|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr15 | genome | chr15:710730..713760 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G02580.1 vs.
Match: EWM22339.1 (hypothetical protein Naga_100277g6 [Nannochloropsis gaditana]) HSP 1 Score: 337.4 bits (864), Expect = 1.200e-88 Identity = 253/521 (48.56%), Postives = 309/521 (59.31%), Query Frame = 0
Query: 6 YRQHGHHDEEEEDGMILSTAQLDCRLLPGELIVAFVKREHVLQASWIILKVALYAEEEEKNQ-DEEEEDEESAIVRRRQEDGPDNHYQHLHHQHRRRQHQEPAAMRALILDGDGATLVMSQHHYSLIQRAGLSHLITLAPHPWRAFEFCLGHTVADVPGVVNHLAKLMADENISILHHSTYGAEIFLVQSRELKKALKCVREKVDATLHVVLAARAVRAASSVSGAASAAGGTGTDSEGGSPPLPESPQKKEKQVEKRGGRKKGGKEGEGDEYDQKIYESGVSSDWEGKG--GTSTSTPAAPSTLIASWAQKLRIRNPLHPLLSAPSSSSSSSLRSPVSASSTPSSSSATGVPLSSFFSSLPATAGQTLSATVAAAPAAAAAAAAAK------GTSTSASIPP------------PVNCNSNNTNPP-FSSSPFSTSLGPRCPPLVLRVMSQPLVLARLNKNYLQECSHLLARLLLFDRRPVHRFGSSSSHSRRFRKERKERKMKMKREGGRGGGRDSIDG 505
+ +G +E + DG+ILSTAQLDCRLLPGELI+A + R+HVLQASWIILKVAL++EEEE+ + +EEEE+EE R E N +++R R Q+ A MRALILDGDGATLVMSQ Y + +GL+HL+ LAP PWRA EFCLGHTVA+VPGVVNHLAKLMADENISILHHSTY AEIFLVQ+ EL A++C+RE+VDA LH VLAA A R S +G TDSEGGSP SP K+E GG+E GD D+K++E GVS D EG+G G T P++L++SW QKLR+ P L PSSS S L +P ++ + ++SSA SF S PA A P G +AS PP P + ++PP S+SPFST +GP PPL LRVM Q LVLARLN+ L E S LLARLLLFDR + RFG+ GG GGG I+G
Sbjct: 13 FYHYGGGEEGDNDGIILSTAQLDCRLLPGELIIAHIARQHVLQASWIILKVALFSEEEEEEEAEEEEEEEEGGETRGGLERAGGNEL----NEYRIRTRQQQAPMRALILDGDGATLVMSQAQYKRVVASGLAHLLHLAPSPWRALEFCLGHTVAEVPGVVNHLAKLMADENISILHHSTYSAEIFLVQAPELASAVRCIRERVDAALHGVLAAHAERIGSVRAG---------TDSEGGSPSYLGSPVKRE-----------GGEEDGGD-VDRKMHEIGVSRDGEGEGRKGREGGTAGKPASLLSSWVQKLRV-GPSRVL--PPSSSPPSRLATPATSGMSRAASSAP----PSFGPSSPAPGPSLAGLLPADIPHNRGGKEGGSDNDRGAGGRLAASEPPRPFPSHQQPSWAPGRPLAKPSSPPSLSTSPFSTFVGPTSPPLTLRVMPQSLVLARLNQEALPERSDLLARLLLFDRLAIRRFGAG---------------------GGGGGGEGGIEG 480
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G02580.1 ID=NO15G02580.1|Name=NO15G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp ATGGACGAGCCATACTACCGCCAGCACGGGCACCATGATGAAGAGGAAGA GGATGGGATGATCCTGAGTACGGCGCAGCTGGATTGCAGGCTGCTTCCAG GCGAGCTCATTGTTGCCTTCGTGAAGAGAGAACATGTCTTGCAAGCGTCA TGGATCATCCTTAAGGTTGCCTTGTATGCCGAGGAAGAAGAGAAGAACCA AGACGAAGAGGAAGAGGATGAGGAAAGTGCAATTGTACGACGACGGCAGG AAGACGGACCCGACAATCACTATCAGCACCTGCACCACCAGCATCGACGA CGCCAGCACCAGGAGCCTGCCGCCATGCGCGCCCTCATACTCGACGGCGA CGGGGCCACCCTTGTCATGTCTCAACACCACTACTCCCTTATCCAACGCG CGGGCCTATCCCACCTCATCACCCTCGCCCCACACCCTTGGCGCGCCTTC GAATTCTGTCTCGGCCACACCGTCGCCGACGTCCCCGGGGTCGTCAATCA TTTGGCCAAGCTCATGGCGGACGAAAACATTTCCATCCTTCACCACTCCA CCTACGGTGCCGAGATCTTCCTGGTTCAATCCCGCGAATTAAAAAAGGCC TTGAAATGCGTCCGCGAAAAGGTTGACGCCACATTACACGTCGTCTTGGC CGCACGGGCAGTGCGTGCAGCTTCTTCAGTGTCGGGAGCTGCGTCAGCAG CAGGAGGAACAGGAACGGACTCGGAGGGCGGGTCTCCGCCGCTGCCCGAA TCGCCGCAGAAAAAGGAGAAGCAGGTGGAGAAGAGGGGAGGAAGGAAGAA AGGGGGAAAAGAAGGAGAGGGTGATGAGTACGACCAGAAGATATATGAGA GCGGGGTGAGCAGTGACTGGGAGGGGAAGGGTGGGACGTCGACGTCGACG CCAGCAGCGCCTTCGACACTAATTGCCTCCTGGGCACAAAAGCTACGGAT ACGCAACCCCTTGCATCCCCTCCTCTCTGCTCCCTCATCCTCGTCCTCGT CCTCCCTTCGCTCCCCTGTCTCGGCCTCCTCCACCCCTTCCTCTTCCTCA GCCACAGGAGTCCCCCTCTCTTCTTTCTTTTCGAGTCTGCCCGCCACTGC TGGACAAACACTATCTGCAACAGTAGCAGCAGCACCAGCAGCGGCGGCAG CCGCAGCAGCAGCAAAAGGAACGTCAACATCAGCTTCTATCCCCCCACCT GTCAACTGCAACAGCAATAACACCAACCCTCCATTCTCCTCCTCCCCCTT CTCCACCTCCCTGGGACCCCGCTGCCCTCCCCTCGTCCTTCGTGTGATGT CACAGCCGTTGGTGTTAGCTAGGCTCAACAAGAATTACCTCCAAGAATGC TCGCACCTCCTCGCGCGTCTCCTTCTCTTTGACCGCAGGCCCGTGCATCG TTTCGGCTCCTCTTCTTCGCATTCTAGAAGGTTTAGGAAGGAACGGAAGG AACGCAAGATGAAGATGAAGAGGGAGGGTGGAAGAGGGGGCGGGAGGGAC AGCATCGACGGGCACATCTGCTCACCTGCCACGGCTGGTGCTGCCACTTC GCACGTGATTCCCATCATCCACTCGTCCACCTCCTCCTCCCTCACTCCCT CCTCTGTCGCCTCCTCCTCCTCCGCCTCCTCCTCCTCCTCCGCCTCCTCC TCCGCCTCCTCCTCCTCCTCTGCCTTCTCCTTCTCTTCCTCGCTCAACCC CTCCCCCGGAACCCACCAGAGAAAGGGAAAAGGGCGCGAAGGTTTCCTTC GCTCTCACCTCCAGCAACACATTCTCTCCTCCCCCTCCCTCCCTCCCCAT CTCTCCTCCTCCTCCCCCTCCTCCCTCCCTTCGTCCTCCGACTTTGGTCC CTTGGCAATGATTGAAATGGAGGGAGAGGTAACCCTCCTACTCGAGGAAG CATCGCTCTCCCTCTTCCCCCCCCTTGCCCTCCTCCCCTGTCCTCTCCGA TGGCGGGCGTTGAAGTTGTGTGGTCGTCCGTTTGGATTCGAAGAGACGGG CTTGGTGGCCGCGATGAGTAAGATGGATGACTCCATCCCACTGCTTAATT TTTCGACATTTCAGACGAACTTTTCGCTGGTCGAGGAGGGAGGAGTGGCT GGGACCGTGGCAACATTACGGAGGGAGGTAGGGGCAGGAGTGGACGGATG GGAGGAGGAAGATGAGGAGGAAGAGGAGAAGGAAGAGGAAGAGGAAGAGG AGGAGGAGGAAGGGGAGAAAGGGGATGATGAGGAGGAGGGGCTGGAACCG GGAGGGGGAAGGAAGGTTGGGATGGGATTGAGTCGGAGCGTGGAGGAGGG AAGAGGTCGGGGAGGAGGGAGGGCGATGTTTCATTCGGGGGGAGGGTTTG TACGATTTTGAGCCAAAATAGAGAGGATGAAGAAGAGAAAGGTGGGGGAG ACATGGGAGGAAATTGTAGACAGGAAAGAGGGATGACGAATACTGTGTGT GGGAATGGCACAGCAGCACAAAGGCGCCAGGATTTATGGAGAAAACAAGT AGGTGTATGTGTATATTCACACAACAAATACATGGAGAGGTAAAACAAGT TGTTCGCAGAGGAAGTATGATAGCAAGAGAAAGGGTGCAGCGTGAGATGC AAGATTCTAGCTGGGGTGGCAAACACTGAAAAGAATGATGTCTCTTTCAA TA back to topprotein sequence of NO15G02580.1 >NO15G02580.1-protein ID=NO15G02580.1-protein|Name=NO15G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=787bp MDEPYYRQHGHHDEEEEDGMILSTAQLDCRLLPGELIVAFVKREHVLQAS WIILKVALYAEEEEKNQDEEEEDEESAIVRRRQEDGPDNHYQHLHHQHRR RQHQEPAAMRALILDGDGATLVMSQHHYSLIQRAGLSHLITLAPHPWRAF EFCLGHTVADVPGVVNHLAKLMADENISILHHSTYGAEIFLVQSRELKKA LKCVREKVDATLHVVLAARAVRAASSVSGAASAAGGTGTDSEGGSPPLPE SPQKKEKQVEKRGGRKKGGKEGEGDEYDQKIYESGVSSDWEGKGGTSTST PAAPSTLIASWAQKLRIRNPLHPLLSAPSSSSSSSLRSPVSASSTPSSSS ATGVPLSSFFSSLPATAGQTLSATVAAAPAAAAAAAAAKGTSTSASIPPP VNCNSNNTNPPFSSSPFSTSLGPRCPPLVLRVMSQPLVLARLNKNYLQEC SHLLARLLLFDRRPVHRFGSSSSHSRRFRKERKERKMKMKREGGRGGGRD SIDGHICSPATAGAATSHVIPIIHSSTSSSLTPSSVASSSSASSSSSASS SASSSSSAFSFSSSLNPSPGTHQRKGKGREGFLRSHLQQHILSSPSLPPH LSSSSPSSLPSSSDFGPLAMIEMEGEVTLLLEEASLSLFPPLALLPCPLR WRALKLCGRPFGFEETGLVAAMSKMDDSIPLLNFSTFQTNFSLVEEGGVA GTVATLRREVGAGVDGWEEEDEEEEEKEEEEEEEEEEGEKGDDEEEGLEP GGGRKVGMGLSRSVEEGRGRGGGRAMFHSGGGFVRF* back to topmRNA from alignment at chr15:710730..713760+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G02580.1 ID=NO15G02580.1|Name=NO15G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=3031bp|location=Sequence derived from alignment at chr15:710730..713760+ (Nannochloropsis oceanica) ATGGACGAGCCATACTACCGCCAGCACGGGCACCATGATGAAGAGGAAGA
GGATGGGATGATCCTGAGTACGGCGCAGCTGGATTGCAGGCTGCTTCCAG
GCGAGCTCATTGTTGCCTTCGTGAAGAGTGAGTGAAAATGGAAATGGGAG
GGGGGGGGGTAGGCCCTTGAGGTTAAGGCTCTTCTACGTTGGCTTACCCA
CTCATATTGTCTCGTTGCATGCACAAATGGATAACAGGAGAACATGTCTT
GCAAGCGTCATGGATCATCCTTAAGGTTGCCTTGTATGCCGAGGAAGAAG
AGAAGAACCAAGACGAAGAGGAAGAGGATGAGGAAAGTGCAATTGTACGA
CGACGGCAGGAAGACGGACCCGACAATCACTATCAGCACCTGCACCACCA
GCATCGACGACGCCAGCACCAGGAGGTAAAGGCGAGAACGCAGAAGAATG
AGATGGGAGAGAGCGTTGACATCGTGACTGAATCCATGGCAGGGCAACCA
CCGGGACCTCCTATCCTTACTCACCTCATTCACTCCACTCCCGCCGTCGC
CCCTCCCCTCCTTCCTCAACAGCCTGCCGCCATGCGCGCCCTCATACTCG
ACGGCGACGGGGCCACCCTTGTCATGTCTCAACACCACTACTCCCTTATC
CAACGCGCGGGCCTATCCCACCTCATCACCCTCGCCCCACACCCTTGGCG
CGCCTTCGAATTCTGTCTCGGCCACACCGTCGCCGACGTCCCCGGGGTCG
TCAATCATTTGGCCAAGCTCATGGCGGACGAAAACATTTCCATCCTTCAC
CACTCCACCTACGGTGCCGAGATCTTCCTGGTTCAATCCCGCGAATTAAA
AAAGGCCTTGAAATGCGTCCGCGAAAAGGTTGACGCCACATTACACGTCG
TCTTGGCCGCACGGGCAGTGCGTGCAGCTTCTTCAGTGTCGGGAGCTGCG
TCAGCAGCAGGAGGAACAGGAACGGACTCGGAGGGCGGGTCTCCGCCGCT
GCCCGAATCGCCGCAGAAAAAGGAGAAGCAGGTGGAGAAGAGGGGAGGAA
GGAAGAAAGGGGGAAAAGAAGGAGAGGGTGATGAGTACGACCAGAAGATA
TATGAGAGCGGGGTGAGCAGTGACTGGGAGGGGAAGGGTGGGACGTCGAC
GTCGACGCCAGCAGCGCCTTCGACACTAATTGCCTCCTGGGCACAAAAGC
TACGGATACGCAACCCCTTGCATCCCCTCCTCTCTGCTCCCTCATCCTCG
TCCTCGTCCTCCCTTCGCTCCCCTGTCTCGGCCTCCTCCACCCCTTCCTC
TTCCTCAGCCACAGGAGTCCCCCTCTCTTCTTTCTTTTCGAGTCTGCCCG
CCACTGCTGGACAAAGTGCCCCCTCTCTAGCCTCACACCTCCTTCCCCCC
CCCTCCCTCCTCCTCCTCCTCCTTCTCCTTCATCCCCGGCATCCACTGAC
TTCGCCGCACATATTCTACGCCCCTATACACACGTAGCACTATCTGCAAC
AGTAGCAGCAGCACCAGCAGCGGCGGCAGCCGCAGCAGCAGCAAAAGGAA
CGTCAACATCAGCTTCTATCCCCCCACCTGTCAACTGCAACAGCAATAAC
ACCAACCCTCCATTCTCCTCCTCCCCCTTCTCCACCTCCCTGGGACCCCG
CTGCCCTCCCCTCGTCCTTCGTGTGATGTCACAGCCGTTGGTGTTAGCTA
GGCTCAACAAGAATTACCTCCAAGAATGCTCGCACCTCCTCGCGCGTCTC
CTTCTCTTTGACCGCAGGCCCGTGCATCGTTTCGGCTCCTCTTCTTCGCA
TTCTAGAAGGTTTAGGAAGGAACGGAAGGAACGCAAGATGAAGATGAAGA
GGGAGGGTGGAAGAGGGGGCGGGAGGGACAGCATCGACGGGCACATCTGC
TCACCTGCCACGGCTGGTGCTGCCACTTCGCACGTGATTCCCATCATCCA
CTCGTCCACCTCCTCCTCCCTCACTCCCTCCTCTGTCGCCTCCTCCTCCT
CCGCCTCCTCCTCCTCCTCCGCCTCCTCCTCCGCCTCCTCCTCCTCCTCT
GCCTTCTCCTTCTCTTCCTCGCTCAACCCCTCCCCCGGAACCCACCAGAG
AAAGGGAAAAGGGCGCGAAGGTTTCCTTCGCTCTCACCTCCAGCAACACA
TTCTCTCCTCCCCCTCCCTCCCTCCCCATCTCTCCTCCTCCTCCCCCTCC
TCCCTCCCTTCGTCCTCCGACTTTGGTCCCTTGGCAATGATTGAAATGGA
GGGAGAGGTAACCCTCCTACTCGAGGAAGCATCGCTCTCCCTCTTCCCCC
CCCTTGCCCTCCTCCCCTGTCCTCTCCGATGGCGGGCGTTGAAGTTGTGT
GGTCGTCCGTTTGGATTCGAAGAGACGGGCTTGGTGGCCGCGATGAGTAA
GATGGATGACTCCATCCCACTGCTTAATTTTTCGACATTTCAGACGAACT
TTTCGCTGGTCGAGGAGGGAGGAGTGGCTGGGACCGTGGCAACATTACGG
AGGGAGGTAGGGGCAGGAGTGGACGGATGGGAGGAGGAAGATGAGGAGGA
AGAGGAGAAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGAAGGGGAGAAAG
GGGATGATGAGGAGGAGGGGCTGGAACCGGGAGGGGGAAGGAAGGTTGGG
ATGGGATTGAGTCGGAGCGTGGAGGAGGGAAGAGGTCGGGGAGGAGGGAG
GGCGATGTTTCATTCGGGGGGAGGGTTTGTACGATTTTGAGCCAAAATAG
AGAGGATGAAGAAGAGAAAGGTGGGGGAGACATGGGAGGAAATTGTAGAC
AGGAAAGAGGGATGACGAATACTGTGTGTGGGAATGGCACAGCAGCACAA
AGGCGCCAGGATTTATGGAGAAAACAAGTAGGTGTATGTGTATATTCACA
CAACAAATACATGGAGAGGTAAAACAAGTTGTTCGCAGAGGAAGTATGAT
AGCAAGAGAAAGGGTGCAGCGTGAGATGCAAGATTCTAGCTGGGGTGGCA
AACACTGAAAAGAATGATGTCTCTTTCAATA back to topCoding sequence (CDS) from alignment at chr15:710730..713760+ >NO15G02580.1 ID=NO15G02580.1|Name=NO15G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=2361bp|location=Sequence derived from alignment at chr15:710730..713760+ (Nannochloropsis oceanica) ATGGACGAGCCATACTACCGCCAGCACGGGCACCATGATGAAGAGGAAGA GGATGGGATGATCCTGAGTACGGCGCAGCTGGATTGCAGGCTGCTTCCAG GCGAGCTCATTGTTGCCTTCGTGAAGAGAGAACATGTCTTGCAAGCGTCA TGGATCATCCTTAAGGTTGCCTTGTATGCCGAGGAAGAAGAGAAGAACCA AGACGAAGAGGAAGAGGATGAGGAAAGTGCAATTGTACGACGACGGCAGG AAGACGGACCCGACAATCACTATCAGCACCTGCACCACCAGCATCGACGA CGCCAGCACCAGGAGCCTGCCGCCATGCGCGCCCTCATACTCGACGGCGA CGGGGCCACCCTTGTCATGTCTCAACACCACTACTCCCTTATCCAACGCG CGGGCCTATCCCACCTCATCACCCTCGCCCCACACCCTTGGCGCGCCTTC GAATTCTGTCTCGGCCACACCGTCGCCGACGTCCCCGGGGTCGTCAATCA TTTGGCCAAGCTCATGGCGGACGAAAACATTTCCATCCTTCACCACTCCA CCTACGGTGCCGAGATCTTCCTGGTTCAATCCCGCGAATTAAAAAAGGCC TTGAAATGCGTCCGCGAAAAGGTTGACGCCACATTACACGTCGTCTTGGC CGCACGGGCAGTGCGTGCAGCTTCTTCAGTGTCGGGAGCTGCGTCAGCAG CAGGAGGAACAGGAACGGACTCGGAGGGCGGGTCTCCGCCGCTGCCCGAA TCGCCGCAGAAAAAGGAGAAGCAGGTGGAGAAGAGGGGAGGAAGGAAGAA AGGGGGAAAAGAAGGAGAGGGTGATGAGTACGACCAGAAGATATATGAGA GCGGGGTGAGCAGTGACTGGGAGGGGAAGGGTGGGACGTCGACGTCGACG CCAGCAGCGCCTTCGACACTAATTGCCTCCTGGGCACAAAAGCTACGGAT ACGCAACCCCTTGCATCCCCTCCTCTCTGCTCCCTCATCCTCGTCCTCGT CCTCCCTTCGCTCCCCTGTCTCGGCCTCCTCCACCCCTTCCTCTTCCTCA GCCACAGGAGTCCCCCTCTCTTCTTTCTTTTCGAGTCTGCCCGCCACTGC TGGACAAACACTATCTGCAACAGTAGCAGCAGCACCAGCAGCGGCGGCAG CCGCAGCAGCAGCAAAAGGAACGTCAACATCAGCTTCTATCCCCCCACCT GTCAACTGCAACAGCAATAACACCAACCCTCCATTCTCCTCCTCCCCCTT CTCCACCTCCCTGGGACCCCGCTGCCCTCCCCTCGTCCTTCGTGTGATGT CACAGCCGTTGGTGTTAGCTAGGCTCAACAAGAATTACCTCCAAGAATGC TCGCACCTCCTCGCGCGTCTCCTTCTCTTTGACCGCAGGCCCGTGCATCG TTTCGGCTCCTCTTCTTCGCATTCTAGAAGGTTTAGGAAGGAACGGAAGG AACGCAAGATGAAGATGAAGAGGGAGGGTGGAAGAGGGGGCGGGAGGGAC AGCATCGACGGGCACATCTGCTCACCTGCCACGGCTGGTGCTGCCACTTC GCACGTGATTCCCATCATCCACTCGTCCACCTCCTCCTCCCTCACTCCCT CCTCTGTCGCCTCCTCCTCCTCCGCCTCCTCCTCCTCCTCCGCCTCCTCC TCCGCCTCCTCCTCCTCCTCTGCCTTCTCCTTCTCTTCCTCGCTCAACCC CTCCCCCGGAACCCACCAGAGAAAGGGAAAAGGGCGCGAAGGTTTCCTTC GCTCTCACCTCCAGCAACACATTCTCTCCTCCCCCTCCCTCCCTCCCCAT CTCTCCTCCTCCTCCCCCTCCTCCCTCCCTTCGTCCTCCGACTTTGGTCC CTTGGCAATGATTGAAATGGAGGGAGAGGTAACCCTCCTACTCGAGGAAG CATCGCTCTCCCTCTTCCCCCCCCTTGCCCTCCTCCCCTGTCCTCTCCGA TGGCGGGCGTTGAAGTTGTGTGGTCGTCCGTTTGGATTCGAAGAGACGGG CTTGGTGGCCGCGATGAGTAAGATGGATGACTCCATCCCACTGCTTAATT TTTCGACATTTCAGACGAACTTTTCGCTGGTCGAGGAGGGAGGAGTGGCT GGGACCGTGGCAACATTACGGAGGGAGGTAGGGGCAGGAGTGGACGGATG GGAGGAGGAAGATGAGGAGGAAGAGGAGAAGGAAGAGGAAGAGGAAGAGG AGGAGGAGGAAGGGGAGAAAGGGGATGATGAGGAGGAGGGGCTGGAACCG GGAGGGGGAAGGAAGGTTGGGATGGGATTGAGTCGGAGCGTGGAGGAGGG AAGAGGTCGGGGAGGAGGGAGGGCGATGTTTCATTCGGGGGGAGGGTTTG TACGATTTTGA back to top
|