NO15G00410.2, NO15G00410.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00410.2
Unique NameNO15G00410.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2148
Alignment locationchr15:141882..144317 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:141882..144317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00410.2 vs.
Match: EWM20787.1 (hypothetical protein Naga_100423g2 [Nannochloropsis gaditana])

HSP 1 Score: 642.1 bits (1655), Expect = 1.400e-180
Identity = 324/488 (66.39%), Postives = 369/488 (75.61%), Query Frame = 0 
Query:   10 CLWLLYALVAPQAYGLQTTKCDTTEAERARYTLKALKQLEDTYEILPGSLSFPDFAQPAGRYGLVAFDGQEINPPALCAITSGVNTPYGPGLCNFSFVLGPRDAVVGLFCTPPPVKYFSLRSYTGFRFRPQAWLPAVELADPDNNLTFNTTGKASGIMWREG-CIRGDMGKRAVTKKEG-VEDDESPFCKTALFVSTADGATAREAHEAFRSAGWPEAAMNLDVVSAEKAYFRNFRLPWVVDRSDAFVINFRVSQPLNRTAVEPYYFSSYPFYMLRHKSTLPSLRPVQQQRELGKEQQHKQ----------HQQEDHHHRYLQQDDLVNQPREPLTTPPLRPRGTGDDEEYLLPSLAALEDSVISYMDKSRGAKLHARWEMEHVLPDTGRCLTEPDYYPIAENVKAWNLSGIATCGFFSRDCLYSFLALPDTGKIDYADITFPRNRSFVFVGANQVRLQKVTYSNIFMTSILEPQKPGRTVNYSADAL 486
            C  LL  +   QAY  QTTKCDTTEAERA    + L+ LE+ YE LPGSLSFP FAQPAGRYGLVAFDG+ +NPPALC ITS V+TPYGPGLCN+SFVLGPRDAVVGLFCTPPPVKYFSLRSYTGFRFRPQAWLPAVELADPDNNLTFNTTG+      REG  ++G        K+EG  E D +PFC+TA FVST DG TAR+   A  +AGW   A NLDVVSAEKAYFR+ R PW +DRSDAFVIN+RVSQP++  AV PY+ SSYPFYMLRH+   P +      RELG                 +     +  +L   +  N PREPLTTPPLRPRGTG DE YLLP+LA LE++V +YM +SRGA LHARWEMEH+LPDT RCLTEPDY+PIA +V  WNL+G ATCGFFSRDCLY+FL+ P TGK+DY D+TFPRNRSFVF+GANQV L+KVTYSNIFMT+  EPQK GRTVN+SA AL
Sbjct:   10 CFLLLNVISGFQAYARQTTKCDTTEAERAEVMRRTLESLENEYEFLPGSLSFPPFAQPAGRYGLVAFDGKVVNPPALCEITSRVDTPYGPGLCNYSFVLGPRDAVVGLFCTPPPVKYFSLRSYTGFRFRPQAWLPAVELADPDNNLTFNTTGRLP----REGPYLQG--------KREGSAESDAAPFCRTAAFVSTGDGVTARDVRRALANAGWAATATNLDVVSAEKAYFRDVRRPWAIDRSDAFVINYRVSQPIDSAAVAPYFASSYPFYMLRHR---PEVSSATSNRELGNASGAPAQATLPTSGYLNMAPGGNLGHLPDIEDENAPREPLTTPPLRPRGTGQDESYLLPTLARLEEAVTAYMGRSRGAVLHARWEMEHILPDTQRCLTEPDYFPIAASVPEWNLTGFATCGFFSRDCLYTFLSPPTTGKVDYGDLTFPRNRSFVFLGANQVGLEKVTYSNIFMTATAEPQKQGRTVNFSAQAL 482
The following BLAST results are available for this feature:
BLAST of NO15G00410.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20787.11.400e-18066.39hypothetical protein Naga_100423g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00410NO15G00410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00410.2NO15G00410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00410.2.cds1NO15G00410.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00410.2.cds2NO15G00410.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00410.2.cds3NO15G00410.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00410.2 ID=NO15G00410.2|Name=NO15G00410.2|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp
ATAGAATGGGCAAGATGCAAGTCCTCCCATTGTGCCTGTGGCTCCTTTAC
GCGTTGGTAGCTCCTCAAGCGTACGGCTTGCAGACCACGAAATGCGACAC
GACCGAGGCGGAAAGGGCGCGTTACACACTCAAGGCACTGAAGCAGCTGG
AAGACACCTACGAGATTTTACCAGGCTCGCTCTCCTTCCCAGATTTTGCG
CAGCCGGCGGGACGATATGGATTAGTGGCGTTTGACGGCCAGGAGATAAA
CCCTCCAGCCCTGTGCGCTATCACCTCCGGCGTCAACACACCCTACGGAC
CAGGCCTCTGCAATTTCTCATTTGTCCTCGGCCCGCGTGATGCTGTCGTT
GGTCTTTTCTGCACACCCCCACCTGTCAAGTACTTTTCCCTTCGTTCCTA
CACGGGCTTCCGTTTCCGGCCCCAAGCCTGGCTCCCAGCCGTTGAACTCG
CCGATCCCGACAACAACCTGACATTTAATACAACGGGCAAGGCATCCGGA
ATTATGTGGAGGGAGGGATGTATACGTGGAGATATGGGAAAGAGGGCAGT
CACGAAGAAAGAGGGGGTGGAGGACGATGAGTCACCATTCTGCAAAACTG
CCTTGTTTGTAAGCACTGCAGACGGGGCCACGGCACGGGAGGCTCACGAA
GCGTTTCGGTCTGCAGGATGGCCGGAGGCGGCCATGAACTTAGACGTGGT
GTCGGCAGAAAAGGCATACTTTCGTAACTTTCGCTTGCCATGGGTCGTGG
ATAGAAGCGATGCGTTCGTGATTAACTTCCGTGTGTCCCAGCCGTTGAAT
CGAACTGCCGTCGAGCCCTACTACTTCTCGTCTTATCCCTTTTACATGCT
GCGGCACAAGTCTACCCTTCCTTCTCTCCGTCCAGTACAGCAGCAGCGCG
AGCTGGGGAAAGAGCAGCAGCACAAGCAGCACCAGCAGGAGGACCACCAC
CACCGCTACCTCCAGCAGGACGATCTCGTTAACCAGCCCCGCGAGCCTCT
CACCACCCCTCCTCTTCGTCCACGTGGTACGGGTGACGACGAAGAGTACC
TACTTCCATCGTTAGCCGCGCTGGAGGACTCGGTCATTTCATACATGGAC
AAAAGTCGAGGAGCGAAGCTGCATGCGCGCTGGGAAATGGAGCATGTGTT
GCCGGATACGGGACGGTGCCTTACTGAGCCGGACTACTACCCGATAGCGG
AGAATGTAAAGGCGTGGAATCTCTCTGGGATCGCTACCTGCGGCTTTTTC
TCTCGCGACTGCCTCTACAGCTTCCTCGCCCTCCCGGATACGGGCAAAAT
TGACTACGCAGACATCACCTTCCCGCGAAACCGCTCTTTCGTCTTCGTGG
GTGCCAATCAAGTGCGTTTGCAAAAAGTCACCTACTCCAACATTTTCATG
ACATCCATTTTGGAGCCTCAGAAACCGGGGCGCACTGTTAATTACAGCGC
TGACGCATTGGGTATGTCTGAAACTTTGTCGGTATCTAGATACTTTCCTT
AGTCCCTTGCTGTTTTTCAGTCATATGGCTTCTTGTCCCTCTTGTCTGGC
CTACATCATCCGTCAAGTGTTTGTTGCCGCTTTCATTCCAGACATTGGGG
AATCATCGCACTGATCCTCTACCTCCTTTTCATCAATCCCTCTCCCTCCC
ACCTAACCCCAACCTTCCTTCTCCTACTACAGAGGGCAGTGCCAATTGGT
ACCTCCCAGCCTTGCCTGATGCCAACGACTTGTACGCAGTCACGCTCACC
CGTGACGCCTGTGATCGCCGACCTCCTCCATCTGGAGAGAGGGAGGGAGG
GGGAAACGAAGGGGTTAAGGAGCCGTTTTGTACGACCGTGGGGGAAAAGG
TGTTAAGCTATGAAGAATTCGTGTACGTGGTGGAAAGAAAGTACTTGCAG
CCCGCGACCATGATCGGCCCGAATCCTGATGAGGTTCTAGCCCCTATAGT
TCTCGTGTTTGAGACTCCGGAGGATACTGTACCGGGACCATGGATGAGTG
AGGGTGAAGAAAAGGGTGCTGTTGCCGAAGTGTAAATACCACTATCTCGT
ATGATACGGCACGGTGATAGACGGTTATAAGATTATGACGAACGAGTCGG
AGAACTCCATAAAGAGCAATTTTATAACTCTCTTCCTCTCCGTTGATA
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protein sequence of NO15G00410.2

>NO15G00410.2-protein ID=NO15G00410.2-protein|Name=NO15G00410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MGKMQVLPLCLWLLYALVAPQAYGLQTTKCDTTEAERARYTLKALKQLED
TYEILPGSLSFPDFAQPAGRYGLVAFDGQEINPPALCAITSGVNTPYGPG
LCNFSFVLGPRDAVVGLFCTPPPVKYFSLRSYTGFRFRPQAWLPAVELAD
PDNNLTFNTTGKASGIMWREGCIRGDMGKRAVTKKEGVEDDESPFCKTAL
FVSTADGATAREAHEAFRSAGWPEAAMNLDVVSAEKAYFRNFRLPWVVDR
SDAFVINFRVSQPLNRTAVEPYYFSSYPFYMLRHKSTLPSLRPVQQQREL
GKEQQHKQHQQEDHHHRYLQQDDLVNQPREPLTTPPLRPRGTGDDEEYLL
PSLAALEDSVISYMDKSRGAKLHARWEMEHVLPDTGRCLTEPDYYPIAEN
VKAWNLSGIATCGFFSRDCLYSFLALPDTGKIDYADITFPRNRSFVFVGA
NQVRLQKVTYSNIFMTSILEPQKPGRTVNYSADALGMSETLSVSRYFP*
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mRNA from alignment at chr15:141882..144317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00410.2 ID=NO15G00410.2|Name=NO15G00410.2|organism=Nannochloropsis oceanica|type=mRNA|length=2436bp|location=Sequence derived from alignment at chr15:141882..144317- (Nannochloropsis oceanica)
ATAGAATGGGCAAGATGCAAGTCCTCCCATTGTGCCTGTGGCTCCTTTAC
GCGTTGGTAGCTCCTCAAGCGTACGGCTTGCAGACCACGAAATGCGACAC
GACCGAGGCGGAAAGGGCGCGTTACACACTCAAGGCACTGAAGCAGCTGG
AAGACACCTACGAGATTTTACCAGGCTCGCTCTCCTTCCCAGATTTTGCG
CAGCCGGCGGGACGATATGGATTAGGTGCGTGGATAGGGGGTCGAGAGTA
TGGGAGACGGGAGATAGGCGTTTTAAGATTAGCAGCTCGTTGACTCGTTT
ATTCCTAATATATATGCACCATCGAACAGTGGCGTTTGACGGCCAGGAGA
TAAACCCTCCAGCCCTGTGCGCTATCACCTCCGGCGTCAACACACCCTAC
GGACCAGGCCTCTGCAATTTCTCATTTGTCCTCGGCCCGCGTGATGCTGT
CGTTGGTCTTTTCTGCACACCCCCACCTGTCAAGTACTTTTCCCTTCGTT
CCTACACGGGCTTCCGTTTCCGGCCCCAAGCCTGGCTCCCAGCCGTTGAA
CTCGCCGATCCCGACAACAACCTGACATTTAATACAACGGGCAAGGCATC
CGGAATTATGTGGAGGGAGGGATGTATACGTGGAGATATGGGAAAGAGGG
CAGTCACGAAGAAAGAGGGGGTGGAGGACGATGAGTCACCATTCTGCAAA
ACTGCCTTGTTTGTAAGCACTGCAGACGGGGCCACGGCACGGGAGGCTCA
CGAAGCGTTTCGGTCTGCAGGATGGCCGGAGGCGGCCATGAACTTAGACG
TGGTGTCGGCAGAAAAGGCATACTTTCGTAACTTTCGCTTGCCATGGGTC
GTGGATAGAAGCGATGCGTTCGTGATTAACTTCCGTGTGTCCCAGCCGTT
GAATCGAACTGCCGTCGAGCCCTACTACTTCTCGTCTTATCCCTTTTACA
TGCTGCGGCACAAGTCTACCCTTCCTTCTCTCCGTCCAGTACAGCAGCAG
CGCGAGCTGGGGAAAGAGCAGCAGCACAAGCAGCACCAGCAGGAGGACCA
CCACCACCGCTACCTCCAGCAGGACGATCTCGTTAACCAGCCCCGCGAGC
CTCTCACCACCCCTCCTCTTCGTCCACGTGGTACGGGTGACGACGAAGAG
TACCTACTTCCATCGTTAGCCGCGCTGGAGGACTCGGTCATTTCATACAT
GGACAAAAGTCGAGGAGCGAAGCTGCATGCGCGCTGGGAAATGGAGCATG
TGTTGCCGGATACGGGACGGTGCCTTACTGAGCCGGACTACTACCCGATA
GCGGAGAATGTAAAGGCGTGGTAAGGAAAGGGGGAGAGAGGGAGGATGGA
AAGGTCACTGGTTGCGTGTGGCACAATATCGAAATTTGATATTATTATTA
TATTTGTGTATCACAGTGTCTATGTACGTGTATATTATGTCTTTTATTTC
ATTGCCTTGAATCTACAAGTTATATCTCTCCTCCTTTCTCCCCTCTCTCC
TCAGGAATCTCTCTGGGATCGCTACCTGCGGCTTTTTCTCTCGCGACTGC
CTCTACAGCTTCCTCGCCCTCCCGGATACGGGCAAAATTGACTACGCAGA
CATCACCTTCCCGCGAAACCGCTCTTTCGTCTTCGTGGGTGCCAATCAAG
TGCGTTTGCAAAAAGTCACCTACTCCAACATTTTCATGACATCCATTTTG
GAGCCTCAGAAACCGGGGCGCACTGTTAATTACAGCGCTGACGCATTGGG
TATGTCTGAAACTTTGTCGGTATCTAGATACTTTCCTTAGTCCCTTGCTG
TTTTTCAGTCATATGGCTTCTTGTCCCTCTTGTCTGGCCTACATCATCCG
TCAAGTGTTTGTTGCCGCTTTCATTCCAGACATTGGGGAATCATCGCACT
GATCCTCTACCTCCTTTTCATCAATCCCTCTCCCTCCCACCTAACCCCAA
CCTTCCTTCTCCTACTACAGAGGGCAGTGCCAATTGGTACCTCCCAGCCT
TGCCTGATGCCAACGACTTGTACGCAGTCACGCTCACCCGTGACGCCTGT
GATCGCCGACCTCCTCCATCTGGAGAGAGGGAGGGAGGGGGAAACGAAGG
GGTTAAGGAGCCGTTTTGTACGACCGTGGGGGAAAAGGTGTTAAGCTATG
AAGAATTCGTGTACGTGGTGGAAAGAAAGTACTTGCAGCCCGCGACCATG
ATCGGCCCGAATCCTGATGAGGTTCTAGCCCCTATAGTTCTCGTGTTTGA
GACTCCGGAGGATACTGTACCGGGACCATGGATGAGTGAGGGTGAAGAAA
AGGGTGCTGTTGCCGAAGTGTAAATACCACTATCTCGTATGATACGGCAC
GGTGATAGACGGTTATAAGATTATGACGAACGAGTCGGAGAACTCCATAA
AGAGCAATTTTATAACTCTCTTCCTCTCCGTTGATA
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Coding sequence (CDS) from alignment at chr15:141882..144317-

>NO15G00410.2 ID=NO15G00410.2|Name=NO15G00410.2|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at chr15:141882..144317- (Nannochloropsis oceanica)
ATGGGCAAGATGCAAGTCCTCCCATTGTGCCTGTGGCTCCTTTACGCGTT
GGTAGCTCCTCAAGCGTACGGCTTGCAGACCACGAAATGCGACACGACCG
AGGCGGAAAGGGCGCGTTACACACTCAAGGCACTGAAGCAGCTGGAAGAC
ACCTACGAGATTTTACCAGGCTCGCTCTCCTTCCCAGATTTTGCGCAGCC
GGCGGGACGATATGGATTAGTGGCGTTTGACGGCCAGGAGATAAACCCTC
CAGCCCTGTGCGCTATCACCTCCGGCGTCAACACACCCTACGGACCAGGC
CTCTGCAATTTCTCATTTGTCCTCGGCCCGCGTGATGCTGTCGTTGGTCT
TTTCTGCACACCCCCACCTGTCAAGTACTTTTCCCTTCGTTCCTACACGG
GCTTCCGTTTCCGGCCCCAAGCCTGGCTCCCAGCCGTTGAACTCGCCGAT
CCCGACAACAACCTGACATTTAATACAACGGGCAAGGCATCCGGAATTAT
GTGGAGGGAGGGATGTATACGTGGAGATATGGGAAAGAGGGCAGTCACGA
AGAAAGAGGGGGTGGAGGACGATGAGTCACCATTCTGCAAAACTGCCTTG
TTTGTAAGCACTGCAGACGGGGCCACGGCACGGGAGGCTCACGAAGCGTT
TCGGTCTGCAGGATGGCCGGAGGCGGCCATGAACTTAGACGTGGTGTCGG
CAGAAAAGGCATACTTTCGTAACTTTCGCTTGCCATGGGTCGTGGATAGA
AGCGATGCGTTCGTGATTAACTTCCGTGTGTCCCAGCCGTTGAATCGAAC
TGCCGTCGAGCCCTACTACTTCTCGTCTTATCCCTTTTACATGCTGCGGC
ACAAGTCTACCCTTCCTTCTCTCCGTCCAGTACAGCAGCAGCGCGAGCTG
GGGAAAGAGCAGCAGCACAAGCAGCACCAGCAGGAGGACCACCACCACCG
CTACCTCCAGCAGGACGATCTCGTTAACCAGCCCCGCGAGCCTCTCACCA
CCCCTCCTCTTCGTCCACGTGGTACGGGTGACGACGAAGAGTACCTACTT
CCATCGTTAGCCGCGCTGGAGGACTCGGTCATTTCATACATGGACAAAAG
TCGAGGAGCGAAGCTGCATGCGCGCTGGGAAATGGAGCATGTGTTGCCGG
ATACGGGACGGTGCCTTACTGAGCCGGACTACTACCCGATAGCGGAGAAT
GTAAAGGCGTGGAATCTCTCTGGGATCGCTACCTGCGGCTTTTTCTCTCG
CGACTGCCTCTACAGCTTCCTCGCCCTCCCGGATACGGGCAAAATTGACT
ACGCAGACATCACCTTCCCGCGAAACCGCTCTTTCGTCTTCGTGGGTGCC
AATCAAGTGCGTTTGCAAAAAGTCACCTACTCCAACATTTTCATGACATC
CATTTTGGAGCCTCAGAAACCGGGGCGCACTGTTAATTACAGCGCTGACG
CATTGGGTATGTCTGAAACTTTGTCGGTATCTAGATACTTTCCTTAG
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Synonyms
Publications