NO15G03040.1, NO15G03040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03040.1
Unique NameNO15G03040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2723
Alignment locationchr15:839106..842302 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:839106..842302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03040.1 vs.
Match: XP_005854967.1 (alpha beta domain protein, partial [Nannochloropsis gaditana CCMP526]; EKU21394.1 alpha beta domain protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 164.9 bits (416), Expect = 5.900e-37
Identity = 103/213 (48.36%), Postives = 133/213 (62.44%), Query Frame = 0 
Query:    1 MEDDEWQQQLWHQQEHAQALPPLQRVELKPRPGRPKGEPARAVSLLEIPRQRQFQKPQGEGQNKEQRSHEAKREEGMEEEFEEGGDVEEGEEEVVTVFLIHGAMATWRQFMRLLPSLSRYFRVVCFDAYGCGESPKPAGVDGSAFSTDELFEDLKEVYDRFKGKGGNILVGHSFGSSQVMRLAECVQQREGGPGQSQHQHQHQHHHQPHQPSQ 214
            MED+   Q+LW +    + LPP+Q V L+PR G       RAVSLLEIP +   ++ +   +  +Q     +  E M  +  +G    EG E+ VT+FLIHGAMATWRQF R+LPSL R+ RVVC+DAYGCG+ PKP  V  SA+ST+  FEDL EVY RFKG+  N+LVGHSFGSSQ MRLA  V++   G      + + Q  + P  PSQ
Sbjct:   13 MEDETCPQRLWGRPHEEETLPPVQLVTLRPRSGCSGAVSPRAVSLLEIPCRPHHRRHRNAQRPHQQPLSPPRGNEDMAGDETQGDTAGEGTEDAVTIFLIHGAMATWRQFSRILPSLRRHCRVVCYDAYGCGDGPKPENVPPSAYSTEAHFEDLLEVYQRFKGR-RNVLVGHSFGSSQAMRLAAVVERELQG-----QKREAQDGNTPTPPSQ 219
The following BLAST results are available for this feature:
BLAST of NO15G03040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854967.15.900e-3748.36alpha beta domain protein, partial [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03040NO15G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03040.1NO15G03040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03040.1.cds1NO15G03040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03040.1.cds2NO15G03040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03040.1.cds3NO15G03040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03040.1.cds4NO15G03040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03040.1 ID=NO15G03040.1|Name=NO15G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2723bp
AGCCATGGAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAAC
ATGCACAAGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCG
GGCAGGCCAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACC
GCGGCAACGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGC
AGCGTAGCCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAG
GAGGGAGGCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTT
AATTCACGGAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCT
CCCTCTCTCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGT
GAGAGCCCCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGA
ATTGTTCGAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGG
GCAATATCCTGGTTGGACATTCTTTCGGTTCCTCCCAGGTGATGAGACTG
GCTGAGTGCGTACAACAGAGAGAGGGAGGGCCTGGGCAGAGTCAGCACCA
GCACCAGCACCAGCATCATCACCAGCCGCACCAGCCGTCTCAGTATGAGC
ATCACGCCGGAGCGCTAGTACGAGGAGCGATGCATCCTCCTTTTTCCTTC
CCATCCTCCTCCTCCTCTATTCTAGGCCTGGTCCTCCTCGCTTCTGCGTA
TCATGTCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCC
TCAACCTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATC
GACGCCCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCA
AGGTAACCCGATGTACATCGTCAAGGCATTCTATCGCCATCTCCGCTGGG
CCACCATTGAGACGATCCACTCTCTTGCTTGTCCCTGTGAAGTGGTGCAC
GGCGAAACGGACGGCATCATCCCCCTCTACCAGGGGAGGGCGCTTGCCGC
CAATTTACTCAAAGCCAACTTTCACGTCTTCAGGGAAACCGGCCACCAAG
TGATGCAAGAGCGACCGGCAGAGACTGCAGCCTTGATCATAGCAGCTGCC
ACAAAGTGGTCGAGGGCGAGGAGGAGGGCGGGAGGGAAGGAGGGGAGGTG
GAAGAGAACGATGTTAACGGGGAAGATGGTGGAGGAGGTGGAGATTTCCT
TCCCTCAGCGCATTGCCAAGGAGGAAGAGGAGGACGAGCAGGAGGAGGAG
GAGCACGCGGAGGAAAGGGTTGAGAGAAGTGAAGGCGATAAGGTGACGTA
GAAAAAACGGAAGGCGAAAAGAGAGAGCGAGAAAGTGCGGAGGGGGGAAA
GGAGGAAGGCCAACGACTTTCACGATCGCCTCGAATATCGCTTCGACACA
GGGGTGCGAAAGACAAATTTTGAATGTTTAAAAATCAAACTATGTACAAA
TGCGCCAACAAAGCCCCACTCAGGCACAAAAGTTGAGATAAAAAGAAAGA
TCAGAAGCTTCTAGACCGGGAAACACTGTTGTATGATGTATGTATCAAAA
CATTTTAATCGGGTACTTAACGTTGAGAGCGTCGCTTTTTCACCCTTGAG
CTATCTACTCTCCTCCTCCACCTTCCCTTTTTCCCCTACTCTCTTCTCCA
ACTCGTATAAGAACTGCGTCACCATCGTCCCCTCTCTATGCATATATCCC
ATCCTCTCCTCCCCTATCTTTGTCACCACAAACCACCCCTCCTCCTCCTC
CTCCCCTCGTCCTCCATACCTCTGCCTCTGGGTCGCCAAGGTAAAGAACC
TTAAGTCCCTCTCTTCACACCCAGGCACATGATGCGCAAAACATACCAAT
GCGATCCCTCCTGGACGTAGCGTTTGAAAGAGGGAGCAAAGGAGATTCGA
GTGTTGATCGTGAAGCCAGAGACACTCGCCTACTAGGGCAACGTCATACG
CAACAGGAACAGCAGTAACAGCAGCAGCTTCTTCGCCCTCCGTACTTTCG
CCCTCTCTGTCTGCTTTGTCTGCTTCATCTTGATTTCTTTTTCTCCTCTT
TCCTTCTCCTTTATCCACATGCGATCGATCACCACCAGCCCTCATCAATC
TTCCACAGTCACTCCCCCACAAATGACTTTGCACCCCCACCCTGCTCTCC
CCTTCACCTCCCCCCTCTTCCCGTCCCAGCCCCAACCACGGCTCGTTCCT
CACATCCTTCAAACTCGTACGAATGGCGTCCAGCAGTCTTTGATCTGGGT
AGTCTGTAATCATGGCAAACTCACACTCGTGCACCAACGCGATCAAAGAG
GGCAAGGCACCAGCCGCGCCGAACTCAATGACACGCTTTCCCTGGACCAG
AGTAGGGTTAGAGTCCAGATACCGAGCCAGCATGACACTGCCATTCCAAA
CAGAATAGGCAAAAAGGCTACCGTTGGGGCCCGAGTCCTTGGCCAGGGTG
ACGTGCAAGCGCAGGGAAGGAGAGACCTCAATGAGATGGCTTTCTTGGTC
TTGCTGAGAGGTGGAGGCCAAGACGAGAAGCGACGCACGTTCCCGCATAG
ACTCCGCAAACAGCAAGGATAAGGCAGCATCGTCATTTCCTTTGTCAGTG
GCATAGTCTAAAGGCTGTAGTGGAGGCGGTAGTGGAGTTGATCGCGTGTC
TTCGGCCATGTACGCCTGTGTCT
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protein sequence of NO15G03040.1

>NO15G03040.1-protein ID=NO15G03040.1-protein|Name=NO15G03040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MEDDEWQQQLWHQQEHAQALPPLQRVELKPRPGRPKGEPARAVSLLEIPR
QRQFQKPQGEGQNKEQRSHEAKREEGMEEEFEEGGDVEEGEEEVVTVFLI
HGAMATWRQFMRLLPSLSRYFRVVCFDAYGCGESPKPAGVDGSAFSTDEL
FEDLKEVYDRFKGKGGNILVGHSFGSSQVMRLAECVQQREGGPGQSQHQH
QHQHHHQPHQPSQYEHHAGALVRGAMHPPFSFPSSSSSILGLVLLASAYH
VPDGGNPIFTLPLPVLNLIKPIISQVFKSKAIDAHAPSSVWKEQARGNQG
NPMYIVKAFYRHLRWATIETIHSLACPCEVVHGETDGIIPLYQGRALAAN
LLKANFHVFRETGHQVMQERPAETAALIIAAATKWSRARRRAGGKEGRWK
RTMLTGKMVEEVEISFPQRIAKEEEEDEQEEEEHAEERVERSEGDKVT*
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mRNA from alignment at chr15:839106..842302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03040.1 ID=NO15G03040.1|Name=NO15G03040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3197bp|location=Sequence derived from alignment at chr15:839106..842302+ (Nannochloropsis oceanica)
AGCCATGGAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAAC
ATGCACAAGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCG
GGCAGGCCAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACC
GCGGCAACGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGC
AGCGTAGCCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAG
GAGGGAGGCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTT
AATTCACGGAGGTACGCTTGCTCATTGCCTTCCTGTCGACTCACTCGTTG
CATTATTTTTCACAATCTTCCTTCTCTACTCTTTCCGTCCCTCCCCCCTC
GACACACCCCAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCC
TCCCTCTCTCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGG
TGAGAGCCCCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATG
AATTGTTCGAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGG
GGCAATATCCTGGTTGGACATTCTTTCGGTTCCTCCCAGGTGATGAGACT
GGCTGAGTGCGTACAACAGAGAGAGGGAGGGCCTGGGCAGAGTCAGCACC
AGCACCAGCACCAGCATCATCACCAGCCGCACCAGCCGTCTCAGTATGAG
CATCACGCCGGAGCGCTAGTACGAGGAGCGATGCATCCTCCTTTTTCCTT
CCCATCCTCCTCCTCCTCTATTCTAGGCCTGGTCCTCCTCGCTTCTGCGT
ATCATGTCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTC
CTCAACCTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTAT
CGACGCCCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACC
AAGGTATCTAAGCAGTGGATGTGGGACAATAAATGATAATAACGTTATAA
TGGTTACCAAAAACGATGATAATAACAACATGTACAGAATGATGATTGGG
AGCTTGTTAAAACAATGTAGTAATCAATAACCGATATTGAAATAAATCTG
AAAGCGCTGACCAGACACACGCCACCCGACCTTCACACGCCCTCTCTCCC
TCCCTCCCTCTTTCCAGGTAACCCGATGTACATCGTCAAGGCATTCTATC
GCCATCTCCGCTGGGCCACCATTGAGACGATCCACTCTCTTGCTTGTCCC
TGTGAAGTGGTGCACGGCGAAACGGACGGCATCATCCCCCTCTACCAGGG
GAGGGCGCTTGCCGCCAATTTACTCAAAGCCAACTTTCACGTCTTCAGGT
CGGGAGTTGCTTTCATCCCATCCCTCCCTCCCTCCTCTCGTGTCCTTTTT
CTGCGGCAGCACTCGGTGGCATCGTCCCTTGTGTAATTGTTATGGTCGAA
GAAAGTCATTCACCTTTGACCCCCCCCCCTCCCCCCCTCCCTTCCTCCTC
TTTTCAGGGAAACCGGCCACCAAGTGATGCAAGAGCGACCGGCAGAGACT
GCAGCCTTGATCATAGCAGCTGCCACAAAGTGGTCGAGGGCGAGGAGGAG
GGCGGGAGGGAAGGAGGGGAGGTGGAAGAGAACGATGTTAACGGGGAAGA
TGGTGGAGGAGGTGGAGATTTCCTTCCCTCAGCGCATTGCCAAGGAGGAA
GAGGAGGACGAGCAGGAGGAGGAGGAGCACGCGGAGGAAAGGGTTGAGAG
AAGTGAAGGCGATAAGGTGACGTAGAAAAAACGGAAGGCGAAAAGAGAGA
GCGAGAAAGTGCGGAGGGGGGAAAGGAGGAAGGCCAACGACTTTCACGAT
CGCCTCGAATATCGCTTCGACACAGGGGTGCGAAAGACAAATTTTGAATG
TTTAAAAATCAAACTATGTACAAATGCGCCAACAAAGCCCCACTCAGGCA
CAAAAGTTGAGATAAAAAGAAAGATCAGAAGCTTCTAGACCGGGAAACAC
TGTTGTATGATGTATGTATCAAAACATTTTAATCGGGTACTTAACGTTGA
GAGCGTCGCTTTTTCACCCTTGAGCTATCTACTCTCCTCCTCCACCTTCC
CTTTTTCCCCTACTCTCTTCTCCAACTCGTATAAGAACTGCGTCACCATC
GTCCCCTCTCTATGCATATATCCCATCCTCTCCTCCCCTATCTTTGTCAC
CACAAACCACCCCTCCTCCTCCTCCTCCCCTCGTCCTCCATACCTCTGCC
TCTGGGTCGCCAAGGTAAAGAACCTTAAGTCCCTCTCTTCACACCCAGGC
ACATGATGCGCAAAACATACCAATGCGATCCCTCCTGGACGTAGCGTTTG
AAAGAGGGAGCAAAGGAGATTCGAGTGTTGATCGTGAAGCCAGAGACACT
CGCCTACTAGGGCAACGTCATACGCAACAGGAACAGCAGTAACAGCAGCA
GCTTCTTCGCCCTCCGTACTTTCGCCCTCTCTGTCTGCTTTGTCTGCTTC
ATCTTGATTTCTTTTTCTCCTCTTTCCTTCTCCTTTATCCACATGCGATC
GATCACCACCAGCCCTCATCAATCTTCCACAGTCACTCCCCCACAAATGA
CTTTGCACCCCCACCCTGCTCTCCCCTTCACCTCCCCCCTCTTCCCGTCC
CAGCCCCAACCACGGCTCGTTCCTCACATCCTTCAAACTCGTACGAATGG
CGTCCAGCAGTCTTTGATCTGGGTAGTCTGTAATCATGGCAAACTCACAC
TCGTGCACCAACGCGATCAAAGAGGGCAAGGCACCAGCCGCGCCGAACTC
AATGACACGCTTTCCCTGGACCAGAGTAGGGTTAGAGTCCAGATACCGAG
CCAGCATGACACTGCCATTCCAAACAGAATAGGCAAAAAGGCTACCGTTG
GGGCCCGAGTCCTTGGCCAGGGTGACGTGCAAGCGCAGGGAAGGAGAGAC
CTCAATGAGATGGCTTTCTTGGTCTTGCTGAGAGGTGGAGGCCAAGACGA
GAAGCGACGCACGTTCCCGCATAGACTCCGCAAACAGCAAGGATAAGGCA
GCATCGTCATTTCCTTTGTCAGTGGCATAGTCTAAAGGCTGTAGTGGAGG
CGGTAGTGGAGTTGATCGCGTGTCTTCGGCCATGTACGCCTGTGTCT
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Coding sequence (CDS) from alignment at chr15:839106..842302+

>NO15G03040.1 ID=NO15G03040.1|Name=NO15G03040.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr15:839106..842302+ (Nannochloropsis oceanica)
ATGGAAGACGACGAATGGCAGCAGCAGCTCTGGCACCAGCAGGAACATGC
ACAAGCGCTACCCCCTCTCCAAAGAGTCGAGCTCAAACCGCGCCCGGGCA
GGCCAAAAGGGGAGCCCGCCCGGGCCGTAAGCCTGCTCGAGATACCGCGG
CAACGGCAGTTCCAAAAACCGCAAGGGGAGGGACAGAATAAAGAGCAGCG
TAGCCATGAGGCCAAGAGAGAGGAGGGCATGGAGGAGGAGTTCGAGGAGG
GAGGCGACGTAGAGGAAGGAGAAGAGGAAGTCGTGACGGTCTTTTTAATT
CACGGAGCCATGGCCACCTGGCGGCAATTCATGCGCCTCCTCCCCTCCCT
CTCTCGGTACTTCCGCGTCGTCTGCTTCGATGCCTACGGGTGTGGTGAGA
GCCCCAAGCCCGCTGGTGTGGATGGAAGTGCTTTTTCCACCGATGAATTG
TTCGAGGATTTGAAAGAGGTCTACGATAGGTTCAAAGGCAAAGGGGGCAA
TATCCTGGTTGGACATTCTTTCGGTTCCTCCCAGGTGATGAGACTGGCTG
AGTGCGTACAACAGAGAGAGGGAGGGCCTGGGCAGAGTCAGCACCAGCAC
CAGCACCAGCATCATCACCAGCCGCACCAGCCGTCTCAGTATGAGCATCA
CGCCGGAGCGCTAGTACGAGGAGCGATGCATCCTCCTTTTTCCTTCCCAT
CCTCCTCCTCCTCTATTCTAGGCCTGGTCCTCCTCGCTTCTGCGTATCAT
GTCCCTGATGGAGGGAATCCCATTTTTACCCTCCCTTTGCCTGTCCTCAA
CCTGATCAAGCCCATCATTTCCCAAGTCTTCAAGAGCAAGGCTATCGACG
CCCACGCTCCCTCAAGCGTATGGAAGGAGCAGGCGCGTGGGAACCAAGGT
AACCCGATGTACATCGTCAAGGCATTCTATCGCCATCTCCGCTGGGCCAC
CATTGAGACGATCCACTCTCTTGCTTGTCCCTGTGAAGTGGTGCACGGCG
AAACGGACGGCATCATCCCCCTCTACCAGGGGAGGGCGCTTGCCGCCAAT
TTACTCAAAGCCAACTTTCACGTCTTCAGGGAAACCGGCCACCAAGTGAT
GCAAGAGCGACCGGCAGAGACTGCAGCCTTGATCATAGCAGCTGCCACAA
AGTGGTCGAGGGCGAGGAGGAGGGCGGGAGGGAAGGAGGGGAGGTGGAAG
AGAACGATGTTAACGGGGAAGATGGTGGAGGAGGTGGAGATTTCCTTCCC
TCAGCGCATTGCCAAGGAGGAAGAGGAGGACGAGCAGGAGGAGGAGGAGC
ACGCGGAGGAAAGGGTTGAGAGAAGTGAAGGCGATAAGGTGACGTAG
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Synonyms
Publications