NO15G01600.2, NO15G01600.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G01600.2
Unique NameNO15G01600.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length700
Alignment locationchr15:447830..448938 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:447830..448938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G01600.2 vs.
Match: EWM22425.1 (phd finger-like domain-containing protein 5a [Nannochloropsis gaditana])

HSP 1 Score: 194.1 bits (492), Expect = 1.800e-46
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 
Query:    2 QCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 88
            +CDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR
Sbjct:   25 KCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCRECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR 110
The following BLAST results are available for this feature:
BLAST of NO15G01600.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22425.11.800e-4698.84phd finger-like domain-containing protein 5a [Nann... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G01600NO15G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G01600.2NO15G01600.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G01600.2.cds1NO15G01600.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01600.2.cds2NO15G01600.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G01600.2.cds3NO15G01600.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G01600.2 ID=NO15G01600.2|Name=NO15G01600.2|organism=Nannochloropsis oceanica|type=mRNA|length=700bp
CCCTCATAGAATCGTTGCTCCTTCCTCCGGTGTCATCTCGTTCTCAGCCA
TGGCCAAGCATCATGCCGACCTTGTGATGTGCCGGAAGCAGCCCGGGATC
GCCATCGGCCGCTTGTGTGAAAAGGTAAGTGGAGTGAAGGGAAGCTGGAG
CCGGGTCAACTCGCTGCATATACATGCATCACCTCAGTGCTAACCTGACC
ACGCGAATATCTCATCAACCACATCATGCAGTGCGATGGCAAGTGCGTGA
TTTGTGATAGTTACGTCCGACCCTCCACCTTGGTCCGCATCTGCGACGAA
TGTAATTACGGCTCCTATGAAGGTCGGTGCGTTATCTGTGGCGGACCCGG
CATCTCTGACGCGTATTACTGCCGCGAATGCACCCAAGAAGAGAAGGACC
GGGACGGCTGCCCCAAGATTGTCAACTTGGGAGCATCCAAAACAGATTTA
TTCTACGAACGCAAAAAGTATGGATTTAAGCGGCGATGAGGTAGGCGATT
GAGCAAGATGTGGTTGACAATGAAGCAGAAACGAAAGGACCATAGGAACT
GTAAATATTGAATGGGTGAAAACAAGCTTGGCGCTCAAAAGGGGGCTTTG
GGCATTTGGCATGTTTTGGGAGTGGATCTTAGGTAAATTTAGGGTCTTAC
ACTACCTATGCTAGCCACGCAGACAATAATCTTCAAATCATATCGCATGT
back to top

protein sequence of NO15G01600.2

>NO15G01600.2-protein ID=NO15G01600.2-protein|Name=NO15G01600.2|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MQCDGKCVICDSYVRPSTLVRICDECNYGSYEGRCVICGGPGISDAYYCR
ECTQEEKDRDGCPKIVNLGASKTDLFYERKKYGFKRR*
back to top

mRNA from alignment at chr15:447830..448938+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G01600.2 ID=NO15G01600.2|Name=NO15G01600.2|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp|location=Sequence derived from alignment at chr15:447830..448938+ (Nannochloropsis oceanica)
CCCTCATAGAATCGTTGCTCCTTCCTCCGGTGTCATCTCGTTCTCAGCCA
TGGCCAAGCATCATGCCGGTACGTAAGTGACACTGGGGATAATGGCGGGG
TAATGGGATCACTGCTGGAAGGAAGATGTAGGAGCTTGCATTTTAGAGCG
TATAGAGCCATAGCTTAGAGCACCCCCATCTTTTTCCTTTAATATGTATA
TGTAGACCTTGTGATGTGCCGGAAGCAGCCCGGGATCGCCATCGGCCGCT
TGTGTGAAAAGGTAAGTGGAGTGAAGGGAAGCTGGAGCCGGGTCAACTCG
CTGCATATACATGCATCACCTCAGTGCTAACCTGACCACGCGAATATCTC
ATCAACCACATCATGCAGTGCGATGGCAAGTGCGTGATTTGTGATAGTTA
CGTCCGACCCTCCACCTTGGTCCGCATCTGCGACGAATGTACGCACTCTA
ATACTTGTGTGGTTGGTATTGCCTATGACATGCCTCTTACGATTTCGACC
AACGCGTCCTCTTCCACTTCTCTTATCCTTACCACTTTCACCGTTGCCGC
TCCAATAGGTAATTACGGCTCCTATGAAGGTCGGTGCGTTATCTGTGGCG
GACCCGGCATCTCTGACGCGTATTACTGCCGCGAATGCACCCAAGAAGAG
AAGGACCGGGACGGCTGCCCCAAGATTGTCAACTTGGGAGCATCCAAAAC
AGATTTATTCTACGAACGCAAAAAGTATGGATTTAAGCGGTACGTTACTA
CCCCTTCGTACGCTATCTATCGTGTTCTTGTGATAAAGATGAAAAAGGCG
TTGATTAAGGCAGGGGAAGGTAATAAGAGTGAGTGTGCGTATTTTATGTG
TTGCTCCGAAGTTCTGATTTCCCCCCTCGTATTGTTCACAGGCGATGAGG
TAGGCGATTGAGCAAGATGTGGTTGACAATGAAGCAGAAACGAAAGGACC
ATAGGAACTGTAAATATTGAATGGGTGAAAACAAGCTTGGCGCTCAAAAG
GGGGCTTTGGGCATTTGGCATGTTTTGGGAGTGGATCTTAGGTAAATTTA
GGGTCTTACACTACCTATGCTAGCCACGCAGACAATAATCTTCAAATCAT
ATCGCATGT
back to top

Coding sequence (CDS) from alignment at chr15:447830..448938+

>NO15G01600.2 ID=NO15G01600.2|Name=NO15G01600.2|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at chr15:447830..448938+ (Nannochloropsis oceanica)
ATGCAGTGCGATGGCAAGTGCGTGATTTGTGATAGTTACGTCCGACCCTC
CACCTTGGTCCGCATCTGCGACGAATGTAATTACGGCTCCTATGAAGGTC
GGTGCGTTATCTGTGGCGGACCCGGCATCTCTGACGCGTATTACTGCCGC
GAATGCACCCAAGAAGAGAAGGACCGGGACGGCTGCCCCAAGATTGTCAA
CTTGGGAGCATCCAAAACAGATTTATTCTACGAACGCAAAAAGTATGGAT
TTAAGCGGCGATGA
back to top
Synonyms
Publications