NO14G02920.2, NO14G02920.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02920.2
Unique NameNO14G02920.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2623
Alignment locationchr14:864206..867611 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:864206..867611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02920.2 vs.
Match: PRP77917.1 (hypothetical protein PROFUN_08451 [Planoprotostelium fungivorum])

HSP 1 Score: 166.8 bits (421), Expect = 1.100e-37
Identity = 138/287 (48.08%), Postives = 174/287 (60.63%), Query Frame = 0 
Query:   13 PQPQQPPQQPPFQAGPNPLFGGFPGMGGVGGMGAGFPTPQQQQQMQQQLMQNPEMMDQMMQSPLMQQMMSSPELMRSLMMANPQMRALLDANPQLNHILSDPAMLRQAMETARNPAAREQMMRSNDLAMSQIENHPEGFNALRRMYHEIQEPMMDA--IGNSGATDASSSSSSSSGTTNSTISGSRPNTNALPNPWASAASASSSAPPSLPPPSGGAAPVPFLPMFPPQQQPGQQQQQQPGGQAPLANPFAAMMG----GGMGG-GMGGGMG--GGMGGGPGAMPGM 291
            P P Q   QPP  + P   FG   G+GG+GG+G G      QQQMQQQ+MQNP MM +MM SP++Q ++S+PEL+RS++ +NPQMR +++ NP++ H L+DPA LRQ  E ARNP    +MMRS D AMS IE+HPEGFN LRRMY ++QEP+M+A   GN  A  ASSS++S   +TN       PNT  LPNPW SA ++  +A PS    S  A P     +F        QQ  Q       ANPFA+M G    GG+GG G  GGMG  GGM   P  M  M
Sbjct:   91 PTPTQ--SQPPLNSNPFGAFGSMGGLGGLGGLG-GLGGNMNQQQMQQQMMQNPAMMQEMMNSPMVQSLLSNPELVRSIINSNPQMREIIERNPEVGHALNDPATLRQTFEMARNPDLMREMMRSTDRAMSNIESHPEGFNLLRRMYTDVQEPLMNAATAGNQPAAGASSSTTSQPASTN-------PNTAPLPNPWNSAGNSQPAAAPS--TTSQNANPFANFNLFDAAATAEGQQTGQND-----ANPFASMFGAQGMGGLGGIGGLGGMGGMGGMNMDPAQMTAM 360
The following BLAST results are available for this feature:
BLAST of NO14G02920.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PRP77917.11.100e-3748.08hypothetical protein PROFUN_08451 [Planoprotosteli... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02920NO14G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02920.2NO14G02920.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02920.2.cds1NO14G02920.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02920.2.cds2NO14G02920.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02920.2.cds3NO14G02920.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02920.2.cds4NO14G02920.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02920.2.cds5NO14G02920.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02920.2.cds6NO14G02920.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02920.2 ID=NO14G02920.2|Name=NO14G02920.2|organism=Nannochloropsis oceanica|type=mRNA|length=2623bp
CTTAGGATGGGCCTTTTACTTATTTTTATTTGCGTTTGCTCTTAATCCTC
GAAAGGGTTGGCTGCCATCGACATTTATCGCAAACTCCGGACCATGTATG
GGGCTCGGGAGTCCTGCCTGAGCAAAGCTTGGACAGGTCCTCCCTCGAAA
ACATCCTCGCCCTTCTCCTCCAGCAGCCTTTCCATCAACTCTTTATTTCG
CACTTTCATAATATCCTCAAGCCTGAACACCTGAATAACTGTCGGGTAGT
AAATGATTGACCAGGATTCCCTTTCAGGCATGAGGCCTCTCTCACTATCA
GCACTCATCTGCTGCTGCAGGTGCGCCTTTTTCATGCACATGAATTTCAT
ACTCCCTTCCCCTGCCGCCCCCGCCCGCACAATACTCCCCACTTCTGTTC
CCTGGCATGGCTGGTATCGACACTTGAGGCTCGTATGCCGGCTGGTGGGT
TCACATTTCTCATTAATATCACATTGTGCATTGCGATCACTCCAGAACTC
CTGAGGCAAGATTCAGCAAAAAATCGGGATAAAAGATTTACGGTAGCTCT
AAAAATAAAGCGCACAAATAACTCACGCACAAGCCTGTCTTAGTAAAGTC
CCACTGTAACATCGGGGCTGCGTAGAGCCCAAGGCCCTTTTTTGTAAAGC
CAGCAACTCATAACGGCTTTTCAGCTTGTCCGGGGTCCGGGGAACAATCG
AAGTCTGAGAGCCTTTTTGTTGCTTGGCCATGTGGAAGCACAAGCATGTG
CCCCCAACTGTAATCTGCCCGCGCTGGTCTGCAACAGAGAGAACTGGCCT
TGGCACCACGCTGGGACAATGGGGTTCGCAGTGTCCTTGAAGTAGCCCAA
CTATGATGTGCGTCATTTTGGAGCTGAGATGAGCGTGTGCTGGCTTCTAG
GCCTTTTGTCACACTTACCCCATCCCCTCTATGACCCCTTTATCCCCAAT
CACAGACACATACCACCTCTGAGTGGCAAGGATGGCACCCATCACTGTCC
ACGTCAAGTGCGCCAACGCCAAGAAGTACACGGTCACGGTGGAAAGTGAT
CTCAAGGTCCCCGACCTGAAGGTAAGAGGAAGGGGAGGGAGGAGGGAGAG
AGACGTGTGTAAATGCGTGAGGGCAAGAGCACAGTTTGGCTTCTCATGAA
GTATAAGATATCACTTTTGAGCTATAGGTTTGCGAATGTGAGTGCAAGAA
AGAGACGGAAGGGGGAAGAGGGATTGGAGAGTGGAGTGACCCCGGCACAA
CGCAATAGCACGAAGCTGCACTAGGTAGAGATTAGAGATGTCTGGGTCAT
TCCTTCCAACGCATGCATTTATATACCTGCATGTCAAGGCGGTCTCACCA
CTGAAAGACTGAAAGACCGAAAAGGGGACCCGTACACTCACACACCCCTC
CTCCCCTCCCACCACGTCGTCCTCGCCTCCTACAGGCGGCCATCGAAACG
GCCTCGGAAATCCCCGCCGTGCAACAACGCCTCATCCACAAGGGTAAGGT
CCTCAAGGACGAGGAAGCCCTCTCTTCCTACTCCATCGAGGACGAGTCAA
CAGTCCACCTCGTCCGGGCCTCTTCTTCTACCCCATCCTCTGCCTCTCCC
TCCCCCTCTTTGGCAGCTGCAGCCGCTGCTTCTTCCGCCCCCACTGCCAC
CAACATTCCTACTGCCACCCCTGTCTATACACCGACTCCCGGCAACCCCT
TTGCCGCCATGATGGGAGGAATGATGGGGGGTATGCCAGGACAGCCGCAG
CCGCAGCAGCCGCCGCAGCAGCCGCCGTTTCAAGCGGGTCCGAACCCCCT
GTTCGGAGGCTTCCCGGGGATGGGGGGGGTGGGGGGGATGGGTGCTGGCT
TTCCGACGCCTCAGCAACAGCAGCAGATGCAGCAGCAGTTGATGCAGAAC
CCTGAGATGATGGACCAGATGATGCAGTCGCCGTTGATGCAACAAATGAT
GAGCTCGCCTGAACTCATGCGCAGCCTTATGATGGCCAATCCTCAGATGC
GCGCCCTCCTCGACGCCAACCCTCAACTGAACCACATCCTCAGCGACCCG
GCGATGCTTCGTCAGGCCATGGAAACTGCCCGCAATCCCGCCGCACGCGA
ACAAATGATGCGGAGCAACGACCTGGCCATGTCCCAGATCGAGAACCATC
CCGAGGGTTTCAATGCCCTAAGGCGGATGTATCACGAGATCCAAGAGCCC
ATGATGGACGCCATAGGGAACAGCGGTGCAACCGACGCCAGCAGCAGCAG
CAGCAGCAGCAGTGGCACGACAAACAGCACTATCTCCGGCTCTCGTCCCA
ACACGAACGCCCTTCCCAACCCCTGGGCCTCGGCCGCCTCCGCCTCCTCC
TCCGCCCCTCCCTCCCTCCCGCCTCCCTCGGGAGGCGCAGCGCCCGTGCC
GTTTCTTCCCATGTTTCCTCCGCAGCAGCAGCCGGGACAGCAGCAGCAGC
AGCAGCCGGGTGGGCAGGCGCCCTTAGCGAACCCATTCGCGGCGATGATG
GGCGGAGGGATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGGATGGG
CGGAGGACCGGGGGCGATGCCGGGTATGCCAGGCGCCCCCCCCCCGACAT
GGAGCAAGTCCTACAGACGATGA
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protein sequence of NO14G02920.2

>NO14G02920.2-protein ID=NO14G02920.2-protein|Name=NO14G02920.2|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MMGGMMGGMPGQPQPQQPPQQPPFQAGPNPLFGGFPGMGGVGGMGAGFPT
PQQQQQMQQQLMQNPEMMDQMMQSPLMQQMMSSPELMRSLMMANPQMRAL
LDANPQLNHILSDPAMLRQAMETARNPAAREQMMRSNDLAMSQIENHPEG
FNALRRMYHEIQEPMMDAIGNSGATDASSSSSSSSGTTNSTISGSRPNTN
ALPNPWASAASASSSAPPSLPPPSGGAAPVPFLPMFPPQQQPGQQQQQQP
GGQAPLANPFAAMMGGGMGGGMGGGMGGGMGGGPGAMPGMPGAPPPTWSK
SYRR*
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mRNA from alignment at chr14:864206..867611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02920.2 ID=NO14G02920.2|Name=NO14G02920.2|organism=Nannochloropsis oceanica|type=mRNA|length=3406bp|location=Sequence derived from alignment at chr14:864206..867611+ (Nannochloropsis oceanica)
CTTAGGATGGGCCTTTTACTTATTTTTATTTGCGTTTGCTCTTAATCCTC
GAAAGGGTTGGCTGCCATCGACATTTATCGCAAACTCCGGACCATGTATG
GGGCTCGGGAGTCCTGCCTGAGCAAAGCTTGGACAGGTCCTCCCTCGAAA
ACATCCTCGCCCTTCTCCTCCAGCAGCCTTTCCATCAACTCTTTATTTCG
CACTTTCATAATATCCTCAAGCCTGAACACCTGAATAACTGTCGGGTAGT
AAATGATTGACCAGGATTCCCTTTCAGGCATGAGGCCTCTCTCACTATCA
GCACTCATCTGCTGCTGCAGGTGCGCCTTTTTCATGCACATGAATTTCAT
ACTCCCTTCCCCTGCCGCCCCCGCCCGCACAATACTCCCCACTTCTGTTC
CCTGGCATGGCTGGTATCGACACTTGAGGCTCGTATGCCGGCTGGTGGGT
TCACATTTCTCATTAATATCACATTGTGCATTGCGATCACTCCAGAACTC
CTGAGGCAAGATTCAGCAAAAAATCGGGATAAAAGATTTACGGTAGCTCT
AAAAATAAAGCGCACAAATAACTCACGCACAAGCCTGTCTTAGTAAAGTC
CCACTGTAACATCGGGGCTGCGTAGAGCCCAAGGCCCTTTTTTGTAAAGC
CAGCAACTCATAACGGCTTTTCAGCTTGTCCGGGGTCCGGGGAACAATCG
AAGTCTGAGAGCCTTTTTGTTGCTTGGCCATGTGGAAGCACAAGCATGTG
CCCCCAACTGTAATCTGCCCGCGCTGGTCTGCAACAGAGAGAACTGGCCT
TGGCACCACGCTGGGACAATGGGGTTCGCAGTGTCCTTGAAGTAGCCCAA
CTATGATGTGCGTCATTTTGGAGCTGAGATGAGCGTGTGCTGGCTTCTAG
GCCTTTTGTCACACTTACCCCATCCCCTCTATGACCCCTTTATCCCCAAT
CACAGACACATACCACCTCTGAGTGGCAAGGATGGCACCCATCACTGTCC
ACGTCAAGTGCGCCAACGCCAAGAAGTACACGGTCACGGTGGAAAGTGAT
CTCAAGGTCCCCGACCTGAAGGTAAGAGGAAGGGGAGGGAGGAGGGAGAG
AGACGTGTGTAAATGCGTGAGGGCAAGAGCACAGTTTGGCTTCTCATGAA
GTATAAGATATCACTTTTGAGCTATAGGTTTGCGAATGTGAGTGCAAGAA
AGAGACGGAAGGGGGAAGAGGGATTGGAGAGTGGAGTGACCCCGGCACAA
CGCAATAGCACGAAGCTGCACTAGGTAGAGATTAGAGATGTCTGGGTCAT
TCCTTCCAACGCATGCATTTATATACCTGCATGTCAAGGCGGTCTCACCA
CTGAAAGACTGAAAGACCGAAAAGGGGACCCGTACACTCACACACCCCTC
CTCCCCTCCCACCACGTCGTCCTCGCCTCCTACAGGCGGCCATCGAAACG
GCCTCGGAAATCCCCGCCGTGCAACAACGCCTCATCCACAAGGGTAAGGT
CCTCAAGGACGAGGAAGCCCTCTCTTCCTACTCCATCGAGGACGAGTCAA
CAGTCCACCTCGTCCGGGCCTCTTCTTCTACCCCATCCTCTGCCTCTCCC
TCCCCCTCTTTGGCAGCTGCAGCCGCTGCTTCTTCCGCCCCCACTGCCAC
CAACATTCCTACTGCCACCCCTGTCTATACACCGACTCCCGGCAACCCCT
TTGCCGCCATGATGGGAGGAATGATGGGGGGTATGCCAGGACAGCCGCAG
CCGCAGCAGCCGCCGCAGCAGCCGCCGTTTCAAGCGGGTCCGAACCCCCT
GTTCGGAGGCTTCCCGGGGATGGGGGGGGTGGGGGGGATGGGTGCTGGCT
TTCCGACGCCTCAGCAACAGCAGCAGATGCAGCAGCAGTTGATGCAGGTG
AGGACAAGGAGGGAGGGAAGGAGGGACCGAAGGAAGGAGGGCTGGGGGGG
GCGTTGTCAAAAGCAGTCCGTGCTCACATTGTCCCTCCCTCCCTCCCTTC
CGTCCTCCCTCCCTCCCACATCCTTCTAGAACCCTGAGATGATGGACCAG
ATGATGCAGTCGCCGTTGATGCAACAAATGATGAGCTCGCCTGAACTCAT
GCGCAGCCTTATGATGGCCAATCCTCAGGTATGCACGCCCCCCTCCCTCC
CCCCCTCCCTCCCCCCTCCCTCCTTGCTTCGTCTCGTTTTGATGTTTGCT
CACATCGGGATAGGCAACATTCAGAAAGGGCTCCTCCTTTCTCCTTCCTG
TCCTTCTCTGCCTCTTTCCTCATCACCGTACTCTACCCTCCTCCCTTTCC
TCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGATGCGCGCCCTCCT
CGACGCCAACCCTCAACTGAACCACATCCTCAGCGACCCGGCGATGCTTC
GTCAGGCCATGGAAACTGCCCGCAATCCCGCCGCACGCGAACAAATGATG
CGGAGCAACGTACGTGTGCCCCCCTCCCCCCTTCCTTTCCTCTTTCCCTC
CCTCCTTCCCCCCCATAGATCCTCCCATTTCTTCCCCTTCTTGACCGTGT
GACGATGCCTCTTAAAATGACGTCCACCTGTCCACGCCAATTACAATTGT
ATGCCCGATTTTTCCAACCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTC
TCCACCCCAGGACCTGGCCATGTCCCAGATCGAGAACCATCCCGAGGGTT
TCAATGCCCTAAGGCGGATGTATCACGAGATCCAAGAGCCCATGATGGAC
GCCATAGGGAACAGGTAGGGAGGAGGAAGGGAAGGAAGGGGAGGAGTAGA
AAGACTTTGCGAGTTCCAGGGCTCACGCAGATACACATACACACACACCT
CCTCTCCCAGCGGTGCAACCGACGCCAGCAGCAGCAGCAGCAGCAGCAGT
GGCACGACAAACAGCACTATCTCCGGCTCTCGTCCCAACACGAACGCCCT
TCCCAACCCCTGGGCCTCGGCCGCCTCCGCCTCCTCCTCCGCCCCTCCCT
CCCTCCCGCCTCCCTCGGGAGGCGCAGCGCCCGTGCCGTTTCTTCCCATG
TTTCCTCCGCAGCAGCAGCCGGGACAGCAGCAGCAGCAGCAGCCGGGTGG
GCAGGCGCCCTTAGCGAACCCATTCGCGGCGATGATGGGCGGAGGGATGG
GCGGAGGGATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGACCGGGG
GCGATGCCGGGTATGCCAGGTAACTAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGGGGAGGGAGGGAAAGAGGGAGGAAAACAGTACCGGGATAGAA
TGAATCACCATCAGCTTATCTTTCCTCCTCCCTTCCCTCCTTCCCTCCCT
CTCTCTCTTCCTCAGGCGCCCCCCCCCCGACATGGAGCAAGTCCTACAGA
CGATGA
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Coding sequence (CDS) from alignment at chr14:864206..867611+

>NO14G02920.2 ID=NO14G02920.2|Name=NO14G02920.2|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr14:864206..867611+ (Nannochloropsis oceanica)
ATGATGGGAGGAATGATGGGGGGTATGCCAGGACAGCCGCAGCCGCAGCA
GCCGCCGCAGCAGCCGCCGTTTCAAGCGGGTCCGAACCCCCTGTTCGGAG
GCTTCCCGGGGATGGGGGGGGTGGGGGGGATGGGTGCTGGCTTTCCGACG
CCTCAGCAACAGCAGCAGATGCAGCAGCAGTTGATGCAGAACCCTGAGAT
GATGGACCAGATGATGCAGTCGCCGTTGATGCAACAAATGATGAGCTCGC
CTGAACTCATGCGCAGCCTTATGATGGCCAATCCTCAGATGCGCGCCCTC
CTCGACGCCAACCCTCAACTGAACCACATCCTCAGCGACCCGGCGATGCT
TCGTCAGGCCATGGAAACTGCCCGCAATCCCGCCGCACGCGAACAAATGA
TGCGGAGCAACGACCTGGCCATGTCCCAGATCGAGAACCATCCCGAGGGT
TTCAATGCCCTAAGGCGGATGTATCACGAGATCCAAGAGCCCATGATGGA
CGCCATAGGGAACAGCGGTGCAACCGACGCCAGCAGCAGCAGCAGCAGCA
GCAGTGGCACGACAAACAGCACTATCTCCGGCTCTCGTCCCAACACGAAC
GCCCTTCCCAACCCCTGGGCCTCGGCCGCCTCCGCCTCCTCCTCCGCCCC
TCCCTCCCTCCCGCCTCCCTCGGGAGGCGCAGCGCCCGTGCCGTTTCTTC
CCATGTTTCCTCCGCAGCAGCAGCCGGGACAGCAGCAGCAGCAGCAGCCG
GGTGGGCAGGCGCCCTTAGCGAACCCATTCGCGGCGATGATGGGCGGAGG
GATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGGATGGGCGGAGGAC
CGGGGGCGATGCCGGGTATGCCAGGCGCCCCCCCCCCGACATGGAGCAAG
TCCTACAGACGATGA
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Synonyms
Publications