NO16G00790.1, NO16G00790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00790.1
Unique NameNO16G00790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2081
Alignment locationchr16:259194..261628 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:259194..261628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00790.1 vs.
Match: EWM24042.1 (membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase [Nannochloropsis gaditana])

HSP 1 Score: 583.9 bits (1504), Expect = 5.400e-163
Identity = 336/504 (66.67%), Postives = 375/504 (74.40%), Query Frame = 0 
Query:   48 TMMMDLDDDEGPLKMDDGEDSGGSPGGSDDYVLPRPPSPGGLQRTFTPVDHYDT-CSPLPPLAPSLSSHHGGGSGGDGLLGSNGHGNGGGGYHLPHPAASPFPSTKSNHHSYSSSMAPPPAPMRGSGSRELKRGYAMHGVLGGGSGGYFPDDSPSDVMAFPPPTPYKGSHPTSHAPPSVGKHSTPSSLLGHHHHHHSQYQQHQHPSSSSRRSSKSKSSSSSS----------SSSSNNNTH------STVSRFQADFDVVRVIGSGSFGEVYEARSRVDGVEYAVKCTRKRFKGQADRERYLQEVKALAKVCAADSSEEVLHVVRYHQAWIEDHRLFMQTELCEESLEQAIREGEPGGRMGLEEVFDFGRQMLLALDVLHRHGLVHLDVKPANIFLKAGLFKLGDFGLVASVNSSDGWGDCLQEGDSRYMSAELLQDGPKDLTKCDIFSLGATVYEICRGRPLPPNGEEWHSLRSGSLPALEFGGRVEAGVMKDLMKVLTQMMA 535
            +MMMDLDDD+GPLKM+DG  SGGSPGGSDDY+LPRPPSPGGLQRTFTPVD Y+T CSPLPPL PS SS              NG  N    +HL  P ASPF    S H  YS+ M PP A +R + +R+L+RGYAM   LG     YF D+SPSDVMAFPPPTPYK +HP  +AP S  +  TPSSL  H H  HS    H HP+ SS+R+ +  +  S+           SS    + H      + VSRFQ DFDVVRVIGSG FGEVY  RSRVDGVEYAVKCTR+RF+G ADR RYLQEVKALAKVCAADSSEEVLHVVRYHQAWIED RLFMQTELCEESL+ A+R GE   +MG EEVFDF RQMLLALDVLHRHGLVHLDVKP NIF+KAG++KLGDFGLVASVNSSDG GD L EGDSRYMSAELLQDGPKDLTKCDIFSLGATVYE+ RGR LPPNGEEWH+LRSG  P+L+      A ++ DLM+VL QMMA
Sbjct:    3 SMMMDLDDDDGPLKMEDGGGSGGSPGGSDDYILPRPPSPGGLQRTFTPVDDYETTCSPLPPLPPSSSSTSSDYK-------RNGRANCD--FHLSRPIASPFSGHNSQHQPYSAPMGPPQAHLRENINRDLQRGYAMQDELGKN---YFLDESPSDVMAFPPPTPYKPAHP-GYAPASATR--TPSSLHRHPHEPHS----HHHPTHSSKRNGRGSNPCSTDKHRGSGAGPGSSGRRTSLHQGHGPTTPVSRFQTDFDVVRVIGSGCFGEVYRVRSRVDGVEYAVKCTRRRFRGPADRNRYLQEVKALAKVCAADSSEEVLHVVRYHQAWIEDERLFMQTELCEESLDGALRAGE---KMGFEEVFDFMRQMLLALDVLHRHGLVHLDVKPGNIFIKAGVYKLGDFGLVASVNSSDGLGDSLVEGDSRYMSAELLQDGPKDLTKCDIFSLGATVYEMGRGRALPPNGEEWHALRSGHPPSLK---GEPAVLVSDLMRVLAQMMA 481
The following BLAST results are available for this feature:
BLAST of NO16G00790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24042.15.400e-16366.67membrane-associated tyrosine- and threonine-specif... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00790NO16G00790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00790.1NO16G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00790.1.cds1NO16G00790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00790.1.cds2NO16G00790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00790.1.cds3NO16G00790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00790.1 ID=NO16G00790.1|Name=NO16G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2081bp
CAAATCAAGAACCGATCTGTGCTGGTGTCGGGTGGTCGGATAAAAATTAG
GGTGGGGGTGTAGGGCGAGGTCTTGGTGCATTATTGCTTCGCCTTGTTGA
AGAGGACAGGACGGGAAGAAGCATGACGATGATGCATGATGCCGGCAGCC
GTCGTTCACACGAGTTTTGGGGGGAAAACCTGGATTCGAAATACTTGGGG
CACTCGCTCGCGCCTAAAGAGCATACAGCTCACCCATATTCACCCTCGAC
AGTCCAAAGTGTAACCATGAATCGTGCCATCGGTGGTGAAACAAATGAGC
CTTTGCATTATCTCGGTTTTGCGTCAAATCCCTGCCGTGGCAGGAGTTCA
AAAGCACCCTCCTCCTTCTCACCCCCTGTCCATTGTACGACACAGCAACA
ACAGACCCACACACAACCATCGCACCGCGTGCGGCACCATGATGATGGAC
TTGGACGACGACGAAGGTCCCCTTAAAATGGACGACGGGGAAGACAGCGG
GGGCAGCCCTGGAGGCAGCGACGACTACGTGTTGCCTCGACCCCCCTCCC
CTGGCGGCCTCCAACGCACCTTTACGCCTGTCGACCACTACGACACCTGT
TCACCCTTGCCCCCCTTGGCCCCTTCGTTATCCTCGCACCATGGTGGCGG
CAGCGGTGGAGATGGGTTGCTCGGCAGCAACGGCCACGGGAATGGAGGAG
GCGGGTATCACCTTCCCCACCCTGCCGCCTCTCCTTTCCCCAGCACCAAG
TCCAACCACCACTCCTATTCCTCCTCCATGGCCCCCCCACCTGCCCCGAT
GCGTGGAAGCGGCAGCCGGGAGTTGAAGCGGGGGTATGCCATGCATGGTG
TCCTTGGTGGAGGAAGTGGTGGGTATTTTCCCGATGATAGTCCTTCGGAT
GTCATGGCCTTTCCACCTCCTACTCCTTATAAGGGATCTCACCCTACCAG
CCATGCCCCGCCTTCGGTAGGGAAGCATTCTACCCCTTCCTCCCTCCTTG
GTCATCACCACCACCACCATAGCCAATACCAGCAGCACCAGCACCCGTCC
TCCTCCTCAAGACGCAGCAGCAAAAGCAAAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAACAACAATACCCACAGCACCGTCTCTCGGTTCCAAGCTG
ACTTTGACGTTGTCCGTGTTATCGGCTCTGGAAGCTTTGGTGAGGTTTAT
GAGGCTCGATCAAGAGTGGATGGAGTTGAGTATGCAGTTAAGTGTACCCG
TAAGAGGTTCAAAGGCCAGGCAGATCGCGAACGGTATCTACAGGAGGTGA
AGGCACTGGCGAAGGTCTGCGCAGCGGACAGTAGCGAGGAGGTGCTGCAC
GTGGTGAGGTACCACCAGGCGTGGATCGAAGACCATCGGTTGTTCATGCA
GACGGAGTTGTGCGAGGAGAGCTTAGAGCAGGCCATACGGGAGGGGGAGC
CCGGGGGAAGGATGGGACTGGAAGAGGTGTTTGACTTCGGGCGGCAGATG
CTCTTGGCGCTGGACGTATTGCATCGGCATGGCTTGGTGCATCTGGACGT
GAAGCCCGCCAACATCTTCCTCAAAGCCGGCCTGTTCAAACTCGGGGATT
TCGGACTGGTGGCGTCTGTGAACAGCAGCGACGGGTGGGGGGACTGCCTT
CAAGAGGGCGATTCGCGGTACATGTCCGCGGAACTACTGCAGGACGGTCC
GAAAGACTTGACCAAGTGCGACATTTTCTCGCTTGGCGCAACGGTGTATG
AGATCTGTCGGGGGAGGCCCTTGCCACCGAATGGGGAGGAATGGCACTCC
CTGCGAAGTGGGTCGTTGCCGGCGTTGGAATTTGGAGGACGGGTGGAGGC
GGGTGTTATGAAGGATTTGATGAAAGTGCTGACGCAGATGATGGCGCCCG
ATCCTTCTCAACGTCCCTCTGCCGCCGTCCTCCTGACACACCCACGCTTC
CGCTCTCGACTCGAACGTGAATTGCTCAAGGAAAAAATGAAGAGCAAGAG
TTTGGCCAAGGCCCTGGTACAGAACCAGCAGCAGCAGAGTAAGGGCCGGA
AGCTTGAAAGAACGCAAACTTATTAGAGAAT
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protein sequence of NO16G00790.1

>NO16G00790.1-protein ID=NO16G00790.1-protein|Name=NO16G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MSLCIISVLRQIPAVAGVQKHPPPSHPLSIVRHSNNRPTHNHRTACGTMM
MDLDDDEGPLKMDDGEDSGGSPGGSDDYVLPRPPSPGGLQRTFTPVDHYD
TCSPLPPLAPSLSSHHGGGSGGDGLLGSNGHGNGGGGYHLPHPAASPFPS
TKSNHHSYSSSMAPPPAPMRGSGSRELKRGYAMHGVLGGGSGGYFPDDSP
SDVMAFPPPTPYKGSHPTSHAPPSVGKHSTPSSLLGHHHHHHSQYQQHQH
PSSSSRRSSKSKSSSSSSSSSSNNNTHSTVSRFQADFDVVRVIGSGSFGE
VYEARSRVDGVEYAVKCTRKRFKGQADRERYLQEVKALAKVCAADSSEEV
LHVVRYHQAWIEDHRLFMQTELCEESLEQAIREGEPGGRMGLEEVFDFGR
QMLLALDVLHRHGLVHLDVKPANIFLKAGLFKLGDFGLVASVNSSDGWGD
CLQEGDSRYMSAELLQDGPKDLTKCDIFSLGATVYEICRGRPLPPNGEEW
HSLRSGSLPALEFGGRVEAGVMKDLMKVLTQMMAPDPSQRPSAAVLLTHP
RFRSRLERELLKEKMKSKSLAKALVQNQQQQSKGRKLERTQTY*
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mRNA from alignment at chr16:259194..261628+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00790.1 ID=NO16G00790.1|Name=NO16G00790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2435bp|location=Sequence derived from alignment at chr16:259194..261628+ (Nannochloropsis oceanica)
CAAATCAAGAACCGATCTGTGCTGGTGTCGGGTGGTCGGATAAAAATTAG
GGTGGGGGTGTAGGGCGAGGTCTTGGTGCATTATTGCTTCGCCTTGTTGA
AGAGGACAGGACGGGAAGAAGCATGACGATGATGCATGATGCCGGCAGCC
GTCGTTCACACGAGTTTTGGGGGGAAAACCTGGATTCGAAATACTTGGGG
CACTCGCTCGCGCCTAAAGAGCATACAGCTCACCCATATTCACCCTCGAC
AGTCCAAAGTGTAACCATGAATCGTGCCATCGGTGGTGAAACAAATGAGC
CTTTGCATTATCTCGGTTTTGCGTCAAATCCCTGCCGTGGCAGGAGTTCA
AAAGCACCCTCCTCCTTCTCACCCCCTGTCCATTGTACGACACAGCAACA
ACAGACCCACACACAACCATCGCACCGCGTGCGGCACCATGATGATGGAC
TTGGACGACGACGAAGGTCCCCTTAAAATGGACGACGGGGAAGACAGCGG
GGGCAGCCCTGGAGGCAGCGACGACTACGTGTTGCCTCGACCCCCCTCCC
CTGGCGGCCTCCAACGCACCTTTACGCCTGTCGACCACTACGACACCTGT
TCACCCTTGCCCCCCTTGGCCCCTTCGTTATCCTCGCACCATGGTGGCGG
CAGCGGTGGAGATGGGTTGCTCGGCAGCAACGGCCACGGGAATGGAGGAG
GCGGGTATCACCTTCCCCACCCTGCCGCCTCTCCTTTCCCCAGCACCAAG
TCCAACCACCACTCCTATTCCTCCTCCATGGCCCCCCCACCTGCCCCGAT
GCGTGGAAGCGGCAGCCGGGAGTTGAAGCGGGGGTATGCCATGCATGGTG
TCCTTGGTGGAGGAAGTGGTGGGTATTTTCCCGATGATAGTCCTTCGGAT
GTCATGGCCTTTCCACCTCCTACTCCTTATAAGGGATCTCACCCTACCAG
CCATGCCCCGCCTTCGGTAGGGAAGCATTCTACCCCTTCCTCCCTCCTTG
GTCATCACCACCACCACCATAGCCAATACCAGCAGCACCAGCACCCGTCC
TCCTCCTCAAGACGCAGCAGCAAAAGCAAAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAACAACAATACCCACAGCACCGTCTCTCGGTTCCAAGCTG
ACTTTGACGTTGTCCGTGTTATCGGCTCTGGAAGCTTTGGTGAGGTTTAT
GAGGCTCGATCAAGAGTGGATGGAGTTGAGTATGCAGTTAAGTGTACCCG
TAAGAGGTTCAAAGGCCAGGCAGATCGCGAACGGTATCTACAGGAGGTGA
AGGCACTGGCGAAGGTCTGCGCAGCGGACAGTAGCGAGGAGGTGCTGCAC
GTGGTGAGGTACCACCAGGCGTGGATCGAAGACCATCGGTTGTTCATGCA
GACGGAGTTGTGCGAGGAGAGCTTAGAGCAGGCCATACGGGAGGGGGAGC
CCGGGGGAAGGATGGGACTGGAAGAGGTGTTTGACTTCGGGCGGCAGATG
CTCTTGGCGCTGGACGTATTGCATCGGCATGGCTTGGTGCATCTGGACGT
GAAGGTGAGATGGGAAGAAAGCAGTACGGGGGGAAGGGCGGGAGGGCGGG
CGGGCGGGAGGAACGCTCCTCATATGCTCAACAACATATCGACTTTCCTT
CCCTCCCTCCTTCCTTCTCTTCCCCTTTTACAGCCCGCCAACATCTTCCT
CAAAGCCGGCCTGTTCAAACTCGGGGATTTCGGACTGGTGGCGTCTGTGA
ACAGCAGCGACGGGTGGGGGGACTGCCTTCAAGAGGGCGATTCGCGGTAC
ATGTCCGCGGAACTACTGCAGGACGGTCCGAAAGACTTGACCAAGTGCGA
CATTTTCTCGCTTGGCGCAACGGTGTATGAGATCTGTCGGGGGAGGCCCT
TGCCACCGAATGGGGAGGAATGGCACTCCCTGCGAAGTGGGTCGTTGCCG
GCGTTGGAATTTGGAGGACGGGTGGAGGCGGGTGTTATGAAGGATTTGAT
GAAAGTGCTGACGCAGATGATGGCGGTGAGTAGCAGGGAGGGAGAGAAGG
AGGAAGGAGAGGAGGGAAGGAGTGGTTGACGAGGTGATAATTGGTGCTAC
AGTATTGTGGTGTGTCGTCGAAGGGAGGGAGGGAGGGAGGGATAGATGGA
TGGATTGATGGATTTCGATCGCGCAAACTTACACAAAATCTTTCCCCCCC
TCTCGCTTCTCCCATCCCTTCCTTTCTCCACTCCTTCCTGGTCACTACAG
CCCGATCCTTCTCAACGTCCCTCTGCCGCCGTCCTCCTGACACACCCACG
CTTCCGCTCTCGACTCGAACGTGAATTGCTCAAGGAAAAAATGAAGAGCA
AGAGTTTGGCCAAGGCCCTGGTACAGAACCAGCAGCAGCAGAGTAAGGGC
CGGAAGCTTGAAAGAACGCAAACTTATTAGAGAAT
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Coding sequence (CDS) from alignment at chr16:259194..261628+

>NO16G00790.1 ID=NO16G00790.1|Name=NO16G00790.1|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at chr16:259194..261628+ (Nannochloropsis oceanica)
ATGAGCCTTTGCATTATCTCGGTTTTGCGTCAAATCCCTGCCGTGGCAGG
AGTTCAAAAGCACCCTCCTCCTTCTCACCCCCTGTCCATTGTACGACACA
GCAACAACAGACCCACACACAACCATCGCACCGCGTGCGGCACCATGATG
ATGGACTTGGACGACGACGAAGGTCCCCTTAAAATGGACGACGGGGAAGA
CAGCGGGGGCAGCCCTGGAGGCAGCGACGACTACGTGTTGCCTCGACCCC
CCTCCCCTGGCGGCCTCCAACGCACCTTTACGCCTGTCGACCACTACGAC
ACCTGTTCACCCTTGCCCCCCTTGGCCCCTTCGTTATCCTCGCACCATGG
TGGCGGCAGCGGTGGAGATGGGTTGCTCGGCAGCAACGGCCACGGGAATG
GAGGAGGCGGGTATCACCTTCCCCACCCTGCCGCCTCTCCTTTCCCCAGC
ACCAAGTCCAACCACCACTCCTATTCCTCCTCCATGGCCCCCCCACCTGC
CCCGATGCGTGGAAGCGGCAGCCGGGAGTTGAAGCGGGGGTATGCCATGC
ATGGTGTCCTTGGTGGAGGAAGTGGTGGGTATTTTCCCGATGATAGTCCT
TCGGATGTCATGGCCTTTCCACCTCCTACTCCTTATAAGGGATCTCACCC
TACCAGCCATGCCCCGCCTTCGGTAGGGAAGCATTCTACCCCTTCCTCCC
TCCTTGGTCATCACCACCACCACCATAGCCAATACCAGCAGCACCAGCAC
CCGTCCTCCTCCTCAAGACGCAGCAGCAAAAGCAAAAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAACAATACCCACAGCACCGTCTCTCGGTTCC
AAGCTGACTTTGACGTTGTCCGTGTTATCGGCTCTGGAAGCTTTGGTGAG
GTTTATGAGGCTCGATCAAGAGTGGATGGAGTTGAGTATGCAGTTAAGTG
TACCCGTAAGAGGTTCAAAGGCCAGGCAGATCGCGAACGGTATCTACAGG
AGGTGAAGGCACTGGCGAAGGTCTGCGCAGCGGACAGTAGCGAGGAGGTG
CTGCACGTGGTGAGGTACCACCAGGCGTGGATCGAAGACCATCGGTTGTT
CATGCAGACGGAGTTGTGCGAGGAGAGCTTAGAGCAGGCCATACGGGAGG
GGGAGCCCGGGGGAAGGATGGGACTGGAAGAGGTGTTTGACTTCGGGCGG
CAGATGCTCTTGGCGCTGGACGTATTGCATCGGCATGGCTTGGTGCATCT
GGACGTGAAGCCCGCCAACATCTTCCTCAAAGCCGGCCTGTTCAAACTCG
GGGATTTCGGACTGGTGGCGTCTGTGAACAGCAGCGACGGGTGGGGGGAC
TGCCTTCAAGAGGGCGATTCGCGGTACATGTCCGCGGAACTACTGCAGGA
CGGTCCGAAAGACTTGACCAAGTGCGACATTTTCTCGCTTGGCGCAACGG
TGTATGAGATCTGTCGGGGGAGGCCCTTGCCACCGAATGGGGAGGAATGG
CACTCCCTGCGAAGTGGGTCGTTGCCGGCGTTGGAATTTGGAGGACGGGT
GGAGGCGGGTGTTATGAAGGATTTGATGAAAGTGCTGACGCAGATGATGG
CGCCCGATCCTTCTCAACGTCCCTCTGCCGCCGTCCTCCTGACACACCCA
CGCTTCCGCTCTCGACTCGAACGTGAATTGCTCAAGGAAAAAATGAAGAG
CAAGAGTTTGGCCAAGGCCCTGGTACAGAACCAGCAGCAGCAGAGTAAGG
GCCGGAAGCTTGAAAGAACGCAAACTTATTAG
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Synonyms
Publications