGTGTGGTGGTCTACATGAGCTAGCTTTTTAT
TCGCTTTTAGGCGAAAATGCCCGATTCTAAGACGTTTATGCTAGAAGGCC
CAACAGCACGCCTGAAATTTGATGCAATATCTTCCATATATCGCATTGGA
TTACTCCTACGCACATCCATACCCTCCATCAACCATCCGCCCATCCCCAC
ACAGCACACCGAGAAGAAGCAGCAGCAGCAGCAGCAGTAGTAGCAGTAAG
CCTTCATTCATTACCATGTATCGCCTGACCGAGCACGAGATTAACCTGGA
GACCGCCGAGCTGGACTCTGCCGCCCACCTCACCACATCCATTCCCCGCA
ATGGTCCAGATGATCGCGCCGAATACGATGCCTTGGCTGCGGCGGCCGTC
TCTACCATTGGCAGCGGGGCGACACTCGATTCCTCCTCTTCTTCTTCCTC
CTCCTCCTCGAGCAAAGACGAAGAGTACGGAGAGATTACGACCTTGATGA
AGGGAGAAACCCCAGGAGGGAAGGGTAGGGTTCGCACCCCTTCCTCGACG
ATGAAAGCAGGAGGAGGACTTGGGGTGGGGAAGTTGGAGATTGAGGGAGG
GAGGCCAGGTGATGGCATGGATCCGGCGATGAGGTTGCGCTTGACAAGCA
TGTGGAGTTCGCAGAACCTGGCGTTGTTGATGAGTTATTGGACGATTGGG
TATGAGTGGATGGGAGAAGGCGAGGGAGGAAGGGAACAAGGAGGGGCAGA
AAGAGGGATCAATCGTGTTCGTGCCACCCGCACTCATTCTCTTTCTTCCT
CCAACCTCTAGTTTCGCAATGACCTTTACGGGCACGCCTCTTACGGCCTA
CGCCGTCGGAAAGTTGAACATCAGCCCGGCCCAGCTTAATATAACTGGAA
CGATGCTAGCGTTGCCTTGGTCATTCAAAGTACTCTATGGACTCTTGTCA
GACTGTGTCCCCATTCGCGGGAAACGCCGCAAGCCGTATTTTATCATCGG
CTGGTCTATTTTCGTGGGTGAGTGAGGGACAGGGAAGAAAGGCAAAGAAG
ATAGGGGGGAAATGTGGCACATTACGACTCAGATTGCGGCCACTCATATT
ATATTCCTCCCTCCCTTTCTTCCATCACTCCTTCTCTCCCTCCCTTCAGG
CATGAATCTCGCTCTGGCCTCCATGGGCGAGCCAAGTCTTAATGCCTTGA
TCGGCATGGGCTTCTTCTCCGTGTGTGGATACATGCTCGCAGACGTCATG
TGTGACGCGATCATAGTCGAGCGGTCTCAGCTAGAAGTGGAGGGGAAAGT
AGGGACTATGCAGGCAGTGGGCTATATGGCGAGGTACATCGGGAATGTCG
TGGGTGCCACGCTGGGCACCATTTTGTACAACGAGGCCGAGTGGGGGTGG
GGGTTAAGCATCAGCAACATTTACTTGCTCAACGGGTTGAGCGCGCTTGT
ATTGGTGGGCCCGGTTACCTGGCAGCTGTCAGATCCGAACCATGTGTTGG
CCGCCAGGAGCCTGAGAGAGCAGCTGGAGGATATATGGGAGATGGTGCAG
AGGAAGACGATTTTTGTGCCCATGTCATTTATTGCGGTATGTACCCTATT
TCCCTCCCTCCCTCATTCCCTTCTATCCTTCCCTCTTTCGTTCTTGCCCC
TGACACGGCCCACCTTCTTAATGCCCCTTCGTCCTTTCCTCCTTCTCTCC
CTCCCTTTCTTCCCATAGGTGTACAATATGATGCAAATTCCGAACGGTGC
ATGGAGCAACTTCCTCATTTTGGGGTTGAAGTTTACGCCCTGGATGCTGG
GTATCATGTTTATTATCGCAACAGTCTTCTCGTGGTTAGGTGATATGGGA
GGGAAGGGAGAGAGGGAGGAGAAGAGGAGACCTTTGGTGGCGCCAGACGA
AGATTGCTTTTCTGTATCCTGATGTTTCTTTCTTGCGTTTTTCACATGTT
TTCTTTTCCCTCCCAGGTATCACTTTCTACCGTGCCTTCCTCATGCCCTA
CTCCTGGCGCTGGGTCTACATCATCTCCACCTCCCTCACTGTCTTCTTCT
CTGTCCTTCAGCTCTGCCTCATCTTCCGCATCAATGTCAGGTGGGGGATC
CCCGACCTGGTGTTTGCCTTGGGAGATGACGCGGCCGGCAGCTTTATTCA
AGCCTTACAGTTCCTGCCTGCCGTGACCATGTACATCGGTTTGTGCCCCG
CCGGCGCAGAGGGGACGAGCTACGCGATGCTTACTACCCTTTCGAATGTG
GCAGGTGCGATTGGCTCGGACATGGGCACCTTGATGACGGGCATATGGAA
TGTGTCGAATGAAAGCCTGTCGGCGGGGGAATGGTCGGGCCTGTGGAAAC
TCAGTTTGTTGACGAGTTTATTGCAGCCCCTGGGATTGTGCCTGTTGTTT
TTGTTGCCCAGGGACGTGGCGCACCAGAAGGCGATGCAAAAATGCGATAA
GAAGAACTGGTGGGGGGGGGCGGGATTTGTGACATTTTTGGTGGTTGCAT
GGAGCTGGACGATCATCCAGACTTTTGTTTATTTGGCCACGGGGAGCAGC
GTCTGA

Coding sequence (CDS) from alignment at chr16:377786..380491-

>NO16G01220.1 ID=NO16G01220.1|Name=NO16G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=1959bp|location=Sequence derived from alignment at chr16:377786..380491- (Nannochloropsis oceanica)
ATGAGGCGTGGAGCGCAACCGGCGGGGGTGGTGGAAGGAGGAGTCCTCCA
GCGTACATTCGTGGCTGTTCGGAACGAAAGGAGGGCCACCCTCCAACACC
ATGGAGCCTTCACACCGAGAAGAAGCAGCAGCAGCAGCAGCAGTAGTAGC
AGTAAGCCTTCATTCATTACCATGTATCGCCTGACCGAGCACGAGATTAA
CCTGGAGACCGCCGAGCTGGACTCTGCCGCCCACCTCACCACATCCATTC
CCCGCAATGGTCCAGATGATCGCGCCGAATACGATGCCTTGGCTGCGGCG
GCCGTCTCTACCATTGGCAGCGGGGCGACACTCGATTCCTCCTCTTCTTC
TTCCTCCTCCTCCTCGAGCAAAGACGAAGAGTACGGAGAGATTACGACCT
TGATGAAGGGAGAAACCCCAGGAGGGAAGGGTAGGGTTCGCACCCCTTCC
TCGACGATGAAAGCAGGAGGAGGACTTGGGGTGGGGAAGTTGGAGATTGA
GGGAGGGAGGCCAGGTGATGGCATGGATCCGGCGATGAGGTTGCGCTTGA
CAAGCATGTGGAGTTCGCAGAACCTGGCGTTGTTGATGAGTTATTGGACG
ATTGGTTTCGCAATGACCTTTACGGGCACGCCTCTTACGGCCTACGCCGT
CGGAAAGTTGAACATCAGCCCGGCCCAGCTTAATATAACTGGAACGATGC
TAGCGTTGCCTTGGTCATTCAAAGTACTCTATGGACTCTTGTCAGACTGT
GTCCCCATTCGCGGGAAACGCCGCAAGCCGTATTTTATCATCGGCTGGTC
TATTTTCGTGGGCATGAATCTCGCTCTGGCCTCCATGGGCGAGCCAAGTC
TTAATGCCTTGATCGGCATGGGCTTCTTCTCCGTGTGTGGATACATGCTC
GCAGACGTCATGTGTGACGCGATCATAGTCGAGCGGTCTCAGCTAGAAGT
GGAGGGGAAAGTAGGGACTATGCAGGCAGTGGGCTATATGGCGAGGTACA
TCGGGAATGTCGTGGGTGCCACGCTGGGCACCATTTTGTACAACGAGGCC
GAGTGGGGGTGGGGGTTAAGCATCAGCAACATTTACTTGCTCAACGGGTT
GAGCGCGCTTGTATTGGTGGGCCCGGTTACCTGGCAGCTGTCAGATCCGA
ACCATGTGTTGGCCGCCAGGAGCCTGAGAGAGCAGCTGGAGGATATATGG
GAGATGGTGCAGAGGAAGACGATTTTTGTGCCCATGTCATTTATTGCGGT
GTACAATATGATGCAAATTCCGAACGGTGCATGGAGCAACTTCCTCATTT
TGGGGTTGAAGTTTACGCCCTGGATGCTGGGTATCATGTTTATTATCGCA
ACAGTCTTCTCGTGGTTAGGTATCACTTTCTACCGTGCCTTCCTCATGCC
CTACTCCTGGCGCTGGGTCTACATCATCTCCACCTCCCTCACTGTCTTCT
TCTCTGTCCTTCAGCTCTGCCTCATCTTCCGCATCAATGTCAGGTGGGGG
ATCCCCGACCTGGTGTTTGCCTTGGGAGATGACGCGGCCGGCAGCTTTAT
TCAAGCCTTACAGTTCCTGCCTGCCGTGACCATGTACATCGGTTTGTGCC
CCGCCGGCGCAGAGGGGACGAGCTACGCGATGCTTACTACCCTTTCGAAT
GTGGCAGGTGCGATTGGCTCGGACATGGGCACCTTGATGACGGGCATATG
GAATGTGTCGAATGAAAGCCTGTCGGCGGGGGAATGGTCGGGCCTGTGGA
AACTCAGTTTGTTGACGAGTTTATTGCAGCCCCTGGGATTGTGCCTGTTG
TTTTTGTTGCCCAGGGACGTGGCGCACCAGAAGGCGATGCAAAAATGCGA
TAAGAAGAACTGGTGGGGGGGGGCGGGATTTGTGACATTTTTGGTGGTTG
CATGGAGCTGGACGATCATCCAGACTTTTGTTTATTTGGCCACGGGGAGC
AGCGTCTGA

Synonyms

Publications