NO14G03230.2, NO14G03230.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G03230.2
Unique NameNO14G03230.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1213
Alignment locationchr14:965646..968165 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:965646..968165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G03230.2 vs.
Match: EWM24481.1 (Protein of unknown function DUF1997 [Nannochloropsis gaditana])

HSP 1 Score: 157.9 bits (398), Expect = 5.000e-35
Identity = 69/114 (60.53%), Postives = 98/114 (85.96%), Query Frame = 0 
Query:  157 MAPIQFFSASIIPVIDIRLEVDAKAGTAIIHAVSGKIKRSDQPVNLEEARANGYVHTGSGHFDEMSFKMNTINNVRWQQIDEKTIKISSELQMEVSMDKPGWLLVPSSMVGRKG 271
            MAPIQFF+ASI+PV+D+RL VDA AGTA+I A+SG++K S +P++L+EA+  GYVHTG G FDE+SF+M+T N V WQ++D++T+ ++S ++ME+SM+KPGW+LVPSSM+ R G
Sbjct:    1 MAPIQFFTASIVPVVDVRLTVDAVAGTAVIRAISGQVKHSTKPLDLKEAQEAGYVHTGPGRFDELSFQMDTTNIVSWQKVDDRTVALTSRIEMEISMEKPGWMLVPSSMMNRVG 114
The following BLAST results are available for this feature:
BLAST of NO14G03230.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24481.15.000e-3560.53Protein of unknown function DUF1997 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G03230NO14G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G03230.2NO14G03230.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G03230.2.cds1NO14G03230.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03230.2.cds2NO14G03230.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03230.2.cds3NO14G03230.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03230.2.cds4NO14G03230.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03230.2.cds5NO14G03230.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03230.2.cds6NO14G03230.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03230.2.cds7NO14G03230.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03230.2.cds8NO14G03230.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03230.2.cds9NO14G03230.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G03230.2 ID=NO14G03230.2|Name=NO14G03230.2|organism=Nannochloropsis oceanica|type=mRNA|length=1213bp
AAAAATAGGGCCCGAAAGCGTCGCAGCGTCGTAATGAAATCCACGCCACA
AGGAGATCCGCCACCACGCGCACTCCTTCCCGGTCTTTCTTCGTTGCCCA
GGCCACCACTCTACGTGCGTCATCTCGTTTTTGTCTTTCTCCTCGTCCTC
ATCGCGGGGACAGTGGAAGCAGGGTGGCTGGGGTCTATCTTCGGAAGGAA
GGATAAGCAGCAGGCGGCGACCGTAACCCAAGGTTGCGCGAGCGTCGAGA
TGTGCGAAGCGGTGCTGCTGGCGGGCAGCAACAGCGAAGGGAAGGAGCAG
GAGGCTGTCGATGCGGAAAGCAAGCTCTTGTCCCCGTCTGTGCGCACCGT
TTTTAAGGCGAAGCAGACGCAGTCAATCCAAGTCCAGGTCCATGGAAGCA
AGAGGGCCCTCCATGACTACTTCCTCTCTCTCGACGCCCGACCCCATATC
CTCAATGCCGACAATTTCGAGCAGATAAGTGCCGACACCTTTCGGTGCGA
AATGGCGCCAATACAATTCTTTTCCGCCTCCATCATTCCCGTCATCGACA
TCAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCACGCGGTA
TCGGGCAAGATCAAACGGAGCGACCAGCCAGTGAACCTCGAAGAAGCGCG
TGCAAATGGCTACGTACATACAGGCTCGGGTCACTTCGATGAAATGTCCT
TCAAGATGAACACCATCAATAACGTCCGCTGGCAACAGATCGACGAGAAG
ACGATCAAGATCAGCTCGGAGCTGCAGATGGAGGTCAGCATGGACAAGCC
CGGGTGGCTTTTGGTACCGTCCTCGATGGTAGGGAGGAAAGGAGGGAGGG
AGAGATGGAGGGAAAGAGAGGAAGGTATTCTTGTCTCCTCTTTCGCGTCG
GGCACCATGACACATCCACCAACAAACATTCTTCTTCCCTCCCTTCCTCT
CTCCCTGTGCAGATGAATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGT
TAAAAAGACGTTACCCGAGTTCTTGCAACGGATCCAAAATGGCTATGCAC
TGTGGGCAGGAGGAGAGGTGGTGGTATAAGGAGATGCACGGAAAGGAGGG
GGACGAGAGGAGGGAGAGAGAAGGGAATGTGGATATATACTTAGCAAAAA
CTAGATAGGAAGTTTTAGATTTCATTACAGTATTAAATTTATCGAAAAAA
GAACCAATGTACG
back to top

protein sequence of NO14G03230.2

>NO14G03230.2-protein ID=NO14G03230.2-protein|Name=NO14G03230.2|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MKSTPQGDPPPRALLPGLSSLPRPPLYVRHLVFVFLLVLIAGTVEAGWLG
SIFGRKDKQQAATVTQGCASVEMCEAVLLAGSNSEGKEQEAVDAESKLLS
PSVRTVFKAKQTQSIQVQVHGSKRALHDYFLSLDARPHILNADNFEQISA
DTFRCEMAPIQFFSASIIPVIDIRLEVDAKAGTAIIHAVSGKIKRSDQPV
NLEEARANGYVHTGSGHFDEMSFKMNTINNVRWQQIDEKTIKISSELQME
VSMDKPGWLLVPSSMVGRKGGRERWREREEGILVSSFASGTMTHPPTNIL
LPSLPLSLCR*
back to top

mRNA from alignment at chr14:965646..968165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G03230.2 ID=NO14G03230.2|Name=NO14G03230.2|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp|location=Sequence derived from alignment at chr14:965646..968165- (Nannochloropsis oceanica)
AAAAATAGGGCCCGAAAGCGTCGCAGCGTCGTAATGAAATCCACGCCACA
AGGAGATCCGCCACCACGCGCACTCCTTCCCGGTCTTTCTTCGTTGCCCA
GGCCACCACTCTACGTGCGTCATCTCGTTTTTGTCTTTCTCCTCGTCCTC
ATCGCGGGGACAGTGGAAGCAGGGTGGCTGGGGTCTATCTTCGGAAGGAA
GGATAAGCAGCAGGTATGGTGGGAAGGAAGGATGAGAGGGTGTGTGTCGG
CAGCTTCGGGGAGCGAGCTTGGCCGGAAAGCTAGAAGGGAGGGAGGAAGG
ACCGTAAAGTAATATGAATATTTATAAATGTATGTGGCCCACCTGTCATC
CAACGACATGCCATGCCACTTCTCATCCAAAACGATGCATGCTACAGGCG
GCGACCGTAACCCAAGGTTGCGCGAGCGTCGAGATGTGCGAAGCGGTGCT
GCTGGCGGGCAGCAACAGCGAAGGGAAGGAGCAGGAGGCTGTCGATGGTA
AGGGACGAGGAAGGGGATGAGGAGGGAAGGAAGGGGGCGAGAGGAACAGA
CGGAAGGAGGGCAGGAAGGGCGTATGAAAGAAGACTCAGAATGTCACCGT
CAACGTGGATAAAGATGACGTGAAGGGAAAGTAGCTAGTGAACGGAGGGG
GGGGAAAGGAGGGAGGGAGGGAGGGGTCAAAACTTCGACCCCGGCGATGG
ACACAGTCTCACTCTTCCTTTCTCGTCCCTGCCCTCCCCCTTTCTTTCCG
ACCCAGCGGAAAGCAAGCTCTTGTCCCCGTCTGTGCGCACCGTTTTTAAG
GCGAAGCAGACGCAGTCAATCCAAGTCCAGGGTAAAGGGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGAGGTTGACGAGATGTGGGATTGATG
GAATTCTGCATTTTCGAGCGTTCTTTCAGTCTGGATTCCCTGCTTGTGTT
TCACGAACCGACCTTCCCTCCCTCCCTCCCTCCCCCCCTCCCCCCTTCCC
TCAGTCCATGGAAGCAAGAGGGCCCTCCATGACTACTTCCTCTCTCTCGA
CGCCCGACCCCATATCCTCAATGCCGACAATTTCGAGCAGGTACATACCG
TCGTGCCCTCCCTCCCTCCCTCCCTCCCCCTCTCCCACCCTAGATGGCTG
TTGTGCTCTCTAACTTGACCACTCACCCCCCCCCCTCCCCCCGCAGATAA
GTGCCGACACCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCC
TCCATCATTCCCGTCATCGACATCAGGCAAGTCTTCGTCCCTCCCTCCCT
CCCTCTCTCCCTGTTTTCCCCCCACTATCATGGCTTGCTCACCTCCCGCC
CTTCTTCCCTCCCTCCCTCCTCTCTTAGACTTGAAGTCGATGCAAAGGCG
GGCACCGCAATTATCCACGCGGTATCGGGCAAGGTAACACCCTGTCTCCC
TCCCTTCTTCCCTCCCTCTCTCTCTCCTTTCCTCTCTCCCTCCCTTCCCC
CACTTCATGCAGTATGCTCATCCTTCCTTTTTCTCCCTCCCTCCATCCCT
CCCTCCCTCCTTTTTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAG
ATCAAACGGAGCGACCAGCCAGTGAACCTCGAAGAAGCGCGTGCAAATGG
CTACGTACATACAGGTGCCCTCCCTTTCTCTCTTCCTCCCTCCCTCCCTT
CCTCCCTCCCTCCCTTTTTCTTGTCCAGCAACTCACCCCTCGTTCCCCAT
CCCTCCCTTCTTTAGTCCCTGTTCTAGACCCACCTACTTATCCCTCCCTC
CCTCCCTCCCTCCCTCTCTTTCTCGACAGGCTCGGGTCACTTCGATGAAA
TGTCCTTCAAGATGAACACCATCAATAACGTCCGCTGGCAACAGGTGAGT
GCCCTCCCACCCGCCCTCCCTCCCTCCTTCCCTTCCTCCCTCCCTCTCTC
CTTCCCTCTCCGATCTTCTCGCTCCGCCTGAAGGGTCTCACCTCATCCTC
CCTCCCTCCCTCTTTCCTTCCCTCCCTCCCTCCTCCCTCCCGTAGATCGA
CGAGAAGACGATCAAGATCAGCTCGGAGCTGCAGATGGAGGTCAGCATGG
ACAAGCCCGGGTGGCTTTTGGTACCGTCCTCGATGGTAGGGAGGAAAGGA
GGGAGGGAGAGATGGAGGGAAAGAGAGGAAGGTATTCTTGTCTCCTCTTT
CGCGTCGGGCACCATGACACATCCACCAACAAACATTCTTCTTCCCTCCC
TTCCTCTCTCCCTGTGCAGATGAATCGCGTGGGCTCTCTCATTTTGCAGC
GAGTCGTTAAAAAGACGTTACCCGAGTTCTTGCAACGGATCCAAAATGGC
TATGCACTGTGGGCAGGAGGAGAGGTGGTGGTATAAGGAGATGCACGGAA
AGGAGGGGGACGAGAGGAGGGAGAGAGAAGGGAATGTGGATATATACTTA
GCAAAAACTAGATAGGAAGTTTTAGATTTCATTACAGTATTAAATTTATC
GAAAAAAGAACCAATGTACG
back to top

Coding sequence (CDS) from alignment at chr14:965646..968165-

>NO14G03230.2 ID=NO14G03230.2|Name=NO14G03230.2|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr14:965646..968165- (Nannochloropsis oceanica)
ATGAAATCCACGCCACAAGGAGATCCGCCACCACGCGCACTCCTTCCCGG
TCTTTCTTCGTTGCCCAGGCCACCACTCTACGTGCGTCATCTCGTTTTTG
TCTTTCTCCTCGTCCTCATCGCGGGGACAGTGGAAGCAGGGTGGCTGGGG
TCTATCTTCGGAAGGAAGGATAAGCAGCAGGCGGCGACCGTAACCCAAGG
TTGCGCGAGCGTCGAGATGTGCGAAGCGGTGCTGCTGGCGGGCAGCAACA
GCGAAGGGAAGGAGCAGGAGGCTGTCGATGCGGAAAGCAAGCTCTTGTCC
CCGTCTGTGCGCACCGTTTTTAAGGCGAAGCAGACGCAGTCAATCCAAGT
CCAGGTCCATGGAAGCAAGAGGGCCCTCCATGACTACTTCCTCTCTCTCG
ACGCCCGACCCCATATCCTCAATGCCGACAATTTCGAGCAGATAAGTGCC
GACACCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCAT
CATTCCCGTCATCGACATCAGACTTGAAGTCGATGCAAAGGCGGGCACCG
CAATTATCCACGCGGTATCGGGCAAGATCAAACGGAGCGACCAGCCAGTG
AACCTCGAAGAAGCGCGTGCAAATGGCTACGTACATACAGGCTCGGGTCA
CTTCGATGAAATGTCCTTCAAGATGAACACCATCAATAACGTCCGCTGGC
AACAGATCGACGAGAAGACGATCAAGATCAGCTCGGAGCTGCAGATGGAG
GTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCTCGATGGTAGG
GAGGAAAGGAGGGAGGGAGAGATGGAGGGAAAGAGAGGAAGGTATTCTTG
TCTCCTCTTTCGCGTCGGGCACCATGACACATCCACCAACAAACATTCTT
CTTCCCTCCCTTCCTCTCTCCCTGTGCAGATGA
back to top
Synonyms
Publications