NO15G00410.1, NO15G00410.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO15G00410.1
Unique Name	NO15G00410.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1927
Alignment location	chr15:141882..144317 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr15	genome	chr15:141882..144317 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO15G00410.1 vs.
Match: EWM20787.1 (hypothetical protein Naga_100423g2 [Nannochloropsis gaditana])

HSP 1 Score: 765.4 bits (1975), Expect = 1.300e-217
Identity = 388/587 (66.10%), Postives = 442/587 (75.30%), Query Frame = 0

Query:   10 CLWLLYALVAPQAYGLQTTKCDTTEAERARYTLKALKQLEDTYEILPGSLSFPDFAQPAGRYGLVAFDGQEINPPALCAITSGVNTPYGPGLCNFSFVLGPRDAVVGLFCTPPPVKYFSLRSYTGFRFRPQAWLPAVELADPDNNLTFNTTGKASGIMWREG-CIRGDMGKRAVTKKEG-VEDDESPFCKTALFVSTADGATAREAHEAFRSAGWPEAAMNLDVVSAEKAYFRNFRLPWVVDRSDAFVINFRVSQPLNRTAVEPYYFSSYPFYMLRHKSTLPSLRPVQQQRELGKEQQHKQ----------HQQEDHHHRYLQQDDLVNQPREPLTTPPLRPRGTGDDEEYLLPSLAALEDSVISYMDKSRGAKLHARWEMEHVLPDTGRCLTEPDYYPIAENVKAWNLSGIATCGFFSRDCLYSFLALPDTGKIDYADITFPRNRSFVFVGANQVRLQKVTYSNIFMTSILEPQKPGRTVNYSADALEGSANWYLPALPDANDLYAVTLTRDACDRRPPPSGEREGGGNEGVKEPFCTTVGEKVLSYEEFVYVVERKYLQPATMIGPNPDEVLAPIVLVFETPEDT 585
            C  LL  +   QAY  QTTKCDTTEAERA    + L+ LE+ YE LPGSLSFP FAQPAGRYGLVAFDG+ +NPPALC ITS V+TPYGPGLCN+SFVLGPRDAVVGLFCTPPPVKYFSLRSYTGFRFRPQAWLPAVELADPDNNLTFNTTG+      REG  ++G        K+EG  E D +PFC+TA FVST DG TAR+   A  +AGW   A NLDVVSAEKAYFR+ R PW +DRSDAFVIN+RVSQP++  AV PY+ SSYPFYMLRH+   P +      RELG                 +     +  +L   +  N PREPLTTPPLRPRGTG DE YLLP+LA LE++V +YM +SRGA LHARWEMEH+LPDT RCLTEPDY+PIA +V  WNL+G ATCGFFSRDCLY+FL+ P TGK+DY D+TFPRNRSFVF+GANQV L+KVTYSNIFMT+  EPQK GRTVN+SA ALEGSANW+LP  P+A DL+AVTLTRD C +       R GG      E FCTTV E VLSYEEFVY+VERKYL+PAT IGP+PDEVL P+VLVFE+P  T
Sbjct:   10 CFLLLNVISGFQAYARQTTKCDTTEAERAEVMRRTLESLENEYEFLPGSLSFPPFAQPAGRYGLVAFDGKVVNPPALCEITSRVDTPYGPGLCNYSFVLGPRDAVVGLFCTPPPVKYFSLRSYTGFRFRPQAWLPAVELADPDNNLTFNTTGRLP----REGPYLQG--------KREGSAESDAAPFCRTAAFVSTGDGVTARDVRRALANAGWAATATNLDVVSAEKAYFRDVRRPWAIDRSDAFVINYRVSQPIDSAAVAPYFASSYPFYMLRHR---PEVSSATSNRELGNASGAPAQATLPTSGYLNMAPGGNLGHLPDIEDENAPREPLTTPPLRPRGTGQDESYLLPTLARLEEAVTAYMGRSRGAVLHARWEMEHILPDTQRCLTEPDYFPIAASVPEWNLTGFATCGFFSRDCLYTFLSPPTTGKVDYGDLTFPRNRSFVFLGANQVGLEKVTYSNIFMTATAEPQKQGRTVNFSAQALEGSANWFLPEDPEAKDLFAVTLTRDDCRQGVLVKDGRRGGA-LSTDEAFCTTVSEGVLSYEEFVYIVERKYLEPATQIGPDPDEVLPPVVLVFESPNIT 580

The following BLAST results are available for this feature:

BLAST of NO15G00410.1 vs.

BLAST of NO15G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20787.1	1.300e-217	66.10	hypothetical protein Naga_100423g2 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO15G00410	NO15G00410	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO15G00410.1	NO15G00410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO15G00410.1.cds1	NO15G00410.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00410.1.cds2	NO15G00410.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00410.1.cds3	NO15G00410.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO15G00410.1.cds4	NO15G00410.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:141882..144317-
coding sequence from alignment at chr15:141882..144317-

mRNA sequence

>NO15G00410.1 ID=NO15G00410.1|Name=NO15G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1927bp
ATAGAATGGGCAAGATGCAAGTCCTCCCATTGTGCCTGTGGCTCCTTTAC
GCGTTGGTAGCTCCTCAAGCGTACGGCTTGCAGACCACGAAATGCGACAC
GACCGAGGCGGAAAGGGCGCGTTACACACTCAAGGCACTGAAGCAGCTGG
AAGACACCTACGAGATTTTACCAGGCTCGCTCTCCTTCCCAGATTTTGCG
CAGCCGGCGGGACGATATGGATTAGTGGCGTTTGACGGCCAGGAGATAAA
CCCTCCAGCCCTGTGCGCTATCACCTCCGGCGTCAACACACCCTACGGAC
CAGGCCTCTGCAATTTCTCATTTGTCCTCGGCCCGCGTGATGCTGTCGTT
GGTCTTTTCTGCACACCCCCACCTGTCAAGTACTTTTCCCTTCGTTCCTA
CACGGGCTTCCGTTTCCGGCCCCAAGCCTGGCTCCCAGCCGTTGAACTCG
CCGATCCCGACAACAACCTGACATTTAATACAACGGGCAAGGCATCCGGA
ATTATGTGGAGGGAGGGATGTATACGTGGAGATATGGGAAAGAGGGCAGT
CACGAAGAAAGAGGGGGTGGAGGACGATGAGTCACCATTCTGCAAAACTG
CCTTGTTTGTAAGCACTGCAGACGGGGCCACGGCACGGGAGGCTCACGAA
GCGTTTCGGTCTGCAGGATGGCCGGAGGCGGCCATGAACTTAGACGTGGT
GTCGGCAGAAAAGGCATACTTTCGTAACTTTCGCTTGCCATGGGTCGTGG
ATAGAAGCGATGCGTTCGTGATTAACTTCCGTGTGTCCCAGCCGTTGAAT
CGAACTGCCGTCGAGCCCTACTACTTCTCGTCTTATCCCTTTTACATGCT
GCGGCACAAGTCTACCCTTCCTTCTCTCCGTCCAGTACAGCAGCAGCGCG
AGCTGGGGAAAGAGCAGCAGCACAAGCAGCACCAGCAGGAGGACCACCAC
CACCGCTACCTCCAGCAGGACGATCTCGTTAACCAGCCCCGCGAGCCTCT
CACCACCCCTCCTCTTCGTCCACGTGGTACGGGTGACGACGAAGAGTACC
TACTTCCATCGTTAGCCGCGCTGGAGGACTCGGTCATTTCATACATGGAC
AAAAGTCGAGGAGCGAAGCTGCATGCGCGCTGGGAAATGGAGCATGTGTT
GCCGGATACGGGACGGTGCCTTACTGAGCCGGACTACTACCCGATAGCGG
AGAATGTAAAGGCGTGGAATCTCTCTGGGATCGCTACCTGCGGCTTTTTC
TCTCGCGACTGCCTCTACAGCTTCCTCGCCCTCCCGGATACGGGCAAAAT
TGACTACGCAGACATCACCTTCCCGCGAAACCGCTCTTTCGTCTTCGTGG
GTGCCAATCAAGTGCGTTTGCAAAAAGTCACCTACTCCAACATTTTCATG
ACATCCATTTTGGAGCCTCAGAAACCGGGGCGCACTGTTAATTACAGCGC
TGACGCATTGGAGGGCAGTGCCAATTGGTACCTCCCAGCCTTGCCTGATG
CCAACGACTTGTACGCAGTCACGCTCACCCGTGACGCCTGTGATCGCCGA
CCTCCTCCATCTGGAGAGAGGGAGGGAGGGGGAAACGAAGGGGTTAAGGA
GCCGTTTTGTACGACCGTGGGGGAAAAGGTGTTAAGCTATGAAGAATTCG
TGTACGTGGTGGAAAGAAAGTACTTGCAGCCCGCGACCATGATCGGCCCG
AATCCTGATGAGGTTCTAGCCCCTATAGTTCTCGTGTTTGAGACTCCGGA
GGATACTGTACCGGGACCATGGATGAGTGAGGGTGAAGAAAAGGGTGCTG
TTGCCGAAGTGTAAATACCACTATCTCGTATGATACGGCACGGTGATAGA
CGGTTATAAGATTATGACGAACGAGTCGGAGAACTCCATAAAGAGCAATT
TTATAACTCTCTTCCTCTCCGTTGATA

protein sequence of NO15G00410.1

>NO15G00410.1-protein ID=NO15G00410.1-protein|Name=NO15G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=603bp
MGKMQVLPLCLWLLYALVAPQAYGLQTTKCDTTEAERARYTLKALKQLED
TYEILPGSLSFPDFAQPAGRYGLVAFDGQEINPPALCAITSGVNTPYGPG
LCNFSFVLGPRDAVVGLFCTPPPVKYFSLRSYTGFRFRPQAWLPAVELAD
PDNNLTFNTTGKASGIMWREGCIRGDMGKRAVTKKEGVEDDESPFCKTAL
FVSTADGATAREAHEAFRSAGWPEAAMNLDVVSAEKAYFRNFRLPWVVDR
SDAFVINFRVSQPLNRTAVEPYYFSSYPFYMLRHKSTLPSLRPVQQQREL
GKEQQHKQHQQEDHHHRYLQQDDLVNQPREPLTTPPLRPRGTGDDEEYLL
PSLAALEDSVISYMDKSRGAKLHARWEMEHVLPDTGRCLTEPDYYPIAEN
VKAWNLSGIATCGFFSRDCLYSFLALPDTGKIDYADITFPRNRSFVFVGA
NQVRLQKVTYSNIFMTSILEPQKPGRTVNYSADALEGSANWYLPALPDAN
DLYAVTLTRDACDRRPPPSGEREGGGNEGVKEPFCTTVGEKVLSYEEFVY
VVERKYLQPATMIGPNPDEVLAPIVLVFETPEDTVPGPWMSEGEEKGAVA
EV*

mRNA from alignment at chr15:141882..144317-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO15G00410.1 ID=NO15G00410.1|Name=NO15G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2436bp|location=Sequence derived from alignment at chr15:141882..144317- (Nannochloropsis oceanica)
ATAGAATGGGCAAGATGCAAGTCCTCCCATTGTGCCTGTGGCTCCTTTAC
GCGTTGGTAGCTCCTCAAGCGTACGGCTTGCAGACCACGAAATGCGACAC
GACCGAGGCGGAAAGGGCGCGTTACACACTCAAGGCACTGAAGCAGCTGG
AAGACACCTACGAGATTTTACCAGGCTCGCTCTCCTTCCCAGATTTTGCG
CAGCCGGCGGGACGATATGGATTAGGTGCGTGGATAGGGGGTCGAGAGTA
TGGGAGACGGGAGATAGGCGTTTTAAGATTAGCAGCTCGTTGACTCGTTT
ATTCCTAATATATATGCACCATCGAACAGTGGCGTTTGACGGCCAGGAGA
TAAACCCTCCAGCCCTGTGCGCTATCACCTCCGGCGTCAACACACCCTAC
GGACCAGGCCTCTGCAATTTCTCATTTGTCCTCGGCCCGCGTGATGCTGT
CGTTGGTCTTTTCTGCACACCCCCACCTGTCAAGTACTTTTCCCTTCGTT
CCTACACGGGCTTCCGTTTCCGGCCCCAAGCCTGGCTCCCAGCCGTTGAA
CTCGCCGATCCCGACAACAACCTGACATTTAATACAACGGGCAAGGCATC
CGGAATTATGTGGAGGGAGGGATGTATACGTGGAGATATGGGAAAGAGGG
CAGTCACGAAGAAAGAGGGGGTGGAGGACGATGAGTCACCATTCTGCAAA
ACTGCCTTGTTTGTAAGCACTGCAGACGGGGCCACGGCACGGGAGGCTCA
CGAAGCGTTTCGGTCTGCAGGATGGCCGGAGGCGGCCATGAACTTAGACG
TGGTGTCGGCAGAAAAGGCATACTTTCGTAACTTTCGCTTGCCATGGGTC
GTGGATAGAAGCGATGCGTTCGTGATTAACTTCCGTGTGTCCCAGCCGTT
GAATCGAACTGCCGTCGAGCCCTACTACTTCTCGTCTTATCCCTTTTACA
TGCTGCGGCACAAGTCTACCCTTCCTTCTCTCCGTCCAGTACAGCAGCAG
CGCGAGCTGGGGAAAGAGCAGCAGCACAAGCAGCACCAGCAGGAGGACCA
CCACCACCGCTACCTCCAGCAGGACGATCTCGTTAACCAGCCCCGCGAGC
CTCTCACCACCCCTCCTCTTCGTCCACGTGGTACGGGTGACGACGAAGAG
TACCTACTTCCATCGTTAGCCGCGCTGGAGGACTCGGTCATTTCATACAT
GGACAAAAGTCGAGGAGCGAAGCTGCATGCGCGCTGGGAAATGGAGCATG
TGTTGCCGGATACGGGACGGTGCCTTACTGAGCCGGACTACTACCCGATA
GCGGAGAATGTAAAGGCGTGGTAAGGAAAGGGGGAGAGAGGGAGGATGGA
AAGGTCACTGGTTGCGTGTGGCACAATATCGAAATTTGATATTATTATTA
TATTTGTGTATCACAGTGTCTATGTACGTGTATATTATGTCTTTTATTTC
ATTGCCTTGAATCTACAAGTTATATCTCTCCTCCTTTCTCCCCTCTCTCC
TCAGGAATCTCTCTGGGATCGCTACCTGCGGCTTTTTCTCTCGCGACTGC
CTCTACAGCTTCCTCGCCCTCCCGGATACGGGCAAAATTGACTACGCAGA
CATCACCTTCCCGCGAAACCGCTCTTTCGTCTTCGTGGGTGCCAATCAAG
TGCGTTTGCAAAAAGTCACCTACTCCAACATTTTCATGACATCCATTTTG
GAGCCTCAGAAACCGGGGCGCACTGTTAATTACAGCGCTGACGCATTGGG
TATGTCTGAAACTTTGTCGGTATCTAGATACTTTCCTTAGTCCCTTGCTG
TTTTTCAGTCATATGGCTTCTTGTCCCTCTTGTCTGGCCTACATCATCCG
TCAAGTGTTTGTTGCCGCTTTCATTCCAGACATTGGGGAATCATCGCACT
GATCCTCTACCTCCTTTTCATCAATCCCTCTCCCTCCCACCTAACCCCAA
CCTTCCTTCTCCTACTACAGAGGGCAGTGCCAATTGGTACCTCCCAGCCT
TGCCTGATGCCAACGACTTGTACGCAGTCACGCTCACCCGTGACGCCTGT
GATCGCCGACCTCCTCCATCTGGAGAGAGGGAGGGAGGGGGAAACGAAGG
GGTTAAGGAGCCGTTTTGTACGACCGTGGGGGAAAAGGTGTTAAGCTATG
AAGAATTCGTGTACGTGGTGGAAAGAAAGTACTTGCAGCCCGCGACCATG
ATCGGCCCGAATCCTGATGAGGTTCTAGCCCCTATAGTTCTCGTGTTTGA
GACTCCGGAGGATACTGTACCGGGACCATGGATGAGTGAGGGTGAAGAAA
AGGGTGCTGTTGCCGAAGTGTAAATACCACTATCTCGTATGATACGGCAC
GGTGATAGACGGTTATAAGATTATGACGAACGAGTCGGAGAACTCCATAA
AGAGCAATTTTATAACTCTCTTCCTCTCCGTTGATA

Coding sequence (CDS) from alignment at chr15:141882..144317-

>NO15G00410.1 ID=NO15G00410.1|Name=NO15G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at chr15:141882..144317- (Nannochloropsis oceanica)
ATGGGCAAGATGCAAGTCCTCCCATTGTGCCTGTGGCTCCTTTACGCGTT
GGTAGCTCCTCAAGCGTACGGCTTGCAGACCACGAAATGCGACACGACCG
AGGCGGAAAGGGCGCGTTACACACTCAAGGCACTGAAGCAGCTGGAAGAC
ACCTACGAGATTTTACCAGGCTCGCTCTCCTTCCCAGATTTTGCGCAGCC
GGCGGGACGATATGGATTAGTGGCGTTTGACGGCCAGGAGATAAACCCTC
CAGCCCTGTGCGCTATCACCTCCGGCGTCAACACACCCTACGGACCAGGC
CTCTGCAATTTCTCATTTGTCCTCGGCCCGCGTGATGCTGTCGTTGGTCT
TTTCTGCACACCCCCACCTGTCAAGTACTTTTCCCTTCGTTCCTACACGG
GCTTCCGTTTCCGGCCCCAAGCCTGGCTCCCAGCCGTTGAACTCGCCGAT
CCCGACAACAACCTGACATTTAATACAACGGGCAAGGCATCCGGAATTAT
GTGGAGGGAGGGATGTATACGTGGAGATATGGGAAAGAGGGCAGTCACGA
AGAAAGAGGGGGTGGAGGACGATGAGTCACCATTCTGCAAAACTGCCTTG
TTTGTAAGCACTGCAGACGGGGCCACGGCACGGGAGGCTCACGAAGCGTT
TCGGTCTGCAGGATGGCCGGAGGCGGCCATGAACTTAGACGTGGTGTCGG
CAGAAAAGGCATACTTTCGTAACTTTCGCTTGCCATGGGTCGTGGATAGA
AGCGATGCGTTCGTGATTAACTTCCGTGTGTCCCAGCCGTTGAATCGAAC
TGCCGTCGAGCCCTACTACTTCTCGTCTTATCCCTTTTACATGCTGCGGC
ACAAGTCTACCCTTCCTTCTCTCCGTCCAGTACAGCAGCAGCGCGAGCTG
GGGAAAGAGCAGCAGCACAAGCAGCACCAGCAGGAGGACCACCACCACCG
CTACCTCCAGCAGGACGATCTCGTTAACCAGCCCCGCGAGCCTCTCACCA
CCCCTCCTCTTCGTCCACGTGGTACGGGTGACGACGAAGAGTACCTACTT
CCATCGTTAGCCGCGCTGGAGGACTCGGTCATTTCATACATGGACAAAAG
TCGAGGAGCGAAGCTGCATGCGCGCTGGGAAATGGAGCATGTGTTGCCGG
ATACGGGACGGTGCCTTACTGAGCCGGACTACTACCCGATAGCGGAGAAT
GTAAAGGCGTGGAATCTCTCTGGGATCGCTACCTGCGGCTTTTTCTCTCG
CGACTGCCTCTACAGCTTCCTCGCCCTCCCGGATACGGGCAAAATTGACT
ACGCAGACATCACCTTCCCGCGAAACCGCTCTTTCGTCTTCGTGGGTGCC
AATCAAGTGCGTTTGCAAAAAGTCACCTACTCCAACATTTTCATGACATC
CATTTTGGAGCCTCAGAAACCGGGGCGCACTGTTAATTACAGCGCTGACG
CATTGGAGGGCAGTGCCAATTGGTACCTCCCAGCCTTGCCTGATGCCAAC
GACTTGTACGCAGTCACGCTCACCCGTGACGCCTGTGATCGCCGACCTCC
TCCATCTGGAGAGAGGGAGGGAGGGGGAAACGAAGGGGTTAAGGAGCCGT
TTTGTACGACCGTGGGGGAAAAGGTGTTAAGCTATGAAGAATTCGTGTAC
GTGGTGGAAAGAAAGTACTTGCAGCCCGCGACCATGATCGGCCCGAATCC
TGATGAGGTTCTAGCCCCTATAGTTCTCGTGTTTGAGACTCCGGAGGATA
CTGTACCGGGACCATGGATGAGTGAGGGTGAAGAAAAGGGTGCTGTTGCC
GAAGTGTAA

Synonyms

Publications