NO15G02340.1, NO15G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02340.1
Unique NameNO15G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr15:648672..650096 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:648672..650096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02340.1 vs.
Match: EWM22375.1 (hypothetical protein Naga_100066g26 [Nannochloropsis gaditana])

HSP 1 Score: 307.4 bits (786), Expect = 7.800e-80
Identity = 189/347 (54.47%), Postives = 229/347 (65.99%), Query Frame = 0 
Query:    1 MKPFSSPSSSSSLSSS-RSLALVLSSIVGGGIL-VTVLHRQGLLM----RLLKWQHHRKGQPLPREAAERIITHMNTDHRPHLVLYAKHFAGLASATAASILSIDTAGMDLSVILPSSSTPRLVRISFPQGLLTSPIDARTVLVSMADEAGRALGVAVKIEESDAEILAKLDPLTDTKFGLGRMEMGSKECLAGTVKKYDTHVFVLWKKATDWPKNVEDGEKGSIAITLPQALHAALKKHAEGITTGKAKLNVAECSEEEGDEDGTLLLFPQELCITGVTVENAEAVVEALLVGTEGGGEDAEVGGGLGERVAETRGRLAGIEGVDVMDRIPRNHVFVCCHLKRDKR 342
            MKP     +  S S + R+L ++ SS+VGG +  V + H + L +    R L  + +R G+ LP E AERII HMN DH   LVLYAKH+AGLAS  AA++  ID+ G++LSV L SS+ PR V I+FP G L S  DAR VLV+MA+ A +ALG  VK  ESD     K DPLTDT+ G  R EMGSK+CLAGTVKKYDTH+FVLWK+A +WPK+VE G  G+   TLPQALHAALK  A  I+ G  KLNVAEC +   D+DGTLLLFPQELC+TGVT  NA+AVVEALL G    GED    G      AE  GRL G+     +  +P  H+FVCCH  RDKR
Sbjct:    1 MKPVDHIRAFLSRSPAPRTLLILFSSLVGGVVARVFLKHFRSLALPASLRCLL-RGNRGGERLPPEVAERIIAHMNKDHGAQLVLYAKHYAGLASTIAATLTYIDSTGVELSVTLSSSNAPRRVYIAFPHGSLPSVHDARAVLVAMAETAAQALGSEVKAGESDEN---KSDPLTDTEHGFARAEMGSKKCLAGTVKKYDTHMFVLWKRAQEWPKHVEAGAAGNDPPTLPQALHAALKDCAGSISCGTVKLNVAECRDGSEDKDGTLLLFPQELCVTGVTEANAKAVVEALLAGEVEEGEDGR-WGNRTRVAAEKVGRLKGV----AVKSLPGQHLFVCCHGNRDKR 338
The following BLAST results are available for this feature:
BLAST of NO15G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22375.17.800e-8054.47hypothetical protein Naga_100066g26 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02340NO15G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02340.1NO15G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02340.1.cds1NO15G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02340.1 ID=NO15G02340.1|Name=NO15G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp
ATGAAGCCCTTTTCCTCTCCTTCCTCGTCTTCGTCCCTCTCTAGCTCCCG
ATCCCTGGCGCTGGTGCTCTCGTCCATCGTTGGAGGGGGAATACTAGTCA
CAGTGCTGCATCGTCAAGGTCTCCTCATGCGCCTTCTCAAGTGGCAACAC
CACCGAAAGGGACAGCCTTTACCCCGCGAGGCCGCCGAGCGGATTATCAC
GCACATGAATACTGACCACAGGCCGCATCTTGTTCTGTATGCCAAGCACT
TCGCAGGTCTGGCGAGCGCCACCGCCGCTAGCATTCTCAGCATCGATACG
GCGGGGATGGACCTCTCTGTCATCCTCCCCTCCTCCTCCACTCCTCGTCT
AGTGCGCATTTCCTTCCCCCAAGGCCTGCTCACCTCTCCCATAGATGCCC
GAACCGTGCTGGTGTCCATGGCAGATGAAGCAGGAAGAGCACTCGGCGTA
GCCGTCAAAATCGAGGAGTCAGACGCAGAGATTCTGGCAAAGCTTGATCC
ATTGACAGACACAAAATTCGGCTTGGGGCGCATGGAAATGGGCAGTAAAG
AGTGCTTGGCGGGTACGGTGAAGAAATATGATACGCATGTGTTTGTTTTG
TGGAAGAAAGCGACTGATTGGCCTAAAAATGTGGAGGATGGAGAAAAGGG
GAGTATTGCTATAACCCTCCCTCAGGCCTTGCATGCTGCATTAAAGAAAC
ACGCGGAAGGAATAACAACAGGCAAGGCTAAGTTGAACGTGGCCGAGTGC
AGTGAGGAGGAAGGCGACGAGGACGGGACTCTGTTGTTGTTCCCCCAGGA
ATTGTGTATTACCGGAGTGACTGTGGAGAATGCCGAGGCTGTGGTGGAAG
CTCTGTTGGTGGGGACGGAGGGGGGAGGTGAGGACGCGGAGGTGGGAGGG
GGTCTAGGGGAGCGGGTGGCCGAGACGAGGGGTAGGTTGGCGGGGATTGA
GGGGGTGGATGTGATGGATCGGATACCGCGGAATCATGTGTTTGTGTGCT
GCCATTTAAAGAGGGATAAGAGGTGTGGGTTGGTGGGCCCTTTTTTGATC
AGGGAGTTCAGGAAATTGATTACGTTACAGCGAGGGAAGGAGGGGGAGAA
TAACGATGTGTTTGAATTTGAGTGTCCGGTACGAGCTTGCAGTCATGTTG
GAGGCCATGCGTATGCTGGGAATGTGATCACATTCAGCAGGAGGGAGAAA
GAGGGAGGAGGGAGGAAGGGAGGGAGGGTAGTGGGGGATTGGTGGGGGTA
TGTCACGCCGGTGGTTGTCAAGGATTTAGTGGAGAGACACCTTGTAAAGG
GAGAGTTGCTGGAGGGTGTATGGAGGGGACAGATGGGCTTGGCCGAGGAG
GAGCAGAAGCAGGTGGCACTGAAGGAGGGGAAGTGCGACGGGTGCGCTTG
TGGGGAAAATTCGACGGCGTCGTAG
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protein sequence of NO15G02340.1

>NO15G02340.1-protein ID=NO15G02340.1-protein|Name=NO15G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MKPFSSPSSSSSLSSSRSLALVLSSIVGGGILVTVLHRQGLLMRLLKWQH
HRKGQPLPREAAERIITHMNTDHRPHLVLYAKHFAGLASATAASILSIDT
AGMDLSVILPSSSTPRLVRISFPQGLLTSPIDARTVLVSMADEAGRALGV
AVKIEESDAEILAKLDPLTDTKFGLGRMEMGSKECLAGTVKKYDTHVFVL
WKKATDWPKNVEDGEKGSIAITLPQALHAALKKHAEGITTGKAKLNVAEC
SEEEGDEDGTLLLFPQELCITGVTVENAEAVVEALLVGTEGGGEDAEVGG
GLGERVAETRGRLAGIEGVDVMDRIPRNHVFVCCHLKRDKRCGLVGPFLI
REFRKLITLQRGKEGENNDVFEFECPVRACSHVGGHAYAGNVITFSRREK
EGGGRKGGRVVGDWWGYVTPVVVKDLVERHLVKGELLEGVWRGQMGLAEE
EQKQVALKEGKCDGCACGENSTAS*
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mRNA from alignment at chr15:648672..650096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02340.1 ID=NO15G02340.1|Name=NO15G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp|location=Sequence derived from alignment at chr15:648672..650096- (Nannochloropsis oceanica)
ATGAAGCCCTTTTCCTCTCCTTCCTCGTCTTCGTCCCTCTCTAGCTCCCG
ATCCCTGGCGCTGGTGCTCTCGTCCATCGTTGGAGGGGGAATACTAGTCA
CAGTGCTGCATCGTCAAGGTCTCCTCATGCGCCTTCTCAAGTGGCAACAC
CACCGAAAGGGACAGCCTTTACCCCGCGAGGCCGCCGAGCGGATTATCAC
GCACATGAATACTGACCACAGGCCGCATCTTGTTCTGTATGCCAAGCACT
TCGCAGGTCTGGCGAGCGCCACCGCCGCTAGCATTCTCAGCATCGATACG
GCGGGGATGGACCTCTCTGTCATCCTCCCCTCCTCCTCCACTCCTCGTCT
AGTGCGCATTTCCTTCCCCCAAGGCCTGCTCACCTCTCCCATAGATGCCC
GAACCGTGCTGGTGTCCATGGCAGATGAAGCAGGAAGAGCACTCGGCGTA
GCCGTCAAAATCGAGGAGTCAGACGCAGAGATTCTGGCAAAGCTTGATCC
ATTGACAGACACAAAATTCGGCTTGGGGCGCATGGAAATGGGCAGTAAAG
AGTGCTTGGCGGGTACGGTGAAGAAATATGATACGCATGTGTTTGTTTTG
TGGAAGAAAGCGACTGATTGGCCTAAAAATGTGGAGGATGGAGAAAAGGG
GAGTATTGCTATAACCCTCCCTCAGGCCTTGCATGCTGCATTAAAGAAAC
ACGCGGAAGGAATAACAACAGGCAAGGCTAAGTTGAACGTGGCCGAGTGC
AGTGAGGAGGAAGGCGACGAGGACGGGACTCTGTTGTTGTTCCCCCAGGA
ATTGTGTATTACCGGAGTGACTGTGGAGAATGCCGAGGCTGTGGTGGAAG
CTCTGTTGGTGGGGACGGAGGGGGGAGGTGAGGACGCGGAGGTGGGAGGG
GGTCTAGGGGAGCGGGTGGCCGAGACGAGGGGTAGGTTGGCGGGGATTGA
GGGGGTGGATGTGATGGATCGGATACCGCGGAATCATGTGTTTGTGTGCT
GCCATTTAAAGAGGGATAAGAGGTGTGGGTTGGTGGGCCCTTTTTTGATC
AGGGAGTTCAGGAAATTGATTACGTTACAGCGAGGGAAGGAGGGGGAGAA
TAACGATGTGTTTGAATTTGAGTGTCCGGTACGAGCTTGCAGTCATGTTG
GAGGCCATGCGTATGCTGGGAATGTGATCACATTCAGCAGGAGGGAGAAA
GAGGGAGGAGGGAGGAAGGGAGGGAGGGTAGTGGGGGATTGGTGGGGGTA
TGTCACGCCGGTGGTTGTCAAGGATTTAGTGGAGAGACACCTTGTAAAGG
GAGAGTTGCTGGAGGGTGTATGGAGGGGACAGATGGGCTTGGCCGAGGAG
GAGCAGAAGCAGGTGGCACTGAAGGAGGGGAAGTGCGACGGGTGCGCTTG
TGGGGAAAATTCGACGGCGTCGTAG
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Coding sequence (CDS) from alignment at chr15:648672..650096-

>NO15G02340.1 ID=NO15G02340.1|Name=NO15G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr15:648672..650096- (Nannochloropsis oceanica)
ATGAAGCCCTTTTCCTCTCCTTCCTCGTCTTCGTCCCTCTCTAGCTCCCG
ATCCCTGGCGCTGGTGCTCTCGTCCATCGTTGGAGGGGGAATACTAGTCA
CAGTGCTGCATCGTCAAGGTCTCCTCATGCGCCTTCTCAAGTGGCAACAC
CACCGAAAGGGACAGCCTTTACCCCGCGAGGCCGCCGAGCGGATTATCAC
GCACATGAATACTGACCACAGGCCGCATCTTGTTCTGTATGCCAAGCACT
TCGCAGGTCTGGCGAGCGCCACCGCCGCTAGCATTCTCAGCATCGATACG
GCGGGGATGGACCTCTCTGTCATCCTCCCCTCCTCCTCCACTCCTCGTCT
AGTGCGCATTTCCTTCCCCCAAGGCCTGCTCACCTCTCCCATAGATGCCC
GAACCGTGCTGGTGTCCATGGCAGATGAAGCAGGAAGAGCACTCGGCGTA
GCCGTCAAAATCGAGGAGTCAGACGCAGAGATTCTGGCAAAGCTTGATCC
ATTGACAGACACAAAATTCGGCTTGGGGCGCATGGAAATGGGCAGTAAAG
AGTGCTTGGCGGGTACGGTGAAGAAATATGATACGCATGTGTTTGTTTTG
TGGAAGAAAGCGACTGATTGGCCTAAAAATGTGGAGGATGGAGAAAAGGG
GAGTATTGCTATAACCCTCCCTCAGGCCTTGCATGCTGCATTAAAGAAAC
ACGCGGAAGGAATAACAACAGGCAAGGCTAAGTTGAACGTGGCCGAGTGC
AGTGAGGAGGAAGGCGACGAGGACGGGACTCTGTTGTTGTTCCCCCAGGA
ATTGTGTATTACCGGAGTGACTGTGGAGAATGCCGAGGCTGTGGTGGAAG
CTCTGTTGGTGGGGACGGAGGGGGGAGGTGAGGACGCGGAGGTGGGAGGG
GGTCTAGGGGAGCGGGTGGCCGAGACGAGGGGTAGGTTGGCGGGGATTGA
GGGGGTGGATGTGATGGATCGGATACCGCGGAATCATGTGTTTGTGTGCT
GCCATTTAAAGAGGGATAAGAGGTGTGGGTTGGTGGGCCCTTTTTTGATC
AGGGAGTTCAGGAAATTGATTACGTTACAGCGAGGGAAGGAGGGGGAGAA
TAACGATGTGTTTGAATTTGAGTGTCCGGTACGAGCTTGCAGTCATGTTG
GAGGCCATGCGTATGCTGGGAATGTGATCACATTCAGCAGGAGGGAGAAA
GAGGGAGGAGGGAGGAAGGGAGGGAGGGTAGTGGGGGATTGGTGGGGGTA
TGTCACGCCGGTGGTTGTCAAGGATTTAGTGGAGAGACACCTTGTAAAGG
GAGAGTTGCTGGAGGGTGTATGGAGGGGACAGATGGGCTTGGCCGAGGAG
GAGCAGAAGCAGGTGGCACTGAAGGAGGGGAAGTGCGACGGGTGCGCTTG
TGGGGAAAATTCGACGGCGTCGTAG
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Synonyms
Publications