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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr15 | genome | chr15:64702..67639 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G00240.1 vs.
Match: PIO35236.1 (GPI mannosyltransferase 2 [Rana catesbeiana]) HSP 1 Score: 160.2 bits (404), Expect = 1.800e-35 Identity = 162/540 (30.00%), Postives = 235/540 (43.52%), Query Frame = 0
Query: 45 RNSRERPHAHVKRRLVVRALGIRAIMLLYAVGMDVLLPDHDATGVYTFHPPPS----HPLPFFLSPFTKWDSAHFLSIAQDNYQSLPSHAFFPLYPFLLRHLALPPALPP----------VLVAVVVNVLCSTIAALALYELTLLVEREGREGGGGERRRRVRKEGGRERGRAWWTAILFLVNPASIFFVTAYSEATYAALSFSGLYLVTLASFPTASPYRTRLLPFLAGSLLLALAGATRSNGLLLVLPLLLLSPVLPPVLLH--LLPPLPNSDKARPALPPFLLLLLDLILRAAACVCVILPYLAWQYHGYRTFC---------------LSKEGGREGGRE---GWCDARIPNMYNHIQETYWNVAFLNYWCWKQVPNFLLAAPVFFLTFQGLFLYARR---------VWARRREHDLRLVG--LYLHWAVLALFILFVA---HVQIATRLLFSACPPLSWHLASFFFPEEEEEDDDEKEGGREGRTEGLTLSMEREGRKEGRREGRKDGWWWYVALYIVVFNLVGPAMQVNFLPWT 537
R SR+ P H ++ +L R + L+ V ++L+PDH A PPPS H L +WD+ HFL IA+ Y + AFFPL P ++ LA P LP +L + ++N CST+AA++LY L + + R A+ A+LF ++P SIF AYSE+ +A +FSGL+ + + RLL AGS+LL+LA A RSNGL V L+H + L S RP L+ R + +ILP+ +Q + Y FC L+K+ G E WC P +Y+HIQ YW V Y+ +Q+PNF LA PV FL F Y +W R++ G ++++ A L+ F A HVQ+ TRLLFS+CP L W + EE E + +E + L + + R + Y + + ++G A+ VNFLPWT
Sbjct: 2 RGSRD-PFVH---EIIRFSLSCRGLTLIMQVLFNLLIPDHTADAFSPPRPPPSSLGDHIAELLLRGLGRWDAEHFLFIAEHGYVYEHNMAFFPLLPMVITGLAQGPLLPLAGVLTLRSRLLLSSALLNCACSTLAAVSLYLLGCVTLQSRRT--------------------AFLAALLFCMSPISIFMTVAYSESLFALATFSGLWHLQ----------KNRLL---AGSVLLSLATAARSNGL-----------VNAGFLIHSGMKVFLQQSGCCRP-----------LMKRLCGILLMILPFAVFQGYSYYRFCFPSYGEGHLPEELIQLAKDKGYRVRGEPIPAWCSYHFPLVYSHIQSEYWGVGLFRYFQLRQLPNFFLATPVIFLGICATFKYISSNMELCSTLGLWDVRKKDSYGFYGPRVFVYVAQLSFLAAFGALCMHVQVVTRLLFSSCPVLFWFCSHII--EENEPWIWGLQRNKEASNPAMRLLRAWDSLRTRTR---------ILLGYFLGYWVIGTALHVNFLPWT 471
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G00240.1 ID=NO15G00240.1|Name=NO15G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp
ACAGACAAGCAACGAGAGTGAACGAGTCATTATCCGTGAAGTACTCTTGT
GCCCACTCGCAAGGTCCGCTGTAAACCAAGGCGCTGTCCCGACCAATGCG
TCTCCGCTCGGGCACCGGCAAGCCTCCTCCTGCCTCCTCTTCCACCGCCA
GTAGAAGCACCAACATCACCAGCAGCAGCAGCAGCAGTACCCTCAGTAGC
TGCAGCACCAGCACCAGCACCAGCACCAGGAACAGCAGAGAGCGCCCTCA
TGCACATGTCAAGCGGCGCCTCGTCGTCCGGGCACTGGGCATCCGCGCGA
TCATGTTGCTGTACGCCGTGGGGATGGACGTGCTCCTCCCTGACCATGAC
GCCACGGGGGTCTACACCTTCCATCCCCCTCCCTCCCACCCCCTCCCTTT
CTTCCTCAGCCCCTTCACCAAGTGGGACAGTGCCCACTTCCTCTCTATAG
CCCAAGACAACTACCAGTCCCTCCCCTCCCATGCCTTCTTCCCCCTCTAT
CCCTTCCTCCTTCGGCACCTCGCCCTCCCTCCCGCCCTTCCTCCCGTCCT
CGTCGCCGTGGTGGTGAACGTCCTCTGTTCCACCATCGCGGCCTTGGCCC
TCTATGAGCTCACCCTCCTGGTGGAGAGGGAAGGAAGAGAAGGAGGAGGA
GGAGAAAGAAGACGAAGAGTAAGGAAGGAGGGGGGAAGGGAAAGAGGGAG
GGCGTGGTGGACTGCCATTCTCTTCTTGGTGAACCCGGCGTCGATATTTT
TTGTCACAGCCTATTCAGAGGCCACATACGCCGCCCTCTCCTTCTCGGGT
CTCTACCTCGTCACACTCGCCTCCTTCCCCACTGCCTCCCCCTACCGCAC
GCGTCTCCTCCCCTTCCTTGCCGGCAGCCTCTTGCTGGCCCTCGCGGGCG
CCACTCGGTCCAATGGCCTCCTCCTCGTCCTCCCCCTCCTCCTCCTCTCC
CCCGTCCTCCCTCCAGTCCTCCTTCACCTTCTACCCCCCCTTCCAAATTC
CGACAAAGCCCGCCCCGCCCTCCCCCCCTTCCTCCTCCTTCTCCTTGACC
TCATCTTGCGGGCTGCGGCGTGTGTCTGCGTGATCCTTCCCTACCTCGCG
TGGCAATACCATGGATACCGGACCTTCTGCCTCTCGAAGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGTTGGTGTGACGCGCGGATTCCAAATATGTATA
ACCACATTCAGGAGACTTACTGGAACGTGGCATTTCTCAACTACTGGTGT
TGGAAACAAGTACCTAATTTCCTCCTGGCGGCTCCCGTCTTCTTCCTCAC
CTTTCAAGGTCTCTTCCTCTATGCCCGCCGTGTGTGGGCACGAAGAAGAG
AGCACGACTTGAGGCTGGTGGGGCTCTATCTGCATTGGGCTGTGCTTGCC
CTCTTCATCCTCTTTGTTGCTCACGTCCAGATTGCGACCCGGCTCCTGTT
CTCTGCTTGTCCGCCTCTTTCTTGGCATTTGGCTTCCTTTTTCTTCCCTG
AGGAGGAGGAGGAGGACGACGACGAGAAGGAGGGAGGGAGGGAGGGACGG
ACGGAGGGTCTTACTTTAAGCATGGAAAGGGAGGGAAGGAAGGAGGGAAG
GAGGGAGGGAAGGAAGGATGGGTGGTGGTGGTATGTGGCTTTGTACATAG
TGGTATTCAATCTGGTGGGGCCGGCGATGCAGGTCAACTTTTTGCCCTGG
ACCTAAAAGTGGGGAGGGAAAGAGCGAAAGAATGGGGAGAGGAAGAAAAG
GAGGAGGAGGAGTACAAAGAAACTAACAAAACGAAAATTGCCTCTTTGTT
TACGTCCACGGCCCTCCACGCATAAAAGCAAAGTCCGGAGCGTAAATTCC
A back to topprotein sequence of NO15G00240.1 >NO15G00240.1-protein ID=NO15G00240.1-protein|Name=NO15G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MRLRSGTGKPPPASSSTASRSTNITSSSSSSTLSSCSTSTSTSTRNSRER
PHAHVKRRLVVRALGIRAIMLLYAVGMDVLLPDHDATGVYTFHPPPSHPL
PFFLSPFTKWDSAHFLSIAQDNYQSLPSHAFFPLYPFLLRHLALPPALPP
VLVAVVVNVLCSTIAALALYELTLLVEREGREGGGGERRRRVRKEGGRER
GRAWWTAILFLVNPASIFFVTAYSEATYAALSFSGLYLVTLASFPTASPY
RTRLLPFLAGSLLLALAGATRSNGLLLVLPLLLLSPVLPPVLLHLLPPLP
NSDKARPALPPFLLLLLDLILRAAACVCVILPYLAWQYHGYRTFCLSKEG
GREGGREGWCDARIPNMYNHIQETYWNVAFLNYWCWKQVPNFLLAAPVFF
LTFQGLFLYARRVWARRREHDLRLVGLYLHWAVLALFILFVAHVQIATRL
LFSACPPLSWHLASFFFPEEEEEDDDEKEGGREGRTEGLTLSMEREGRKE
GRREGRKDGWWWYVALYIVVFNLVGPAMQVNFLPWT* back to topmRNA from alignment at chr15:64702..67639- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G00240.1 ID=NO15G00240.1|Name=NO15G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2938bp|location=Sequence derived from alignment at chr15:64702..67639- (Nannochloropsis oceanica)
ACAGACAAGCAACGAGAGTGAACGAGTCATTATCCGTGAAGTACTCTTGT
GCCCACTCGCAAGGTCCGCTGTAAACCAAGGCGCTGTCCCGACCAATGCG
TCTCCGCTCGGGCACCGGCAAGCCTCCTCCTGCCTCCTCTTCCACCGCCA
GTAGAAGCACCAACATCACCAGCAGCAGCAGCAGCAGTACCCTCAGTAGC
TGCAGCACCAGCACCAGCACCAGCACCAGGAACAGCAGAGAGCGCCCTCA
TGCACATGGTAAGGGGCCTATCCATGCATGTCTCCATCTTTTCTCATATT
CCTCCCGTCTTTTTGCTCCATTTACCCAACCCCTCCCTCTCCCTGCCTCC
TCCATCCCCTTGCCTCCTCCCTTCCCTTGCTTTCTCCCTCTCTATACTCG
GATGCGTGCACATACAGTCAAGCGGCGCCTCGTCGTCCGGGCACTGGGCA
TCCGCGCGATCATGTTGCTGTACGCCGTGGGGATGGACGTGCTCCTCCCT
GACCATGACGCCACGGTAAGTCAGGAACGAGCGAGGGAGGGCTGAGCCGG
GCACGACACTCAACAAGCAGCTCTTCCTCCTCCCTCCCTACCTCCCTCCC
TCCTCCCCTCCCTTCTCCTCCCATAGGGGGTCTACACCTTCCATCCCCCT
CCCTCCCACCCCCTCCCTTTCTTCCTCAGCCCCTTCACCAAGTGGGACAG
TGCCCACTTCCTCTCTATAGCCCAAGACAACTACCAGTCCCTCCCCTCCC
ATGCCTTCTTCCCCCTCTATCCCTTCCTCCTTCGGCACCTCGCCCTCCCT
CCCGCCCTTCCTCCCGTCCTCGTCGCCGTGGTGGTGAACGTCCTCTGTTC
CACCATCGCGGCCTTGGCCCTCTATGAGCTCACCCTCCTGGTGGAGAGGG
AAGGAAGAGAAGGAGGAGGAGGAGAAAGAAGACGAAGAGTAAGGAAGGAG
GGGGGAAGGGAAAGAGGGAGGGCGTGGTGGACTGCCATTCTCTTCTTGGT
GAACCCGGCGTCGATATTTTTTGTCACAGCCTATTCAGAGGTATGCGTGC
CAGGAGGGAGGGAGGGAGGGAGGGAGGGCAGTGGGGCGTAAAAGCGCCAG
AGTTACCTACTTCCCCCAATTCTGAATCCTCTCCTTTTCCTTGACTATCT
TCTTTCCCCTCCTCCCTTCCTCCCTCCCTCCCTCCTTCAGGCCACATACG
CCGCCCTCTCCTTCTCGGGTCTCTACCTCGTCACACTCGCCTCCTTCCCC
ACTGCCTCCCCCTACCGCACGCGTCTCCTCCCCTTCCTTGCCGGTACATT
CTTTTCTCCCTCCCTCCCTCCCTCCATCTTTCTCTCTCCTCCTCCCTTCA
TTCCTTCATTCCTGCCTCCTTCCCTCTTCCCCTCCCTCTGGCAGGCTCCC
ACCCTCTCACTTCCCCGCCCGCTCTCCCTCCCCCTCTCCCCCCTGCTCGT
CCCTCCCTTTCTCTCTCCCAGGCAGCCTCTTGCTGGCCCTCGCGGGCGCC
ACTCGGTCCAATGGCCTCCTCCTCGTCCTCCCCCTCCTCCTCCTCTCCCC
CGTCCTCCCTCCAGTCCTCCTTCACCTTCTACCCCCCCTTCCAAATTCCG
ACAAAGCCCGCCCCGCCCTCCCCCCCTTCCTCCTCCTTCTCCTTGACCTC
ATCTTGCGGGCTGCGGCGTGTGTCTGCGTGATCCTTCCCTACCTCGCGTG
GCAATACCATGGATACCGGACCTTCTGCCTCTCGAAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGTTGGTGTGACGCGCGGATTCCAAATATGTATAAC
CACATTCAGGCACGGCGGGAGGGAGGGAAGGAGGGAGGGATGAAGGAAGG
AAGGGAGGGAGGGAAGATGGTTATGGCGTTGTCTGTACTCATTCTCCCCT
CCCCTCCCTCCACATCCTTCCTTCCTCTCTCCCTCCCTTCCTCCCTCCCT
CCACAGGAGACTTACTGGAACGTGGCATTTCTCAACTACTGGTGTTGGAA
GTAAGTAATGCGCCCCCCCCCCCTCCCCCCCCTCCCTCCCCTCCTCCCTC
ATCCTTTACAACCTCCCTCCCTTCCTCCCCCCCCCTACCTATTATCCTTC
TGACCAAACCCCCCTCTCCCGCCCGCCCTCCCTCCCTCCCTCCCTCCCTA
GACAAGTACCTAATTTCCTCCTGGCGGCTCCCGTCTTCTTCCTCACCTTT
CAAGGTCTCTTCCTCTATGCCCGCCGTGTGTGGGCACGAAGAAGAGAGCA
CGACTTGAGGTGGGTGTTGAGGGAGGGAGGGAAGGAGGAAGGGAAGGAGG
CTGGGATGAATGGAGAGATCATTCACTTATGATGGATTAAACCACCAAAT
AGGCTGGTGGGGCTCTATCTGCATTGGGCTGTGCTTGCCCTCTTCATCCT
CTTTGTTGCTCACGTCCAGGTAAGGCTTTCTCCCTCCCTCCTTCGCTCCC
TCCCTCGCTCTCTTTCTTTCTCCCTCTCACACATGATCTCTCTCTCTCCT
TCCCTCCCTGTCTCCAGATTGCGACCCGGCTCCTGTTCTCTGCTTGTCCG
CCTCTTTCTTGGCATTTGGCTTCCTTTTTCTTCCCTGAGGAGGAGGAGGA
GGACGACGACGAGAAGGAGGGAGGGAGGGAGGGACGGACGGAGGGTCTTA
CTTTAAGCATGGAAAGGGAGGGAAGGAAGGAGGGAAGGAGGGAGGGAAGG
AAGGATGGGTGGTGGTGGTATGTGGCTTTGTACATAGTGGTATTCAATCT
GGTGGGGCCGGCGATGCAGGTCAACTTTTTGCCCTGGACCTAAAAGTGGG
GAGGGAAAGAGCGAAAGAATGGGGAGAGGAAGAAAAGGAGGAGGAGGAGT
ACAAAGAAACTAACAAAACGAAAATTGCCTCTTTGTTTACGTCCACGGCC
CTCCACGCATAAAAGCAAAGTCCGGAGCGTAAATTCCA back to topCoding sequence (CDS) from alignment at chr15:64702..67639- >NO15G00240.1 ID=NO15G00240.1|Name=NO15G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at chr15:64702..67639- (Nannochloropsis oceanica)
ATGCGTCTCCGCTCGGGCACCGGCAAGCCTCCTCCTGCCTCCTCTTCCAC
CGCCAGTAGAAGCACCAACATCACCAGCAGCAGCAGCAGCAGTACCCTCA
GTAGCTGCAGCACCAGCACCAGCACCAGCACCAGGAACAGCAGAGAGCGC
CCTCATGCACATGTCAAGCGGCGCCTCGTCGTCCGGGCACTGGGCATCCG
CGCGATCATGTTGCTGTACGCCGTGGGGATGGACGTGCTCCTCCCTGACC
ATGACGCCACGGGGGTCTACACCTTCCATCCCCCTCCCTCCCACCCCCTC
CCTTTCTTCCTCAGCCCCTTCACCAAGTGGGACAGTGCCCACTTCCTCTC
TATAGCCCAAGACAACTACCAGTCCCTCCCCTCCCATGCCTTCTTCCCCC
TCTATCCCTTCCTCCTTCGGCACCTCGCCCTCCCTCCCGCCCTTCCTCCC
GTCCTCGTCGCCGTGGTGGTGAACGTCCTCTGTTCCACCATCGCGGCCTT
GGCCCTCTATGAGCTCACCCTCCTGGTGGAGAGGGAAGGAAGAGAAGGAG
GAGGAGGAGAAAGAAGACGAAGAGTAAGGAAGGAGGGGGGAAGGGAAAGA
GGGAGGGCGTGGTGGACTGCCATTCTCTTCTTGGTGAACCCGGCGTCGAT
ATTTTTTGTCACAGCCTATTCAGAGGCCACATACGCCGCCCTCTCCTTCT
CGGGTCTCTACCTCGTCACACTCGCCTCCTTCCCCACTGCCTCCCCCTAC
CGCACGCGTCTCCTCCCCTTCCTTGCCGGCAGCCTCTTGCTGGCCCTCGC
GGGCGCCACTCGGTCCAATGGCCTCCTCCTCGTCCTCCCCCTCCTCCTCC
TCTCCCCCGTCCTCCCTCCAGTCCTCCTTCACCTTCTACCCCCCCTTCCA
AATTCCGACAAAGCCCGCCCCGCCCTCCCCCCCTTCCTCCTCCTTCTCCT
TGACCTCATCTTGCGGGCTGCGGCGTGTGTCTGCGTGATCCTTCCCTACC
TCGCGTGGCAATACCATGGATACCGGACCTTCTGCCTCTCGAAGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGTTGGTGTGACGCGCGGATTCCAAATAT
GTATAACCACATTCAGGAGACTTACTGGAACGTGGCATTTCTCAACTACT
GGTGTTGGAAACAAGTACCTAATTTCCTCCTGGCGGCTCCCGTCTTCTTC
CTCACCTTTCAAGGTCTCTTCCTCTATGCCCGCCGTGTGTGGGCACGAAG
AAGAGAGCACGACTTGAGGCTGGTGGGGCTCTATCTGCATTGGGCTGTGC
TTGCCCTCTTCATCCTCTTTGTTGCTCACGTCCAGATTGCGACCCGGCTC
CTGTTCTCTGCTTGTCCGCCTCTTTCTTGGCATTTGGCTTCCTTTTTCTT
CCCTGAGGAGGAGGAGGAGGACGACGACGAGAAGGAGGGAGGGAGGGAGG
GACGGACGGAGGGTCTTACTTTAAGCATGGAAAGGGAGGGAAGGAAGGAG
GGAAGGAGGGAGGGAAGGAAGGATGGGTGGTGGTGGTATGTGGCTTTGTA
CATAGTGGTATTCAATCTGGTGGGGCCGGCGATGCAGGTCAACTTTTTGC
CCTGGACCTAA back to top
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