NO15G00120.1, NO15G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G00120.1
Unique NameNO15G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr15:27770..30380 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:27770..30380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G00120.1 vs.
Match: EWM20824.1 (dihydrodipicolinate synthetase [Nannochloropsis gaditana])

HSP 1 Score: 488.0 bits (1255), Expect = 2.100e-134
Identity = 236/314 (75.16%), Postives = 271/314 (86.31%), Query Frame = 0 
Query:    1 MRGVFAPVLTPFLPGPDRAPDISRFLKHCRWLLSHHVNLAIFGTNSEANSMTTFEKLTLLHTLVQEGRVDPKRLMPGTGACAVADAVTLSKAAVKLGCGGVLVLPPFYYKNVSDEGIYRYFASLVDQVADSRLRVYLYHIPQVSGVGCSHALIERLLKDYPGVIAGIKDSSGDWEHTKSLITHF---GKCKGQTDGDTFLRVFAGSEAFLLRTLRAGGQGCISATANVNPSGIVELYHKHDSAQADRLQKECQRVRDTFPPNALVPSMKAALAHFSQDKEWERVRPPLVELKAEEKTVLLQGLTQVKFKMPGLG 312
            MRG+FAPVLTPFLP    APDI+RFL+H RWLLS+ VNLAIFGTNSEA+SMTT EKLTLLHTLV+EG+ DP RLMPGTGACAV DAVTLSKA+V+LGCGGVLVLPPFYYK V DEG++RY+A L++QVAD RLRVYLYHIPQVSGVG SH+LIERL+K YPG+IAGIKDS+GDW+HT SLITHF   GK         +LRVFAGSEAFLLRTLRAGGQGCISATANVNP+ IVELYH+H+++QADRLQ  CQR+R+ FPP+AL+PSMKA +AHF+ DK WERVRPPLVEL+ EEK  LL+ L ++KFKMP  G
Sbjct:    1 MRGIFAPVLTPFLPSG--APDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMPDPG 312
The following BLAST results are available for this feature:
BLAST of NO15G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20824.12.100e-13475.16dihydrodipicolinate synthetase [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G00120NO15G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G00120.1NO15G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G00120.1.cds1NO15G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00120.1.cds2NO15G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00120.1.cds3NO15G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00120.1.cds4NO15G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00120.1.cds5NO15G00120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00120.1.cds6NO15G00120.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00120.1.cds7NO15G00120.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00120.1.cds8NO15G00120.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G00120.1.cds9NO15G00120.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G00120.1 ID=NO15G00120.1|Name=NO15G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
ATGCGCGGTGTCTTCGCCCCCGTCCTAACGCCTTTCCTGCCTGGCCCTGA
TCGCGCACCTGACATCAGCCGCTTCCTGAAGCACTGCCGATGGCTCTTGT
CCCACCATGTCAACCTCGCCATTTTTGGCACCAACTCAGAGGCTAACTCC
ATGACCACCTTCGAGAAGCTTACGTTGCTGCACACCCTCGTCCAAGAGGG
TCGAGTTGATCCCAAGCGCCTCATGCCCGGCACCGGTGCATGTGCCGTGG
CCGATGCCGTTACTCTTTCCAAGGCTGCCGTTAAACTGGGATGTGGCGGT
GTCCTGGTCCTCCCCCCCTTCTACTACAAGAACGTGAGTGACGAGGGTAT
ATACCGATACTTTGCCTCCCTCGTCGACCAGGTCGCTGACTCCAGGCTCC
GAGTCTACTTATACCACATTCCTCAGGTCAGCGGCGTCGGCTGCAGCCAT
GCCCTCATCGAGCGCCTCCTCAAGGACTATCCCGGCGTCATTGCGGGCAT
TAAAGACTCGTCTGGGGATTGGGAGCACACCAAGTCCCTGATCACGCACT
TTGGAAAATGCAAAGGCCAAACCGACGGCGACACTTTCCTCCGAGTCTTC
GCCGGGAGCGAGGCCTTCCTCCTTCGCACCCTTCGAGCGGGAGGACAAGG
TTGCATCTCCGCCACTGCCAACGTAAATCCCTCGGGTATAGTGGAGCTGT
ACCACAAGCACGACTCCGCCCAGGCCGATCGCCTCCAAAAGGAGTGTCAG
CGGGTTAGAGATACCTTCCCCCCCAACGCCCTCGTCCCCTCCATGAAGGC
AGCCCTCGCACACTTCTCACAAGACAAGGAATGGGAGCGCGTCCGTCCGC
CCCTGGTCGAGTTGAAAGCTGAAGAGAAGACCGTTTTGTTACAAGGGCTG
ACACAGGTCAAATTCAAGATGCCGGGTCTTGGCGAATAG
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protein sequence of NO15G00120.1

>NO15G00120.1-protein ID=NO15G00120.1-protein|Name=NO15G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MRGVFAPVLTPFLPGPDRAPDISRFLKHCRWLLSHHVNLAIFGTNSEANS
MTTFEKLTLLHTLVQEGRVDPKRLMPGTGACAVADAVTLSKAAVKLGCGG
VLVLPPFYYKNVSDEGIYRYFASLVDQVADSRLRVYLYHIPQVSGVGCSH
ALIERLLKDYPGVIAGIKDSSGDWEHTKSLITHFGKCKGQTDGDTFLRVF
AGSEAFLLRTLRAGGQGCISATANVNPSGIVELYHKHDSAQADRLQKECQ
RVRDTFPPNALVPSMKAALAHFSQDKEWERVRPPLVELKAEEKTVLLQGL
TQVKFKMPGLGE*
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mRNA from alignment at chr15:27770..30380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G00120.1 ID=NO15G00120.1|Name=NO15G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2611bp|location=Sequence derived from alignment at chr15:27770..30380- (Nannochloropsis oceanica)
ATGCGCGGTGTCTTCGCCCCCGTCCTAACGCCTTTCCTGCCTGGCCCTGA
TCGCGCACCTGACATCAGCCGCTTCCTGAAGCACTGCCGATGGCTCTTGT
CCCACCATGTCAACCTCGCCATTTTTGGCACCAACTCAGGTAAGAGGAAG
CAGGGAGGAGGAAAGGAGGGTAAAGAGGAACATGCCGGGCGTTCCAATTT
ATCATGACCTCATCATTCTCGCCGCCCTCCCTCCCTCGCTCTCCTCCCCT
CTCCTCCCTCCGCCGGTATAGAGGCTAACTCCATGACCACCTTCGAGAAG
CTTACGTTGCTGCACACCCTCGTCCAAGGTACATGCCTGTCACTTTCCTA
CCTTCCCTTCCTCTCTCCCTCCCTTCCTTCTCCCCCTCTCGCTCGCATCT
GGCCAGACCACCTGTCGTTCCTGTCTCCATCTTTTGGCTTCTAAACTTGT
CCTTCCTCCACTACTGCCCCTCCCCTTTCCCAAGCGCTCCTCCTCTTCCT
TCCCTCCCGCCCACCTCACTCTACCGTTTTTCACCTACAGTCTTCAAAAA
TCTCTCGCTCTTAACCCTTTCCTCTCCACCCTCTCTCCCTCGGTCTCGCC
CCCTCTTCCCCTTGTCCTCAGAGGGTCGAGTTGATCCCAAGCGCCTCATG
CCCGGCACCGGTGCATGTGCCGTGGCCGATGCCGTTACTCTTTCCAAGGC
TGCCGTTAAACTGGGGTAGGGAGGAAGGGAAGGAGGAAATGAGGGAGGGA
GGGAGGGAGGGAGGAGGGGAGGGAGGGAGGGAGGAGGGGAGGGAGGGAGA
TGTGCATCGACATACCATCAAGCTCAACAGCCCATGCCTGACTTCGTTCC
TCCCTCCATCCCTCCCTCCCTCCCTCCCTCTCTTCCTCCCTCCCTCCCTC
CCTCCCTCCTTCCCTCGCTTCCTCCCTCCCTCCCTCCCTCCCAAGATGTG
GCGGTGTCCTGGTCCTCCCCCCCTTCTACTACAAGAACGTGAGTGACGAG
GGTATATACCGATACTTTGCCTCCCTCGTCGACCAGGTCGCTGACTCCAG
GTACTTGCTCCCTCCCTCCCTCCCTCCCTCTTTTCCTCCCTTTCTCTAAT
CCAGTCAACCTATTCACCCAATGCCCTCATCCGTTTCCCCCCCTCCCCCC
CTCCCTTCCTCCCTTACCCCCCTCCCTTCCTCCCTTCCCTTCCCTCCCAC
CAGCCTACGCATTTACCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCCCGTTTCTCTCCCTCCGCCCAGGCTCCGAGTCTACTTATACCAC
ATTCCTCAGGTCAGCGGCGTCGGCTGCAGCCATGCCCTCATCGAGCGCCT
CCTCAAGGTAGGGAGGGAGGGAGGGGAAAAAGGTCGGTAGAGCGTTAATA
TAAGGCATGGAAAAACGAGGGAGGGAGGGAGGGAGAGGACGAGCGAGAGG
AATGTCGTCAGAAGAGTACTAACGGAACCAAACAAACGCCATGTGGTGCT
GTATGTCATTGTAGCCATATGACTGGATCCTTCCCTCCCTCCTCCCCTCC
CTTCTTCTCTTCCTTCCCCCCTTCCTAGGACTATCCCGGCGTCATTGCGG
GCATTAAAGACTCGTCTGGGGATTGGGAGCACACCAAGTCCCTGATCACG
CACTTTGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTACTCCCTT
TCATCCCTCTTTCCCTCCCTCCCTCATGGCAGTCCTCGTGCTGATGAGGA
CTTCCTCCGTCGCTTTCTCACGCGCATTTGGATCATACCTAGATGGTAGA
CATTAATTTATGCAATTTGTGCATCCTTCCCTCCCTTCCTCCCTCCCTTC
CTCCCACCCTCCTCCCTCCTTGCTCTCAACAGGAAAATGCAAAGGCCAAA
CCGACGGCGACACTTTCCTCCGAGTCTTCGCCGGGAGCGAGGCCTTCCTC
CTTCGCACCCTTCGAGCGGGAGGACAAGGTTGCATCTCCGCCACTGCCAA
CGTAAATCCCTCGGGTATAGTGGAGGTACGCCTTTCCTCCCTTCCTTTAC
CCCTCTCATTTTTCTCCCTTTTTATTGACGGGGAGGAACTCAATCATGGC
TATCGTTTCAGTGGGCGCTGACTGGCATCGAGTCGTATGTCCATACTCAC
CAATTCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCCAGCTGTAC
CACAAGCACGACTCCGCCCAGGCCGATCGCCTCCAAAAGGAGTGTCAGCG
GGTTAGAGATACCTTCCCCCCCAACGCCCTCGTCCCCTCCATGAAGGCAG
CCCTCGCACACTTCTCACAAGACAAGGAGTAAGGAGGGGGAAAGGGCGAG
GGAAAGGGAGGGAGTGATTTTGGTAGAGGAACGTGCTTCCATTTGTGTTC
TATGGACCACTTCCCATAAGAAATTTGAATTCACACTAACCCAAATCTCT
TCCGGCCAATCACCTCTCCTCTTCCCTCCTTCCTCCCCTTTCCCTCCTCC
AGATGGGAGCGCGTCCGTCCGCCCCTGGTCGAGTTGAAAGCTGAAGAGAA
GACCGTTTTGTTACAAGGGCTGACACAGGTCAAATTCAAGATGCCGGGTC
TTGGCGAATAG
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Coding sequence (CDS) from alignment at chr15:27770..30380-

>NO15G00120.1 ID=NO15G00120.1|Name=NO15G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr15:27770..30380- (Nannochloropsis oceanica)
ATGCGCGGTGTCTTCGCCCCCGTCCTAACGCCTTTCCTGCCTGGCCCTGA
TCGCGCACCTGACATCAGCCGCTTCCTGAAGCACTGCCGATGGCTCTTGT
CCCACCATGTCAACCTCGCCATTTTTGGCACCAACTCAGAGGCTAACTCC
ATGACCACCTTCGAGAAGCTTACGTTGCTGCACACCCTCGTCCAAGAGGG
TCGAGTTGATCCCAAGCGCCTCATGCCCGGCACCGGTGCATGTGCCGTGG
CCGATGCCGTTACTCTTTCCAAGGCTGCCGTTAAACTGGGATGTGGCGGT
GTCCTGGTCCTCCCCCCCTTCTACTACAAGAACGTGAGTGACGAGGGTAT
ATACCGATACTTTGCCTCCCTCGTCGACCAGGTCGCTGACTCCAGGCTCC
GAGTCTACTTATACCACATTCCTCAGGTCAGCGGCGTCGGCTGCAGCCAT
GCCCTCATCGAGCGCCTCCTCAAGGACTATCCCGGCGTCATTGCGGGCAT
TAAAGACTCGTCTGGGGATTGGGAGCACACCAAGTCCCTGATCACGCACT
TTGGAAAATGCAAAGGCCAAACCGACGGCGACACTTTCCTCCGAGTCTTC
GCCGGGAGCGAGGCCTTCCTCCTTCGCACCCTTCGAGCGGGAGGACAAGG
TTGCATCTCCGCCACTGCCAACGTAAATCCCTCGGGTATAGTGGAGCTGT
ACCACAAGCACGACTCCGCCCAGGCCGATCGCCTCCAAAAGGAGTGTCAG
CGGGTTAGAGATACCTTCCCCCCCAACGCCCTCGTCCCCTCCATGAAGGC
AGCCCTCGCACACTTCTCACAAGACAAGGAATGGGAGCGCGTCCGTCCGC
CCCTGGTCGAGTTGAAAGCTGAAGAGAAGACCGTTTTGTTACAAGGGCTG
ACACAGGTCAAATTCAAGATGCCGGGTCTTGGCGAATAG
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Synonyms
Publications