NO15G03030.1, NO15G03030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03030.1
Unique NameNO15G03030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1330
Alignment locationchr15:837049..838954 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:837049..838954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03030.1 vs.
Match: EWM22295.1 (hypothetical protein Naga_100933g3 [Nannochloropsis gaditana])

HSP 1 Score: 303.1 bits (775), Expect = 6.600e-79
Identity = 158/210 (75.24%), Postives = 176/210 (83.81%), Query Frame = 0 
Query:    1 MRVVSLGLALACAAPAVAFLPPTVPAGRDVSMRAGQGQERRDFVKSTLGFASALGVVATLSPSLPANAGFLNKDKLPEVIKPVDAEIDQDILKSSDVQDELKAIRKYQAGVSSIKADFTGNPQADLYDRVRKELDVSSLRDSLNKVNTVFSEDTQRGTDRIVRIILQDVNELEVAARQRPGTTRSDTKLKLINKKLKKLDDAFSELLTYF 211
            MRV+     L CA PA AF+PPTV   R ++M A  GQ+RRD VKST GFAS LGV+A+LSPS PA AG+LN DKLPEVIKP DAE+DQDILKSS+VQ+ELKAIR Y+ GVSS++++  GN Q DLY RVRK+LDVSSLRDSLNKVNTVFSEDTQRGTDRIVRIILQDVNELE A RQRPGT RSDTKLKLI KKLKKLD AF+ELLTYF
Sbjct:    1 MRVLPYVFTLVCAVPAFAFMPPTVSHPRGITMSAEMGQDRRDVVKSTFGFASVLGVLASLSPSFPAQAGYLNSDKLPEVIKPSDAEVDQDILKSSEVQNELKAIRNYKEGVSSLRSELAGNAQVDLYSRVRKDLDVSSLRDSLNKVNTVFSEDTQRGTDRIVRIILQDVNELEAATRQRPGTQRSDTKLKLITKKLKKLDAAFAELLTYF 210
The following BLAST results are available for this feature:
BLAST of NO15G03030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22295.16.600e-7975.24hypothetical protein Naga_100933g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03030NO15G03030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03030.1NO15G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03030.1.cds1NO15G03030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03030.1.cds2NO15G03030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03030.1.cds3NO15G03030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03030.1.cds4NO15G03030.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03030.1 ID=NO15G03030.1|Name=NO15G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
TGATTGGTTGCCCTAGCTGCGGACCGTCCGACCGATTGTCTCTTTGCCTT
CCATGAGACATTCAAGCTATTTACCGACATTTCCAATAGCAAATGCCGTA
AGCAACGCACTCGCCAACACCTGTTGGGAAAAGAAGGGGAAGGATCGGTG
TCTTGGAACGCGGGGTCGGCCGTGAGTCTGCAAGCAGACCTGCTTATCTC
CAGCGAAGCAGCCTCCACGTTGGCTTGTTGCCCTTGCTGTCTTCTCACCG
TTCTCTCTCCCCATGGCCATCCCACTCCATAGACCCTTCTCCACCAAATA
TGCGTGTCGTCTCCTTGGGTTTGGCATTGGCCTGCGCGGCCCCTGCCGTC
GCTTTCCTGCCCCCCACCGTCCCTGCTGGCCGAGATGTATCTATGCGTGC
TGGCCAGGGCCAAGAACGCCGGGACTTCGTCAAGAGCACTCTGGGCTTCG
CCAGCGCTCTGGGCGTGGTTGCCACCCTCTCCCCCTCCCTCCCCGCTAAC
GCTGGCTTCTTGAACAAGGACAAACTGCCCGAGGTCATCAAACCCGTCGA
TGCCGAGATTGACCAAGACATTCTCAAGTCTTCCGATGTCCAAGACGAAT
TGAAGGCCATCCGAAAATACCAGGCGGGCGTCTCGAGCATCAAGGCCGAC
TTCACGGGGAATCCCCAGGCGGATTTGTACGACCGCGTGCGCAAGGAGTT
GGACGTGTCGTCCCTGCGTGACAGCCTGAACAAGGTCAACACTGTCTTCT
CCGAGGACACCCAGCGAGGGACGGACCGCATCGTGCGCATTATCTTGCAG
GATGTGAACGAGTTAGAAGTGGCGGCTCGCCAGCGCCCGGGCACCACTCG
GTCGGATACCAAGCTGAAGTTAATCAACAAGAAGCTCAAGAAGCTCGACG
ATGCTTTCTCGGAGCTTTTGACTTACTTCTAGAGTGAGGAGAAACAAGGG
ATATCATGTGACCAAGTGACCAAGGCGCTTTTTAACTTCCATCTGTCTTT
GAAACCTATCATAGAGGTTAGGAATGTGACCAGAAAGAGGGAGGGAAGGG
GTGGGGGCATGTGGGGTAGCCTCACATCAACAGCCTTCGGTGAGAAAGAC
ACACACAATTACAGAAATGGGAAGGAGGGAAGAGCTCCTGGGAAGAGAGG
GAAAGAAAGCGAGTGGCTTTTTGAATGTGTGTTTCTCATGTGTGTGTGTC
TTGAGGTTTGTGTGTGTGTGTGATCGTGTATTGATCTCGTAGTTACGAAA
CACAATAGCAAGCCGAAAACTTTGATAGGAATAAGGAAAAGCAGCCGAAC
CGTAATCAGTCAATCGATAACACCTCCCTG
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protein sequence of NO15G03030.1

>NO15G03030.1-protein ID=NO15G03030.1-protein|Name=NO15G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRVVSLGLALACAAPAVAFLPPTVPAGRDVSMRAGQGQERRDFVKSTLGF
ASALGVVATLSPSLPANAGFLNKDKLPEVIKPVDAEIDQDILKSSDVQDE
LKAIRKYQAGVSSIKADFTGNPQADLYDRVRKELDVSSLRDSLNKVNTVF
SEDTQRGTDRIVRIILQDVNELEVAARQRPGTTRSDTKLKLINKKLKKLD
DAFSELLTYF*
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mRNA from alignment at chr15:837049..838954-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03030.1 ID=NO15G03030.1|Name=NO15G03030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp|location=Sequence derived from alignment at chr15:837049..838954- (Nannochloropsis oceanica)
TGATTGGTTGCCCTAGCTGCGGACCGTCCGACCGATTGTCTCTTTGCCTT
CCATGAGACATTCAAGCTATTTACCGACATTTCCAATAGCAAATGCCGTA
AGCAACGCACTCGCCAACACCTGTTGGGAAAAGAAGGGGAAGGATCGGTG
TCTTGGAACGCGGGGTCGGCCGTGAGTCTGCAAGCAGACCTGCTTATCTC
CAGCGAAGCAGCCTCCACGTTGGCTTGTTGCCCTTGCTGTCTTCTCACCG
TTCTCTCTCCCCATGGCCATCCCACTCCATAGACCCTTCTCCACCAAATA
TGCGTGTCGTCTCCTTGGGTTTGGCATTGGCCTGCGCGGCCCCTGCCGTC
GCTTTCCTGCCCCCCACCGTCCCTGCTGGCCGAGGTAAGCAGCGAATTAG
AAGATCATCTATCAGCGGAGAGCGACCATGTCCAAGCCCGCCCACACGGT
CACTGTGTGCGTGATTGTGCGGCTCTCCTATACCATCCACCTGCCTCACC
CATCTATCTACGTAAATAATAGATGTATCTATGCGTGCTGGCCAGGGCCA
AGAACGCCGGGACTTCGTCAAGAGCACTCTGGGTAAGTCAACATGCTTTT
CATCGTCCATCATCGGTAACTACGACCTTGCCCTTCCTTGGTCGTTTCAT
TCCTGCCGTGTGTGGCCTTGAAAGGGCACATAGACACCGCTTATTTGCAG
TGCCTTGTCTGTCACCTCTCTTTACCCTAAGCCCGCCGTCTCAACATTCC
GTGTACCTTCTAAATCCTCCCCTCCTCTCCTTGCACAGGCTTCGCCAGCG
CTCTGGGCGTGGTTGCCACCCTCTCCCCCTCCCTCCCCGCTAACGCTGGC
TTCTTGAACAAGGACAAACTGCCCGAGGTCATCAAACCCGTCGATGCCGA
GATTGACCAAGACATTCTCAAGTCTTCCGATGTCCAAGACGAATTGAAGG
CCATCCGAAAATACCAGGCGGGCGTCTCGAGCATCAAGGCCGACTTCACG
GGGAATCCCCAGGCGGATTTGTACGACCGCGTGCGCAAGGTACGTCTTGA
GGGTCTACGGTCTATCACAAAATATTTTAATTGGGAAGCACGGCATCCGC
TTCTGCTTCTGCCGCTTGTGTGAGGCAGGCTACTTTGAGAGAGTGGGAAT
TACGAGGGCCTTTAGGATTCTCCAAGACAGTATGAAATGCGACGGATGTC
CATATATCACCATTATCATTTATGGTCCCAATCCACGTACTGCCTCTCAC
CACCTCTATCTGGAAAAATAGGAGTTGGACGTGTCGTCCCTGCGTGACAG
CCTGAACAAGGTCAACACTGTCTTCTCCGAGGACACCCAGCGAGGGACGG
ACCGCATCGTGCGCATTATCTTGCAGGATGTGAACGAGTTAGAAGTGGCG
GCTCGCCAGCGCCCGGGCACCACTCGGTCGGATACCAAGCTGAAGTTAAT
CAACAAGAAGCTCAAGAAGCTCGACGATGCTTTCTCGGAGCTTTTGACTT
ACTTCTAGAGTGAGGAGAAACAAGGGATATCATGTGACCAAGTGACCAAG
GCGCTTTTTAACTTCCATCTGTCTTTGAAACCTATCATAGAGGTTAGGAA
TGTGACCAGAAAGAGGGAGGGAAGGGGTGGGGGCATGTGGGGTAGCCTCA
CATCAACAGCCTTCGGTGAGAAAGACACACACAATTACAGAAATGGGAAG
GAGGGAAGAGCTCCTGGGAAGAGAGGGAAAGAAAGCGAGTGGCTTTTTGA
ATGTGTGTTTCTCATGTGTGTGTGTCTTGAGGTTTGTGTGTGTGTGTGAT
CGTGTATTGATCTCGTAGTTACGAAACACAATAGCAAGCCGAAAACTTTG
ATAGGAATAAGGAAAAGCAGCCGAACCGTAATCAGTCAATCGATAACACC
TCCCTG
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Coding sequence (CDS) from alignment at chr15:837049..838954-

>NO15G03030.1 ID=NO15G03030.1|Name=NO15G03030.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr15:837049..838954- (Nannochloropsis oceanica)
ATGCGTGTCGTCTCCTTGGGTTTGGCATTGGCCTGCGCGGCCCCTGCCGT
CGCTTTCCTGCCCCCCACCGTCCCTGCTGGCCGAGATGTATCTATGCGTG
CTGGCCAGGGCCAAGAACGCCGGGACTTCGTCAAGAGCACTCTGGGCTTC
GCCAGCGCTCTGGGCGTGGTTGCCACCCTCTCCCCCTCCCTCCCCGCTAA
CGCTGGCTTCTTGAACAAGGACAAACTGCCCGAGGTCATCAAACCCGTCG
ATGCCGAGATTGACCAAGACATTCTCAAGTCTTCCGATGTCCAAGACGAA
TTGAAGGCCATCCGAAAATACCAGGCGGGCGTCTCGAGCATCAAGGCCGA
CTTCACGGGGAATCCCCAGGCGGATTTGTACGACCGCGTGCGCAAGGAGT
TGGACGTGTCGTCCCTGCGTGACAGCCTGAACAAGGTCAACACTGTCTTC
TCCGAGGACACCCAGCGAGGGACGGACCGCATCGTGCGCATTATCTTGCA
GGATGTGAACGAGTTAGAAGTGGCGGCTCGCCAGCGCCCGGGCACCACTC
GGTCGGATACCAAGCTGAAGTTAATCAACAAGAAGCTCAAGAAGCTCGAC
GATGCTTTCTCGGAGCTTTTGACTTACTTCTAG
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Synonyms
Publications