NO14G03200.2, NO14G03200.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G03200.2
Unique NameNO14G03200.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1191
Alignment locationchr14:957845..959357 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:957845..959357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G03200.2 vs.
Match: EWM24485.1 (Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich [Nannochloropsis gaditana])

HSP 1 Score: 234.2 bits (596), Expect = 3.100e-58
Identity = 117/164 (71.34%), Postives = 139/164 (84.76%), Query Frame = 0 
Query:    6 EGVRSHALFGGAITFTLPASFANVSEIRQVPDNQEVFVDQSSDASLILELLELERGKEGLEAAKYFFCDLAEHNEAQAANIQFQADMSKTGVVPHLDAYPTYCLIGTQSISKFHTPSAAHQSVRIYLVNVRLQQTGTDLVLTLNLPPSAQAPAAAEFSQTLFIQ 170
            E VRSHALFGGAIT +LPASF++ S+IRQVPDNQEVF+D +SDASLILELL+LER KEGLEAA YFF DLAEHN+AQ A IQ++ D+S T +VP+L AYPTY L+GTQ++SKFH   AA   VRIYLVNVRLQQTGTD++LTLNLP  AQAPAAA F+  +F++
Sbjct:   10 EKVRSHALFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERDKEGLEAATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAAMFVK 173
The following BLAST results are available for this feature:
BLAST of NO14G03200.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24485.13.100e-5871.34Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G03200NO14G03200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G03200.2NO14G03200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G03200.2.cds1NO14G03200.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03200.2.cds2NO14G03200.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03200.2.cds3NO14G03200.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G03200.2.cds4NO14G03200.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G03200.2 ID=NO14G03200.2|Name=NO14G03200.2|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
CAGGCACGAATCCCGTTCCTCAGGCAAATAAGGAAACGGTTGCTGCTATG
ACCGGGGCAGAGGAAGGAGTCCGATCCCACGCCCTATTCGGCGGTGCCAT
CACATTCACCCTGCCCGCCTCGTTTGCAAACGTCAGCGAGATTCGCCAGG
TACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCACTT
ATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGCCGC
AAAATACTTTTTCTGTGACCTTGCCGAGCACAACGAAGCCCAGGCCGCGA
ACATTCAGTTTCAAGCGGACATGAGCAAAACCGGGGTCGTGCCGCATTTA
GATGCCTACCCAACCTACTGTCTTATCGGCACACAAAGTATCTCCAAGTT
CCACACGCCCAGTGCGGCACATCAATCTGTGCGTATCTATCTTGTCAATG
TGCGCTTGCAACAGACGGGCACGGACCTCGTTCTAACCCTCAACTTGCCC
CCATCGGCACAAGCACCCGCCGCCGCCGAATTTAGCCAGACCTTGTTCAT
CCAGGTAGGTAAGTCTCTTGAGAGATGAAGGAATCGGGAGCGACATATCT
GGTGGGCATATGTCAATCTTTACATACTTATATGGTACAGAAGCACAATT
CAAAACCACAGGCTAAGTTTTATTTACATTCCCCACAAAATATTTAGGGC
GGGCCTTGCCCAGACCCGGCTGTGGCAGCATTACAGGAAGCACTGACAAG
CCTCAAGGTTACAAATTGGGGACTGTTTGTTTGAAAAATGAGCAGCGGAA
AGTATAAATCAGTCATCCGGGAAGAAATATAGACTGCCGTAGGAAATAAA
ACATAAATGAAAGACACGCATTGAGTCCCCGCTCTTGAATTTTCCTGATT
TATTAAAATAGCAATATTTCCCCGGCAAATAGAATTGGATATACATCGAG
TGTGCCGATTTTTGTAGTCCCCTAGCACCTGAAATATATCCGGCATGTGC
CGGCAAGGACCTGGTTACGCGTGTTGTAGGAGGTTTTGGTGGCGATCCCC
CCACCCAAATCATCTTGACACAGTCTCCCCCACCTGACTCGCAAATGGTT
ATCGATTACCCGTTTAGATGTTTCGATGATTTTAGAGGCTTAACCATTGT
CAATATCGAACTCACAAAAGAACCAATCCATAATCAATCAA
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protein sequence of NO14G03200.2

>NO14G03200.2-protein ID=NO14G03200.2-protein|Name=NO14G03200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MTGAEEGVRSHALFGGAITFTLPASFANVSEIRQVPDNQEVFVDQSSDAS
LILELLELERGKEGLEAAKYFFCDLAEHNEAQAANIQFQADMSKTGVVPH
LDAYPTYCLIGTQSISKFHTPSAAHQSVRIYLVNVRLQQTGTDLVLTLNL
PPSAQAPAAAEFSQTLFIQVGKSLER*
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mRNA from alignment at chr14:957845..959357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G03200.2 ID=NO14G03200.2|Name=NO14G03200.2|organism=Nannochloropsis oceanica|type=mRNA|length=1513bp|location=Sequence derived from alignment at chr14:957845..959357- (Nannochloropsis oceanica)
CAGGCACGAATCCCGTTCCTCAGGCAAATAAGGAAACGGTTGCTGCTATG
ACCGGGGCAGAGGAAGGTACGTGCAAATGCGGATTATGCCGCTCGTATCA
TTTCCTCTCCAAGAACCTCCCCACCATCCCCACAGGAGTCCGATCCCACG
CCCTATTCGGCGGTGCCATCACATTCACCCTGCCCGCCTCGTTTGCAAAC
GTCAGGTAAGTAAATTTTACCTGTTGGTTGTGGTCTTCGCACTTCGTGCT
CTCTTCCTGGTACAATCTAAGGGCTAGGGTGACAGACTCGTAGGCCCCTC
CCTGACAGTCACACATAATATATACCATCCCTTTTGCAGCGAGATTCGCC
AGGTACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCA
CTTATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGT
ATGTGTCTGTAAGGTACCGAACAGGGAGGGAGTGTAGTGGCGTATGCGTG
ATTTCACTGCCTGTGAGTCCTCCACCTCGAGCCTCTACACAATTAATCCT
TATCCTTTATTAAATAGGCCGCAAAATACTTTTTCTGTGACCTTGCCGAG
CACAACGAAGCCCAGGCCGCGAACATTCAGTTTCAAGCGGACATGAGCAA
AACCGGGGTCGTGCCGCATTTAGATGCCTACCCAACCTACTGTCTTATCG
GCACACAAAGTATCTCCAAGTTCCACACGCCCAGTGCGGCACATCAATCT
GTGCGTATCTATCTTGTCAATGTGCGCTTGCAACAGACGGGCACGGACCT
CGTTCTAACCCTCAACTTGCCCCCATCGGCACAAGCACCCGCCGCCGCCG
AATTTAGCCAGACCTTGTTCATCCAGGTAGGTAAGTCTCTTGAGAGATGA
AGGAATCGGGAGCGACATATCTGGTGGGCATATGTCAATCTTTACATACT
TATATGGTACAGAAGCACAATTCAAAACCACAGGCTAAGTTTTATTTACA
TTCCCCACAAAATATTTAGGGCGGGCCTTGCCCAGACCCGGCTGTGGCAG
CATTACAGGAAGCACTGACAAGCCTCAAGGTTACAAATTGGGGACTGTTT
GTTTGAAAAATGAGCAGCGGAAAGTATAAATCAGTCATCCGGGAAGAAAT
ATAGACTGCCGTAGGAAATAAAACATAAATGAAAGACACGCATTGAGTCC
CCGCTCTTGAATTTTCCTGATTTATTAAAATAGCAATATTTCCCCGGCAA
ATAGAATTGGATATACATCGAGTGTGCCGATTTTTGTAGTCCCCTAGCAC
CTGAAATATATCCGGCATGTGCCGGCAAGGACCTGGTTACGCGTGTTGTA
GGAGGTTTTGGTGGCGATCCCCCCACCCAAATCATCTTGACACAGTCTCC
CCCACCTGACTCGCAAATGGTTATCGATTACCCGTTTAGATGTTTCGATG
ATTTTAGAGGCTTAACCATTGTCAATATCGAACTCACAAAAGAACCAATC
CATAATCAATCAA
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Coding sequence (CDS) from alignment at chr14:957845..959357-

>NO14G03200.2 ID=NO14G03200.2|Name=NO14G03200.2|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr14:957845..959357- (Nannochloropsis oceanica)
ATGACCGGGGCAGAGGAAGGAGTCCGATCCCACGCCCTATTCGGCGGTGC
CATCACATTCACCCTGCCCGCCTCGTTTGCAAACGTCAGCGAGATTCGCC
AGGTACCAGACAATCAAGAAGTCTTTGTAGACCAAAGTTCGGACGCGTCA
CTTATCCTAGAATTGCTGGAGCTGGAGCGGGGCAAGGAGGGCCTTGAGGC
CGCAAAATACTTTTTCTGTGACCTTGCCGAGCACAACGAAGCCCAGGCCG
CGAACATTCAGTTTCAAGCGGACATGAGCAAAACCGGGGTCGTGCCGCAT
TTAGATGCCTACCCAACCTACTGTCTTATCGGCACACAAAGTATCTCCAA
GTTCCACACGCCCAGTGCGGCACATCAATCTGTGCGTATCTATCTTGTCA
ATGTGCGCTTGCAACAGACGGGCACGGACCTCGTTCTAACCCTCAACTTG
CCCCCATCGGCACAAGCACCCGCCGCCGCCGAATTTAGCCAGACCTTGTT
CATCCAGGTAGGTAAGTCTCTTGAGAGATGA
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Synonyms
Publications