NO15G00130.1, NO15G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00130.1
Unique NameNO15G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length684
Alignment locationchr15:30582..32491 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:30582..32491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO15G00130.1 vs.
Match: XP_005855466.1 (hypothetical protein NGA_0139600 [Nannochloropsis gaditana CCMP526]; EKU20895.1 hypothetical protein NGA_0139600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 245.7 bits (626), Expect = 1.100e-61
Identity = 118/147 (80.27%), Postives = 132/147 (89.80%), Query Frame = 0 
Query:   28 TPTAIATHIEESHVIPAPITDVWSVIKSMKMETWWSLLDKVTSDSSAPGLSIGSTYTLHFKDGTAWGIVIMEASELHKSVSFELVSSNPSISVSSALHKLSCKPVTATNQSFISWSTDFSNDASADTVLDSRFKKREGLQGLHDHFA 175
            TPTAIATHIEE+HVIP+ IT+VW VIK MKMETWW+L+DK T DS   GL++GSTYTLHFKDGT WGIVI+EASELHK VSFE++SSNPSISVSSALH  +CKPVTAT+ +F+SWSTDFSNDASAD VLDSRFKKREGLQGLHD FA
Sbjct:    5 TPTAIATHIEETHVIPSAITEVWPVIKGMKMETWWNLVDKATPDSPGTGLALGSTYTLHFKDGTQWGIVIVEASELHKFVSFEIISSNPSISVSSALHTFTCKPVTATDHTFVSWSTDFSNDASADAVLDSRFKKREGLQGLHDLFA 151
The following BLAST results are available for this feature:
BLAST of NO15G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855466.11.100e-6180.27hypothetical protein NGA_0139600 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00130NO15G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00130.1NO15G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00130.1.cds1NO15G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00130.1.cds2NO15G00130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00130.1.cds3NO15G00130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00130.1.cds4NO15G00130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00130.1.cds5NO15G00130.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00130.1.cds6NO15G00130.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00130.1.cds7NO15G00130.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00130.1 ID=NO15G00130.1|Name=NO15G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=684bp
ATGGGTAGACTTGCCAACTGGAATAAAAACGATATGTATAGCCTACCTTC
TAAACCTTCTACTCAAAGCAACATGACCCACACGCCCACCGCTATCGCCA
CCCACATCGAGGAGAGCCATGTTATCCCCGCACCCATCACGGACGTGTGG
TCGGTCATTAAGAGCATGAAGATGGAGACGTGGTGGAGCTTGCTCGACAA
GGTCACATCCGACTCTTCTGCGCCCGGTCTGTCCATCGGGAGCACCTACA
CGCTGCACTTTAAGGACGGTACGGCATGGGGCATTGTGATCATGGAGGCC
AGCGAGCTGCATAAGTCTGTGTCCTTCGAGCTGGTGAGCAGCAATCCCAG
CATTTCTGTATCCTCGGCCCTCCACAAGCTTAGCTGCAAGCCCGTCACTG
CCACGAACCAGAGCTTCATCTCCTGGTCCACAGATTTCAGCAACGACGCC
TCCGCCGACACCGTCCTTGACTCTCGCTTCAAGAAGCGCGAAGGACTCCA
AGGACTGCATGACCACTTCGCTACCAATAAGTAGAGGGAGGGAGGAAGAG
AGAGCGGGAGGGACAGAGGGAGGGATAGAGGGAGGGAGGGAGAGAGGGAG
GAATAGAGGCCAAGAACTTTAGGAAGAGAGGGAGGGAGGGAGGGATAGAA
AGAGGGATAGAGGGAGGGACAGAGGGAGGGATAG
back to top

protein sequence of NO15G00130.1

>NO15G00130.1-protein ID=NO15G00130.1-protein|Name=NO15G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MGRLANWNKNDMYSLPSKPSTQSNMTHTPTAIATHIEESHVIPAPITDVW
SVIKSMKMETWWSLLDKVTSDSSAPGLSIGSTYTLHFKDGTAWGIVIMEA
SELHKSVSFELVSSNPSISVSSALHKLSCKPVTATNQSFISWSTDFSNDA
SADTVLDSRFKKREGLQGLHDHFATNK*
back to top

mRNA from alignment at chr15:30582..32491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00130.1 ID=NO15G00130.1|Name=NO15G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp|location=Sequence derived from alignment at chr15:30582..32491+ (Nannochloropsis oceanica)
ATGGGTAGACTTGCCAACTGGAATAAAAACGATATGTATAGGTGCGTGTG
TACGATGCGGCATGATTTGGCAATAGCGCAGCAGGGACATACGCCCTAAA
CCCAGACCGCGGCAGGAAAGCACGTCACTCAGTCTCCCTCCTCCCTTGTC
TCCGCCTCGTACTACTGCTGCTGCGCTGGCCGGTTTCCCATGCCATCTGG
GCGGCGGCACTGCTTTTCTCACGGTTGCGGGAGTGCTTTTCTCACACCAC
TCGCTCCTCCCGCTACACGTTACAGCCTACCTTCTAAACCTTCTACTCAA
AGCAACATGACCCACACGCCCACCGCTATCGCCACCCACATCGAGGAGAG
CCATGTTATCCCCGCACCCATCACGGACGGTAAGTGAGGCCAGGAGGGAG
GGAGGGAGGGAGGGAAGGAGGGAGGGAGAGAGGGAGGTAGGTAATTGGGG
TCTTTCACTTCTGCCTCGCCTTACATCGATCTCCCAAGAGAATCAGTTCA
ACAACCAACCAGCGCTACCTAACCTCCGTACTCTCTTCCTTCCTATGTCC
TAATTAAAGTGTGGTCGGTCATTAAGAGCATGAAGATGGAGACGTGGTGG
AGCTTGCTCGACAAGGTGGGGGAGGGAGGGGAGGGAGGGAGGGAGACAGG
GAGGCAGCATGCTTTCATTCATTTGTTCAACCGACATTATACACCATTCC
CCTCCCTCCTTTCTTTCTTTCCTCTTTCCCTCCCTCCCGCCCTCCCTTCC
TCCCCAAGGTCACATCCGACTCTTCTGCGCCCGGTCTGTCCATCGGGAGC
ACCTACACGCTGCACTTTAAGGACGGTACGGCATGGGGCATTGTGATCAT
GGAGGCCAGCGAGCTGCATAAGTGAGTACTAGAGGGAGGGAGGGAAGGCG
ACAATGGATTGTCAGGAGCCTCATGCCTATTGTCTAATCGACAGTCACTC
GACCACCTGCCCACGTACGCTTCCCTCACTCCCTCCCTCCCTCCCTCTCT
CCCTCTCCAGGTCTGTGTCCTTCGAGCTGGTGAGCAGCAATCCCAGCATT
TCTGTATCCTCGGCCCTCCACAAGCTTAGCTGCAAGGTAGGGACGAGGAA
AGGAGGGACAAAAGGAAGAGAAGGGGGCAGGGAGGCAGGGAGGGAGGGAG
GGAGGAACAGAAGGTGGGAGAAGCTTTGTCAGAGAGAGTAACCACCCCTG
CGTCTCTATGGTAGTGACCCTGCGCAAGTGTCACCCATCGCCCCCATCCA
CCTTGCCATGATGAGAAGGAGAGCGGGGGAGGGGGAGGAGGGGGAGGAGA
AAGAGCGAAAGGGGGTCGGGGAGGATGAGCTGGGGCAATGACAGTCGTAG
GCGCCATAATTTTCTCTCCTCGACTCAACAAAGAAATTTTAACCACTCCC
CTCCCTCCCTCCCTCCCTTCCTCCCTCCTCCCTCAGCCCGTCACTGCCAC
GAACCAGAGCTTCATCTCCTGGTCCACAGATTTCAGCAACGACGCCTCCG
CCGACACCGTCCTTGACTCTCGCTTCAAGAAGCGTGAGTCTGTTCACACC
TTCCCCCCCTCCCTCCCTCCCCTGTTCCTTCCCTCCTTCCTTCCCTCCTT
TCTTTCTTCCATCCCTCCCTCCCTCTTCTTCACGGATGATGATGCTCCCA
TTTCGTTTGAGAGAAAGGTACCACGACGCGAAGCACTCATCCCTCCCTCC
CTCCCTCCCTCAGGCGAAGGACTCCAAGGACTGCATGACCACTTCGCTAC
CAATAAGTAGAGGGAGGGAGGAAGAGAGAGCGGGAGGGACAGAGGGAGGG
ATAGAGGGAGGGAGGGAGAGAGGGAGGAATAGAGGCCAAGAACTTTAGGA
AGAGAGGGAGGGAGGGAGGGATAGAAAGAGGGATAGAGGGAGGGACAGAG
GGAGGGATAG
back to top

Coding sequence (CDS) from alignment at chr15:30582..32491+

>NO15G00130.1 ID=NO15G00130.1|Name=NO15G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at chr15:30582..32491+ (Nannochloropsis oceanica)
ATGGGTAGACTTGCCAACTGGAATAAAAACGATATGTATAGCCTACCTTC
TAAACCTTCTACTCAAAGCAACATGACCCACACGCCCACCGCTATCGCCA
CCCACATCGAGGAGAGCCATGTTATCCCCGCACCCATCACGGACGTGTGG
TCGGTCATTAAGAGCATGAAGATGGAGACGTGGTGGAGCTTGCTCGACAA
GGTCACATCCGACTCTTCTGCGCCCGGTCTGTCCATCGGGAGCACCTACA
CGCTGCACTTTAAGGACGGTACGGCATGGGGCATTGTGATCATGGAGGCC
AGCGAGCTGCATAAGTCTGTGTCCTTCGAGCTGGTGAGCAGCAATCCCAG
CATTTCTGTATCCTCGGCCCTCCACAAGCTTAGCTGCAAGCCCGTCACTG
CCACGAACCAGAGCTTCATCTCCTGGTCCACAGATTTCAGCAACGACGCC
TCCGCCGACACCGTCCTTGACTCTCGCTTCAAGAAGCGCGAAGGACTCCA
AGGACTGCATGACCACTTCGCTACCAATAAGTAG
back to top
Synonyms
Publications