NO15G01170.1, NO15G01170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G01170.1
Unique Name	NO15G01170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3798
Alignment location	chr15:333900..338584 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:333900..338584 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO15G01170.1 vs.
Match: EWM22437.1 (rna-binding protein 28 [Nannochloropsis gaditana])

HSP 1 Score: 822.0 bits (2122), Expect = 2.100e-234
Identity = 528/1044 (50.57%), Postives = 676/1044 (64.75%), Query Frame = 0

Query:    1 MNADDAQSIFVRNLPFSATTGDLEELCGGIGPVKRASIIQTADGESRGFGFVKFAIPEDAVRAAAILASTDFKGRIISVELAVKRGQKPAHAPLVSTAKRGKGKDSKQAASSFSSSSLSP--STEKDDREEGEDDRNEHNKAESAVSEVTVQLTASKASSNTTNTNKRGKAAAAAAASTAALTTSTSVKKKPGHALLSSQPSKTLIVFNLSSQTTEKQLYKRVKKIETPKSIKTELMDGLSRVAILVFDSPAAAKKVQKKLDQHTIHGQKISLRPFHPAGDKGATTGGVTAVTPG-----SILDLSQMRGQAKRNNRLIIRNLSFKATEADLKDALSAFGPVLEASIPRVKVRGVEGRRGFGFVTFACVEDAQKAVKYVGGLKVRGREVAVDMCMGRQEYQQDKHKKMAEGGASMNEEDTADTESASVVEEEMSISDNGALDGEIEACEGRAKDEEGGLVDEGEDADEDEDEDKDTSGEKGKGEGDEDEDQAKIAAPKPSDVNEGKTVFLRNIPFDATSDSLKMAFHDYAPVAFAIIVKDRATGMSKGTAFVKFKSTQGMDLVLDAAAAAGGSLTLLGRELKVDRAMEKEDAPQAREPGSRLDSDSTSND--SLKKIKADRRNLYLANEGLVVDSEAQDEIPNSDLEKRKREQTEKRTKLRNPFFFVSPTRLSIRNLNRTVLDKDLRALLVQAVRKGLEAEKVTSDDLKMHLRAQGLYEQASDSNTLIVSVPRPRDIHVKVKVMRDLDKKPEDAVYPSRGYGFADFSSHTHALAALRHVNNNPAFRSYAVQSGSGKCSRLIVSFAVENHKALQKKILRGEKVRTAAAPEAIR-KGVTSGRGNCIRKKRNLDEKQDGNEDGTGTDGLSDGGSADIGEKKLSRGQRQRELKRQRKSSGGDEGSARRTRTEIIFMEKPSSAAVDHRRE----KRTLTSALGDEKPARSPPQHMAFRSRSRGRGRMEEHGEDELTRLSAGATTTDTKMG--RRKSGVQKESNEDKQFVQTVNAYKQKLLGRGAVVAAGAEVGVKALNEKREGKGDRWF 1029
            M  DDAQSIFVRNLPFSA+T DLE LCG IGPVKRASIIQ+ DG SRGFGFVK+A+PEDA+RA AIL+  +  GR +S+ELA+KRGQKP++   +S A + +G + K++  S SS+SLS    T+K D    E  R+                TA+   S   N NKRGK   A+ AS          KKK GHALLSSQPSKTLI+FN++S+TTEKQ++KRV+K+E P S+K E +DG +RVAI+ F++  AAKKVQKKL+ H IHGQ I +RPFHP  +  A+     ++        +  DL +M+GQAKRNNRLIIRNLSFKATE DLK ALS FGP+LEA IP V VRG+EGRRGFGFVTFAC EDA+KAVK    L++RGREVAVD+CMGR+EY++++     +       E++ + E  +    E S+S    + G + + +   KD      D   +A E E+     + EK   +            P  SDVNEGK +F+RNIPFDATS+SLK+AFHDYAPVAFAIIVKD  TG+SKGTAF+KFKS  GM+  L AAA  GG+L LLGR++K+DRA+E +DAP+A      + SD  + D  S  K K DRRNLYLANEGL++ SEAQ+EIP  D+EKR+REQ EK+ KLRNP+FFVSPTRLSIRNL R+V D+++R LLVQAV+KG+ A++VT DDL +HL+AQGLYEQA     L V  PR RDIH+KVK+MRDL K P + V+PSRGY FADF+SH HALAALRH+NNNP F  +++ SG+ KCSRLIVSFAVENHKALQKK LRGEK+RTA APEA     +  G+ +    K  L +  D +  G     L +  S     K+  RG RQRE KR+RK  G ++      R     +E PS +  ++ +     KR L S   DE       Q +  R R+          +++ +  S G +T        +R++  + +  EDKQF +TVN YK+KLLG       G     ++   +  GK +RWF
Sbjct:    1 MIVDDAQSIFVRNLPFSASTTDLEVLCGKIGPVKRASIIQSGDGVSRGFGFVKYAMPEDAMRAVAILSGAELNGRTLSIELALKRGQKPSY---LSQASKAEGIEGKKSHESHSSTSLSTCVKTKKGDGTGPELKRSYD--------------TANSKDSMDRNNNKRGKHLDASGASK---------KKKSGHALLSSQPSKTLILFNMASRTTEKQIFKRVRKLEPPTSVKIEDIDGSARVAIIHFNTSLAAKKVQKKLNNHVIHGQIIKVRPFHPKVNIDASLEAKFSINDTLKRSLTNSDLDEMKGQAKRNNRLIIRNLSFKATEDDLKVALSKFGPILEARIPHVAVRGIEGRRGFGFVTFACAEDAEKAVKNEIPLRIRGREVAVDVCMGRKEYEEERKNHKEDDLNKGKAENSGEIEHNTTSFGEESVS----VPGNVPSSDITVKD-----TDTFSEAHEREETPTGVTTEKTCPKN-----------PPSSDVNEGKAIFVRNIPFDATSESLKLAFHDYAPVAFAIIVKDSTTGLSKGTAFIKFKSKVGMETTLSAAACGGGTLPLLGRDVKIDRALETKDAPKA------VVSDPVAADLSSGHKSKVDRRNLYLANEGLLIGSEAQNEIPKGDIEKRQREQAEKKAKLRNPYFFVSPTRLSIRNLRRSVGDEEVRNLLVQAVQKGINAKQVTPDDLILHLKAQGLYEQALRHEDLSVFQPRSRDIHIKVKIMRDLSKTPMNGVFPSRGYAFADFTSHIHALAALRHLNNNPTFSGFSITSGAAKCSRLIVSFAVENHKALQKKALRGEKIRTALAPEASSIARMVGGKHDAHSNKCALGKSDDPHNRGAHQAPLEEPCSETADRKR--RGSRQREQKRRRKDDGEEKNLLSVKRR----VESPSISQGNYLKALAAGKRKLAS---DESGGELSIQRL--RQRNSKAFVCRPVVKEQTSDFSYGESTFQAANPKIKRQAVSRTDMREDKQFFETVNDYKKKLLG-------GTTQVEQSFQNETTGKSERWF 974

The following BLAST results are available for this feature:

BLAST of NO15G01170.1 vs.

BLAST of NO15G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22437.1	2.100e-234	50.57	rna-binding protein 28 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G01170	NO15G01170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G01170.1	NO15G01170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G01170.1.cds1	NO15G01170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G01170.1.cds2	NO15G01170.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G01170.1.cds3	NO15G01170.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G01170.1.cds4	NO15G01170.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G01170.1.cds5	NO15G01170.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G01170.1.cds6	NO15G01170.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G01170.1.cds7	NO15G01170.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:333900..338584-
coding sequence from alignment at chr15:333900..338584-

mRNA sequence

>NO15G01170.1 ID=NO15G01170.1|Name=NO15G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=3798bp
CCCAAAATGCGGTAATAAGATCCAATAAGACGTTCGCTGCAAAATCGTGC
CAAGCCAACGCAATCTTGCTTTAGACATTCGCTGTCGATATTCAAATCAG
CCAAAGCTGGTGCCAAGCCGCCTTACCTCCCCTATAACATTCTAAAATGT
CTCCGTCCACGTCTATCACGAACCGCTATCTTGCATTAGACTTTTGCTGT
CGATACGCTCAAATCAGCCAAAGCTGGTTCTTTTGACGCAAACCAATCGT
GGTGTAGTGGGTGTCTTGCGTCCCCGTTTTCGCACTGCCACAAAGATGGC
ACAGCATAGGTGACGAACATCATGTTCGTCGTTGTGACTACCGAACGTTG
GTGGAGCTGCGTTTTTTTACCATCCTGTCCATCCAAAGTAGAGCACGACG
TGTGTGAGTGCATTTGTATGCAGACTAGCATGTCCATTTATACGCACCCT
AACGTCGCCCTCACCGCCTAACCTTTATGACAGACATGCCGCTGACTTTA
CTTAGTTTTTGATCATAAGTATCTAAACCTTTTCCTCCCCGCACCACCAC
CACATGAGCGCAGAGGCCAACGTGCTTTGAGCCCTTCACATTGAGCATAC
GCCTGAACTGTCAGTCATCTACAAAGCCTTCAACGGACATCATGAACGCT
GATGATGCGCAGTCTATCTTCGTGCGTAACTTGCCATTTAGCGCCACGAC
TGGGGACTTGGAAGAACTGTGCGGTGGTATTGGACCTGTGAAACGTGCAT
CCATCATCCAAACAGCGGACGGTGAGTCACGGGGCTTTGGATTCGTTAAA
TTTGCGATCCCTGAAGATGCCGTGCGTGCGGCCGCCATTTTGGCCAGCAC
CGACTTTAAGGGACGCATTATCTCCGTGGAGTTGGCAGTAAAGCGTGGCC
AGAAGCCTGCTCATGCGCCGCTGGTTTCAACGGCCAAACGAGGTAAGGGC
AAGGACAGCAAACAAGCGGCTTCCTCCTTCTCTTCCTCCTCCTTGTCACC
CTCAACGGAAAAGGATGACAGAGAGGAAGGGGAGGACGACCGCAACGAGC
ATAACAAGGCAGAGTCCGCTGTATCTGAAGTAACGGTTCAGCTGACAGCA
AGTAAGGCGAGTTCAAACACTACCAATACCAACAAGCGGGGAAAAGCGGC
GGCTGCCGCAGCCGCTTCGACCGCTGCGTTGACGACCTCAACGTCGGTGA
AGAAGAAGCCGGGCCATGCATTGTTATCATCCCAGCCGTCCAAGACCCTC
ATTGTATTTAACTTGTCGTCCCAGACCACCGAGAAGCAGCTTTATAAGCG
CGTCAAGAAGATCGAGACCCCAAAATCCATCAAAACCGAGCTCATGGACG
GTTTATCGCGCGTCGCCATCTTAGTTTTCGACTCACCTGCAGCAGCGAAG
AAGGTGCAGAAGAAGCTAGACCAGCATACCATCCACGGCCAAAAGATATC
CTTGCGCCCATTTCATCCCGCAGGGGATAAAGGCGCCACCACCGGAGGGG
TCACCGCTGTTACCCCGGGGAGCATTTTGGACCTAAGCCAGATGCGCGGG
CAGGCAAAACGCAACAACCGTCTCATCATCCGCAATCTCAGTTTCAAGGC
CACAGAAGCAGATCTCAAGGATGCCTTGTCTGCTTTCGGCCCGGTTTTGG
AAGCAAGCATCCCCCGGGTCAAAGTACGTGGAGTAGAAGGTCGGCGTGGT
TTCGGGTTCGTGACATTCGCTTGTGTCGAGGATGCGCAGAAGGCGGTGAA
GTATGTGGGGGGGTTGAAAGTGCGAGGACGGGAAGTGGCTGTAGACATGT
GCATGGGGAGGCAGGAATACCAACAAGACAAGCATAAGAAGATGGCCGAG
GGGGGAGCAAGCATGAATGAGGAAGACACAGCTGACACCGAGAGCGCGTC
AGTCGTGGAAGAAGAAATGTCCATCTCAGACAACGGAGCATTAGACGGAG
AAATCGAGGCCTGTGAAGGACGCGCTAAGGACGAAGAGGGTGGGCTTGTG
GACGAGGGCGAGGATGCTGACGAGGACGAGGACGAGGACAAGGATACATC
GGGTGAAAAGGGAAAGGGGGAGGGTGACGAGGACGAGGACCAAGCCAAGA
TTGCGGCCCCTAAGCCTTCCGATGTGAACGAGGGAAAGACTGTGTTTCTG
CGCAATATTCCGTTCGACGCGACTTCCGATTCATTGAAGATGGCCTTTCA
CGATTATGCTCCCGTTGCCTTTGCTATCATCGTGAAGGATCGCGCGACAG
GCATGTCCAAGGGTACCGCTTTTGTGAAATTTAAGAGTACACAAGGCATG
GATCTTGTCCTTGATGCGGCAGCTGCGGCAGGGGGGTCGCTCACGTTGCT
GGGAAGGGAGTTGAAGGTAGACCGGGCGATGGAGAAGGAAGATGCCCCGC
AGGCAAGAGAGCCAGGAAGTCGCCTTGATAGCGACAGCACTTCGAACGAT
TCGTTGAAGAAAATCAAGGCGGACCGACGCAACCTTTATCTTGCAAATGA
AGGCTTGGTGGTAGATTCCGAAGCGCAAGACGAGATTCCCAACAGCGACC
TGGAGAAGCGGAAACGGGAACAAACAGAGAAAAGGACCAAGCTACGCAAC
CCATTTTTCTTCGTCTCACCGACGCGCCTTTCAATTCGCAACCTAAATCG
CACTGTTCTCGACAAGGATCTGCGTGCATTGCTAGTCCAGGCCGTGCGGA
AAGGGTTGGAGGCGGAGAAAGTCACGTCCGACGATCTCAAGATGCATCTC
AGAGCACAAGGCCTTTACGAGCAGGCTTCCGACTCCAACACTTTGATCGT
GTCGGTGCCTCGCCCCCGGGATATCCACGTCAAAGTGAAGGTCATGCGGG
ACTTAGACAAGAAGCCGGAGGATGCCGTGTACCCGTCCAGGGGCTACGGC
TTCGCAGACTTCTCATCGCATACCCACGCATTGGCAGCGCTCCGCCATGT
CAACAATAACCCGGCGTTTAGGTCATACGCCGTCCAAAGTGGCAGTGGGA
AGTGCTCGCGGTTGATCGTGTCGTTTGCCGTGGAGAATCACAAGGCCCTG
CAGAAGAAAATTCTACGCGGAGAGAAGGTCCGGACCGCGGCCGCACCCGA
GGCCATACGGAAGGGAGTGACTTCTGGGAGGGGGAATTGCATTCGAAAGA
AAAGGAATCTGGACGAGAAGCAAGATGGGAATGAGGACGGGACTGGGACC
GACGGTTTGTCGGACGGGGGGTCCGCAGACATAGGGGAGAAGAAATTGAG
CCGTGGCCAACGCCAGCGGGAGCTAAAGCGACAACGAAAGAGTTCCGGGG
GCGATGAGGGGTCCGCTCGCCGCACAAGAACAGAAATTATCTTCATGGAG
AAGCCGAGCAGCGCTGCGGTGGACCACCGCCGAGAGAAGAGGACGTTGAC
CTCTGCGCTGGGAGACGAAAAGCCAGCAAGAAGCCCCCCGCAGCATATGG
CATTCAGGAGTAGATCCCGAGGTCGAGGGCGTATGGAAGAGCATGGAGAA
GATGAATTGACCCGCTTATCGGCTGGTGCGACGACGACGGATACGAAAAT
GGGGAGACGCAAGTCTGGCGTGCAAAAGGAGAGCAATGAGGACAAGCAGT
TTGTGCAGACAGTCAATGCGTACAAGCAGAAGCTCCTGGGAAGAGGAGCT
GTAGTGGCGGCAGGGGCAGAAGTGGGCGTAAAGGCATTGAATGAAAAGAG
GGAGGGAAAAGGCGATCGTTGGTTTGTGTAAGGGGATGGACCGACCACTG
AACAACAACGTAAAACAAACAAAAAAACAAACAAAAGAATTAGTCGGA

protein sequence of NO15G01170.1

>NO15G01170.1-protein ID=NO15G01170.1-protein|Name=NO15G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1030bp
MNADDAQSIFVRNLPFSATTGDLEELCGGIGPVKRASIIQTADGESRGFG
FVKFAIPEDAVRAAAILASTDFKGRIISVELAVKRGQKPAHAPLVSTAKR
GKGKDSKQAASSFSSSSLSPSTEKDDREEGEDDRNEHNKAESAVSEVTVQ
LTASKASSNTTNTNKRGKAAAAAAASTAALTTSTSVKKKPGHALLSSQPS
KTLIVFNLSSQTTEKQLYKRVKKIETPKSIKTELMDGLSRVAILVFDSPA
AAKKVQKKLDQHTIHGQKISLRPFHPAGDKGATTGGVTAVTPGSILDLSQ
MRGQAKRNNRLIIRNLSFKATEADLKDALSAFGPVLEASIPRVKVRGVEG
RRGFGFVTFACVEDAQKAVKYVGGLKVRGREVAVDMCMGRQEYQQDKHKK
MAEGGASMNEEDTADTESASVVEEEMSISDNGALDGEIEACEGRAKDEEG
GLVDEGEDADEDEDEDKDTSGEKGKGEGDEDEDQAKIAAPKPSDVNEGKT
VFLRNIPFDATSDSLKMAFHDYAPVAFAIIVKDRATGMSKGTAFVKFKST
QGMDLVLDAAAAAGGSLTLLGRELKVDRAMEKEDAPQAREPGSRLDSDST
SNDSLKKIKADRRNLYLANEGLVVDSEAQDEIPNSDLEKRKREQTEKRTK
LRNPFFFVSPTRLSIRNLNRTVLDKDLRALLVQAVRKGLEAEKVTSDDLK
MHLRAQGLYEQASDSNTLIVSVPRPRDIHVKVKVMRDLDKKPEDAVYPSR
GYGFADFSSHTHALAALRHVNNNPAFRSYAVQSGSGKCSRLIVSFAVENH
KALQKKILRGEKVRTAAAPEAIRKGVTSGRGNCIRKKRNLDEKQDGNEDG
TGTDGLSDGGSADIGEKKLSRGQRQRELKRQRKSSGGDEGSARRTRTEII
FMEKPSSAAVDHRREKRTLTSALGDEKPARSPPQHMAFRSRSRGRGRMEE
HGEDELTRLSAGATTTDTKMGRRKSGVQKESNEDKQFVQTVNAYKQKLLG
RGAVVAAGAEVGVKALNEKREGKGDRWFV*

mRNA from alignment at chr15:333900..338584-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G01170.1 ID=NO15G01170.1|Name=NO15G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=4685bp|location=Sequence derived from alignment at chr15:333900..338584- (Nannochloropsis oceanica)
CCCAAAATGCGGTAATAAGATCCAATAAGACGTTCGCTGCAAAATCGTGC
CAAGCCAACGCAATCTTGCTTTAGACATTCGCTGTCGATATTCAAATCAG
CCAAAGCTGGTGCCAAGCCGCCTTACCTCCCCTATAACATTCTAAAATGT
CTCCGTCCACGTCTATCACGAACCGCTATCTTGCATTAGACTTTTGCTGT
CGATACGCTCAAATCAGCCAAAGCTGGTTCTTTTGACGCAAACCAATCGT
GGTGTAGTGGGTGTCTTGCGTCCCCGTTTTCGCACTGCCACAAAGATGGC
ACAGCATAGGTGACGAACATCATGTTCGTCGTTGTGACTACCGAACGTTG
GTGGAGCTGCGTTTTTTTACCATCCTGTCCATCCAAAGTAGAGCACGACG
TGTGTGAGTGCATTTGTATGCAGACTAGCATGTCCATTTATACGCACCCT
AACGTCGCCCTCACCGCCTAACCTTTATGACAGACATGCCGCTGACTTTA
CTTAGTTTTTGATCATAAGTATCTAAACCTTTTCCTCCCCGCACCACCAC
CACATGAGCGCAGAGGCCAACGTGCTTTGAGCCCTTCACATTGAGCATAC
GCCTGAACTGTCAGTCATCTACAAAGCCTTCAACGGACATCATGAACGCT
GATGATGCGCAGTAAGTACCGACCCTCGACTGTAGCCAGTCAACCCCCCC
TGGACCCATCCCAGCCCCCCCTCTTCGCCTGAATGTCACTTGGGCTGTAT
TTCCTTTCCATTTCCCTGGCATAGATACAAAATCCTGTCAAGCACAATTT
GCTTTCGGCGTAAATATATTTTGTCAATTTCACATGGCTCTGCGTGTCTG
TCCTAATTAATGACACCCCCTGTCCTCTCCGCCTTGATCTCCTCCCCCTC
CTCCCCCAATCAGGTCTATCTTCGTGCGTAACTTGCCATTTAGCGCCACG
ACTGGGGACTTGGAAGAACTGTGCGGTGGTATTGGACCTGTGAAACGTGC
ATCCATCATCCAAACAGCGGACGGTGAGTCACGGGGCTTTGGATTCGTTA
AATTTGCGATCCCTGAAGATGCCGTGCGTGCGGCCGCCATTTTGGCCAGC
ACCGACTTTAAGGGACGCATTATCTCCGTGGAGTTGGCAGTAAAGCGTGG
CCAGAAGCCTGCTCATGCGCCGCTGGTTTCAACGGCCAAACGAGGTAAGG
GCAAGGACAGCAAACAAGCGGCTTCCTCCTTCTCTTCCTCCTCCTTGTCA
CCCTCAACGGAAAAGGATGACAGAGAGGAAGGGGAGGACGACCGCAACGA
GCATAACAAGGCAGAGTCCGCTGTATCTGAAGTAACGGTTCAGCTGACAG
CAAGTAAGGCGAGTTCAAACACTACCAATACCAACAAGCGGGGAAAAGCG
GCGGCTGCCGCAGCCGCTTCGACCGCTGCGTTGACGACCTCAACGTCGGT
GAAGAAGAAGCCGGGCCATGCATTGTTATCATCCCAGCCGTCCAAGACCC
TCATTGTATTTAACTTGTCGTCCCAGACCACCGAGAAGCAGCTTTATAAG
CGCGTCAAGAAGATCGAGACCCCAAAATCCATCAAAACCGAGGTGCGTTT
TCTGGTTTTTAGGCCACCCAAGGCGACCTCATGTGAGCATAGACCCCAGA
CGCGCCCTCAAAGCACGCAAACACACCAAAGTGAATTCGTCAGTGTCCCT
ATAGATATACTGACTAGTATACATCACATCCTCAATTCTCCATCCATGAT
CCCTTGCATCGCCAGCTCATGGACGGTTTATCGCGCGTCGCCATCTTAGT
TTTCGACTCACCTGCAGCAGCGAAGAAGGTGCAGAAGAAGCTAGACCAGC
ATACCATCCACGGCCAAAAGATATCCTTGCGCCCATTTCATCCCGCAGGG
GATAAAGGCGCCACCACCGGAGGGGTCACCGCTGTTACCCCGGGGAGCAT
TTTGGACCTAAGCCAGATGCGCGGGCAGGCAAAACGCAACAACCGTCTCA
TCATCCGCAATCTCAGTTTCAAGGCCACAGAAGCAGATCTCAAGGTGAAC
CTTTAAAGTTTGATGTCTGATTATACACCAATTAAATGTGACGATCAATT
TTGCACCAAACTTCCACCTCACACAGGATGCCTTGTCTGCTTTCGGCCCG
GTTTTGGAAGCAAGCATCCCCCGGGTCAAAGTACGTGGAGTAGAAGGTCG
GCGTGGTTTCGGGTTCGTGACATTCGCTTGTGTCGAGGATGCGCAGAAGG
CGGTGAAGTATGTGGGGGGGTTGAAAGTGCGAGGACGGGAAGTGGCTGTA
GACATGTGCATGGGGAGGCAGGAATACCAACAAGACAAGCATAAGAAGAT
GGCCGAGGGGGGAGCAAGCATGAATGAGGAAGACACAGCTGACACCGAGA
GCGCGTCAGTCGTGGAAGAAGAAATGTCCATCTCAGACAACGGAGCATTA
GACGGAGAAATCGAGGCCTGTGAAGGACGCGCTAAGGACGAAGAGGGTAA
GCATCAGGGTTGATGTGGTGGGCTCTTTGTAAGGAATGCGCAGCAGAGAA
TCTGTTGTCACGTATTTATCCCTTTTCATTCTCACCCATATGAAGGTGGG
CTTGTGGACGAGGGCGAGGATGCTGACGAGGACGAGGACGAGGACAAGGA
TACATCGGGTGAAAAGGGAAAGGGGGAGGGTGACGAGGACGAGGACCAAG
CCAAGATTGCGGCCCCTAAGCCTTCCGATGTGAACGAGGGAAAGACTGTG
TTTCTGCGCAATATTCCGTTCGACGCGACTTCCGATTCATTGAAGATGGC
CTTTCACGATTATGCTCCCGTTGCCTTTGCTATCATCGTGAAGGATCGCG
CGACAGGCATGTCCAAGGGTACCGCTTTTGTGAAATTTAAGGTATGCGCT
TCAAGATGGAATTAAACATGGCAAGATATCAATTGGCAGACAAACACGTA
TTACACAAATTCTCATCCTTCCGTCCTTTTGAATACATAGAGTACACAAG
GCATGGATCTTGTCCTTGATGCGGCAGCTGCGGCAGGGGGGTCGCTCACG
TTGCTGGGAAGGGAGTTGAAGGTAGACCGGGCGATGGAGAAGGAAGATGC
CCCGCAGGCAAGAGAGCCAGGAAGTCGCCTTGATAGCGACAGCACTTCGA
ACGATTCGTTGAAGAAAATCAAGGCGGACCGACGCAACCTTTATCTTGCA
AATGAAGGCTTGGTGGTAGATTCCGAAGCGCAAGACGAGGTATGATTCTC
CCCCAAATCTATTTTGTGAGAAGACATCTACTTGTATTTTTGTCCATTCT
GTTGATATTCAATATTTTCTTGAATCTAAGTGTTCTCGCAAACTTGTGCT
GGGTTCAATGATGAAGACATAGGTGGACATCTGAGCACCTTTCCTTCATT
TATTTCTACTCTCCGCCGTAGATTCCCAACAGCGACCTGGAGAAGCGGAA
ACGGGAACAAACAGAGAAAAGGACCAAGCTACGCAACCCATTTTTCTTCG
TCTCACCGACGCGCCTTTCAATTCGCAACCTAAATCGCACTGTTCTCGAC
AAGGATCTGCGTGCATTGCTAGTCCAGGCCGTGCGGAAAGGGTTGGAGGC
GGAGAAAGTCACGTCCGACGATCTCAAGATGCATCTCAGAGCACAAGGCC
TTTACGAGCAGGCTTCCGACTCCAACACTTTGATCGTGTCGGTGCCTCGC
CCCCGGGATATCCACGTCAAAGTGAAGGTCATGCGGGACTTAGACAAGAA
GCCGGAGGATGCCGTGTACCCGTCCAGGGGCTACGGCTTCGCAGACTTCT
CATCGCATACCCACGCATTGGCAGCGCTCCGCCATGTCAACAATAACCCG
GCGTTTAGGTCATACGCCGTCCAAAGTGGCAGTGGGAAGTGCTCGCGGTT
GATCGTGTCGTTTGCCGTGGAGAATCACAAGGCCCTGCAGAAGAAAATTC
TACGCGGAGAGAAGGTCCGGACCGCGGCCGCACCCGAGGCCATACGGAAG
GGAGTGACTTCTGGGAGGGGGAATTGCATTCGAAAGAAAAGGAATCTGGA
CGAGAAGCAAGATGGGAATGAGGACGGGACTGGGACCGACGGTTTGTCGG
ACGGGGGGTCCGCAGACATAGGGGAGAAGAAATTGAGCCGTGGCCAACGC
CAGCGGGAGCTAAAGCGACAACGAAAGAGTTCCGGGGGCGATGAGGGGTC
CGCTCGCCGCACAAGAACAGAAATTATCTTCATGGAGAAGCCGAGCAGCG
CTGCGGTGGACCACCGCCGAGAGAAGAGGACGTTGACCTCTGCGCTGGGA
GACGAAAAGCCAGCAAGAAGCCCCCCGCAGCATATGGCATTCAGGAGTAG
ATCCCGAGGTCGAGGGCGTATGGAAGAGCATGGAGAAGATGAATTGACCC
GCTTATCGGCTGGTGCGACGACGACGGATACGAAAATGGGGAGACGCAAG
TCTGGCGTGCAAAAGGAGAGCAATGAGGACAAGCAGTTTGTGCAGACAGT
CAATGCGTACAAGCAGAAGCTCCTGGGAAGAGGAGCTGTAGTGGCGGCAG
GGGCAGAAGTGGGCGTAAAGGCATTGAATGAAAAGAGGGAGGGAAAAGGC
GATCGTTGGTTTGTGTAAGGGGATGGACCGACCACTGAACAACAACGTAA
AACAAACAAAAAAACAAACAAAAGAATTAGTCGGA

Coding sequence (CDS) from alignment at chr15:333900..338584-

>NO15G01170.1 ID=NO15G01170.1|Name=NO15G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=3090bp|location=Sequence derived from alignment at chr15:333900..338584- (Nannochloropsis oceanica)
ATGAACGCTGATGATGCGCAGTCTATCTTCGTGCGTAACTTGCCATTTAG
CGCCACGACTGGGGACTTGGAAGAACTGTGCGGTGGTATTGGACCTGTGA
AACGTGCATCCATCATCCAAACAGCGGACGGTGAGTCACGGGGCTTTGGA
TTCGTTAAATTTGCGATCCCTGAAGATGCCGTGCGTGCGGCCGCCATTTT
GGCCAGCACCGACTTTAAGGGACGCATTATCTCCGTGGAGTTGGCAGTAA
AGCGTGGCCAGAAGCCTGCTCATGCGCCGCTGGTTTCAACGGCCAAACGA
GGTAAGGGCAAGGACAGCAAACAAGCGGCTTCCTCCTTCTCTTCCTCCTC
CTTGTCACCCTCAACGGAAAAGGATGACAGAGAGGAAGGGGAGGACGACC
GCAACGAGCATAACAAGGCAGAGTCCGCTGTATCTGAAGTAACGGTTCAG
CTGACAGCAAGTAAGGCGAGTTCAAACACTACCAATACCAACAAGCGGGG
AAAAGCGGCGGCTGCCGCAGCCGCTTCGACCGCTGCGTTGACGACCTCAA
CGTCGGTGAAGAAGAAGCCGGGCCATGCATTGTTATCATCCCAGCCGTCC
AAGACCCTCATTGTATTTAACTTGTCGTCCCAGACCACCGAGAAGCAGCT
TTATAAGCGCGTCAAGAAGATCGAGACCCCAAAATCCATCAAAACCGAGC
TCATGGACGGTTTATCGCGCGTCGCCATCTTAGTTTTCGACTCACCTGCA
GCAGCGAAGAAGGTGCAGAAGAAGCTAGACCAGCATACCATCCACGGCCA
AAAGATATCCTTGCGCCCATTTCATCCCGCAGGGGATAAAGGCGCCACCA
CCGGAGGGGTCACCGCTGTTACCCCGGGGAGCATTTTGGACCTAAGCCAG
ATGCGCGGGCAGGCAAAACGCAACAACCGTCTCATCATCCGCAATCTCAG
TTTCAAGGCCACAGAAGCAGATCTCAAGGATGCCTTGTCTGCTTTCGGCC
CGGTTTTGGAAGCAAGCATCCCCCGGGTCAAAGTACGTGGAGTAGAAGGT
CGGCGTGGTTTCGGGTTCGTGACATTCGCTTGTGTCGAGGATGCGCAGAA
GGCGGTGAAGTATGTGGGGGGGTTGAAAGTGCGAGGACGGGAAGTGGCTG
TAGACATGTGCATGGGGAGGCAGGAATACCAACAAGACAAGCATAAGAAG
ATGGCCGAGGGGGGAGCAAGCATGAATGAGGAAGACACAGCTGACACCGA
GAGCGCGTCAGTCGTGGAAGAAGAAATGTCCATCTCAGACAACGGAGCAT
TAGACGGAGAAATCGAGGCCTGTGAAGGACGCGCTAAGGACGAAGAGGGT
GGGCTTGTGGACGAGGGCGAGGATGCTGACGAGGACGAGGACGAGGACAA
GGATACATCGGGTGAAAAGGGAAAGGGGGAGGGTGACGAGGACGAGGACC
AAGCCAAGATTGCGGCCCCTAAGCCTTCCGATGTGAACGAGGGAAAGACT
GTGTTTCTGCGCAATATTCCGTTCGACGCGACTTCCGATTCATTGAAGAT
GGCCTTTCACGATTATGCTCCCGTTGCCTTTGCTATCATCGTGAAGGATC
GCGCGACAGGCATGTCCAAGGGTACCGCTTTTGTGAAATTTAAGAGTACA
CAAGGCATGGATCTTGTCCTTGATGCGGCAGCTGCGGCAGGGGGGTCGCT
CACGTTGCTGGGAAGGGAGTTGAAGGTAGACCGGGCGATGGAGAAGGAAG
ATGCCCCGCAGGCAAGAGAGCCAGGAAGTCGCCTTGATAGCGACAGCACT
TCGAACGATTCGTTGAAGAAAATCAAGGCGGACCGACGCAACCTTTATCT
TGCAAATGAAGGCTTGGTGGTAGATTCCGAAGCGCAAGACGAGATTCCCA
ACAGCGACCTGGAGAAGCGGAAACGGGAACAAACAGAGAAAAGGACCAAG
CTACGCAACCCATTTTTCTTCGTCTCACCGACGCGCCTTTCAATTCGCAA
CCTAAATCGCACTGTTCTCGACAAGGATCTGCGTGCATTGCTAGTCCAGG
CCGTGCGGAAAGGGTTGGAGGCGGAGAAAGTCACGTCCGACGATCTCAAG
ATGCATCTCAGAGCACAAGGCCTTTACGAGCAGGCTTCCGACTCCAACAC
TTTGATCGTGTCGGTGCCTCGCCCCCGGGATATCCACGTCAAAGTGAAGG
TCATGCGGGACTTAGACAAGAAGCCGGAGGATGCCGTGTACCCGTCCAGG
GGCTACGGCTTCGCAGACTTCTCATCGCATACCCACGCATTGGCAGCGCT
CCGCCATGTCAACAATAACCCGGCGTTTAGGTCATACGCCGTCCAAAGTG
GCAGTGGGAAGTGCTCGCGGTTGATCGTGTCGTTTGCCGTGGAGAATCAC
AAGGCCCTGCAGAAGAAAATTCTACGCGGAGAGAAGGTCCGGACCGCGGC
CGCACCCGAGGCCATACGGAAGGGAGTGACTTCTGGGAGGGGGAATTGCA
TTCGAAAGAAAAGGAATCTGGACGAGAAGCAAGATGGGAATGAGGACGGG
ACTGGGACCGACGGTTTGTCGGACGGGGGGTCCGCAGACATAGGGGAGAA
GAAATTGAGCCGTGGCCAACGCCAGCGGGAGCTAAAGCGACAACGAAAGA
GTTCCGGGGGCGATGAGGGGTCCGCTCGCCGCACAAGAACAGAAATTATC
TTCATGGAGAAGCCGAGCAGCGCTGCGGTGGACCACCGCCGAGAGAAGAG
GACGTTGACCTCTGCGCTGGGAGACGAAAAGCCAGCAAGAAGCCCCCCGC
AGCATATGGCATTCAGGAGTAGATCCCGAGGTCGAGGGCGTATGGAAGAG
CATGGAGAAGATGAATTGACCCGCTTATCGGCTGGTGCGACGACGACGGA
TACGAAAATGGGGAGACGCAAGTCTGGCGTGCAAAAGGAGAGCAATGAGG
ACAAGCAGTTTGTGCAGACAGTCAATGCGTACAAGCAGAAGCTCCTGGGA
AGAGGAGCTGTAGTGGCGGCAGGGGCAGAAGTGGGCGTAAAGGCATTGAA
TGAAAAGAGGGAGGGAAAAGGCGATCGTTGGTTTGTGTAA

Synonyms

Publications