NO14G02670.1, NO14G02670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02670.1
Unique NameNO14G02670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1727
Alignment locationchr14:788945..790671 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:788945..790671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02670.1 vs.
Match: EWM24549.1 (lysosomal acid phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 473.4 bits (1217), Expect = 8.000e-130
Identity = 246/435 (56.55%), Postives = 301/435 (69.20%), Query Frame = 0 
Query:   23 ELLLSYVVLRHGARHVLAKTSTLGETGIFGGPTLLPQGKKQCYQAGQAFRARYLDPITCNTTNTCLNRAGAAGSRYGIVDERNDDTNFNNYNSLVNSSALHRTILSASSFLLGAFSEGDTFTRRVNEPYLIQQTPPVFSTEDGQDWRIRPYTKCPSYRRDLQNWFLSAEFLEKEAESASLRMQIQSLLGPSLNASLANWWNIYDNFNIWHTYHVGDAMPP-LDDSLYARVISLAVWLETTKMKSSLVQNRLGGGLLADVLGRMEQAVQHRETGYPTHIYKLLTIAGHFSTQLGVLAALQADKVTNSTLPWLGEKIPSPASVLVFELHHRPASGKGQGEAAREEGYYVRIVIQDGAGQGYQEVPLLCSRGSEGRGVGGKGGKDEGTTFECPLEDFFKLAAPQALSMREWCAVCENDDMLACKVAKEEKGGRRKMTR 457
            EL+LSYVVLRHGAR++L KTSTL E+ +FGGP LLP+G++QCY+ G+ FR RYLD  TC  T TCL   G   S+YG+VD  N D N+NN+N+L NSSALHRT+LSASSFL GAF E         E +++ Q PPVFSTE+GQDWRIR YTKCP+Y RDL+ WF S EF  KEAES SLR ++Q+L GP++N SLA WWN+YD F +       D +P  LDD  Y  +++LA+WLET KM+SSLVQNR+GGGLLADVLGRMEQAVQHRET +P H+Y+L  +A H++T LGVLA+LQAD+V NSTL W+ EKIP+ A+VLVFELH  PA G         E Y VR++ QDG G+ YQ + L CSR             D      CPL +FF+L APQALS  EWCA C N D+ AC+      G  R   R
Sbjct:   33 ELVLSYVVLRHGARNMLPKTSTLQESNVFGGPNLLPEGQQQCYEVGKEFRERYLDLATCARTGTCLTPHGTE-SKYGVVDS-NPDLNYNNFNTLFNSSALHRTLLSASSFLSGAFGEEAC---NGEELHVLSQ-PPVFSTEEGQDWRIRAYTKCPTYDRDLERWFQSPEFRAKEAESLSLRTRVQALAGPAVNVSLAEWWNVYDRFQVRQASVDRDEVPQVLDDETYEGMVALAMWLETAKMRSSLVQNRVGGGLLADVLGRMEQAVQHRETSFPPHVYRLTGVAAHYNTLLGVLASLQADQVANSTLSWVREKIPALAAVLVFELHAVPAQG--------GEEYLVRLMYQDGPGEPYQGISLPCSR-------------DGDADHACPLREFFQLGAPQALSASEWCAACGNRDVWACQAGGRGTGKLRSRGR 440
The following BLAST results are available for this feature:
BLAST of NO14G02670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24549.18.000e-13056.55lysosomal acid phosphatase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02670NO14G02670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02670.1NO14G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02670.1.cds1NO14G02670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02670.1 ID=NO14G02670.1|Name=NO14G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
ACAGAACAACACAGATCCAGGCCGATCTATACTTCAACATTGGGTAAATC
TAAGCTTAAACTGCCGACTACCCTGTTATTTTTCATCATACTTGGACGAG
TCTGGCCCCACTTTACAAAAAGCCCGCCGCGCCTCGCCTGTTGCCACCAC
GCCATTGGTGGAAACATGCAGCACTGCGTCCTGCTCATCCTGCTTCTCCT
TGTTATCATTACCCTCCACTTCACTACCGCCGAACTTCTGCTTTCTTACG
TGGTTCTTCGTCATGGTGCCCGACATGTCCTTGCTAAGACAAGCACTCTT
GGGGAGACAGGCATCTTTGGGGGGCCCACCCTCTTGCCGCAGGGCAAAAA
ACAATGCTATCAAGCCGGACAAGCCTTTCGTGCGCGATACCTTGATCCAA
TCACCTGCAACACTACCAATACATGTTTGAATCGGGCAGGTGCCGCGGGA
TCGAGGTACGGCATTGTCGATGAGAGAAACGATGACACGAATTTCAACAA
CTACAACTCTCTGGTCAACTCCTCCGCCTTGCACCGCACGATCCTAAGCG
CCAGTAGCTTCTTGCTTGGTGCCTTCTCCGAAGGTGACACATTTACAAGG
AGAGTAAATGAGCCATATCTGATACAGCAAACCCCTCCCGTGTTCTCAAC
CGAGGACGGACAAGACTGGCGTATTCGCCCGTACACTAAATGCCCCTCTT
ATAGGCGTGATTTGCAAAATTGGTTCTTGAGCGCTGAATTTTTAGAGAAA
GAAGCCGAGTCCGCATCTTTGCGCATGCAGATTCAGTCTCTTCTTGGGCC
GAGCCTGAATGCCTCCCTTGCGAATTGGTGGAACATATATGATAATTTTA
ATATCTGGCACACGTACCACGTGGGTGACGCCATGCCCCCGCTCGACGAT
AGTCTATACGCACGCGTCATCTCCCTTGCCGTGTGGCTCGAGACCACCAA
AATGAAATCCTCCCTTGTCCAGAACCGCCTCGGTGGGGGCCTTCTCGCGG
ATGTCCTGGGACGAATGGAACAAGCCGTCCAGCACCGCGAGACCGGCTAC
CCAACCCATATCTACAAGCTCCTGACTATTGCCGGGCACTTTAGTACACA
GCTCGGCGTCCTTGCCGCGTTACAAGCCGATAAGGTCACAAATAGCACCT
TACCCTGGCTGGGGGAGAAAATTCCCTCCCCTGCTTCAGTCCTTGTTTTT
GAGTTGCATCACCGACCTGCCTCTGGGAAGGGGCAAGGGGAAGCAGCGAG
GGAGGAGGGATACTACGTCCGGATAGTTATTCAGGATGGTGCCGGACAAG
GGTACCAAGAGGTGCCTTTGCTGTGCAGTCGTGGATCGGAGGGCAGGGGA
GTGGGAGGCAAGGGGGGAAAGGACGAGGGGACAACTTTTGAATGTCCGCT
GGAAGATTTCTTCAAGCTGGCGGCGCCACAGGCCTTGAGTATGAGGGAAT
GGTGTGCGGTGTGCGAAAATGATGATATGCTGGCTTGCAAGGTGGCGAAA
GAAGAGAAGGGAGGGAGGCGGAAGATGACGCGGTAGATGAGGAGGAGGAG
TAGGAGGAGGAGGAGAAGAAGAAAGATAAGGAGGAGGTTCTCATCTTCCC
TTCTTCCCCTATGTAGTTTCCTATTGTCTCAATAAGGAGCAATAGATGAG
ACAAACCAACATACTGGTGTATATTTAAACACTTACAAAGAAGTAGGGAT
ATAGAAGTGGCGACGAGCCCATACCAC
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protein sequence of NO14G02670.1

>NO14G02670.1-protein ID=NO14G02670.1-protein|Name=NO14G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MQHCVLLILLLLVIITLHFTTAELLLSYVVLRHGARHVLAKTSTLGETGI
FGGPTLLPQGKKQCYQAGQAFRARYLDPITCNTTNTCLNRAGAAGSRYGI
VDERNDDTNFNNYNSLVNSSALHRTILSASSFLLGAFSEGDTFTRRVNEP
YLIQQTPPVFSTEDGQDWRIRPYTKCPSYRRDLQNWFLSAEFLEKEAESA
SLRMQIQSLLGPSLNASLANWWNIYDNFNIWHTYHVGDAMPPLDDSLYAR
VISLAVWLETTKMKSSLVQNRLGGGLLADVLGRMEQAVQHRETGYPTHIY
KLLTIAGHFSTQLGVLAALQADKVTNSTLPWLGEKIPSPASVLVFELHHR
PASGKGQGEAAREEGYYVRIVIQDGAGQGYQEVPLLCSRGSEGRGVGGKG
GKDEGTTFECPLEDFFKLAAPQALSMREWCAVCENDDMLACKVAKEEKGG
RRKMTR*
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mRNA from alignment at chr14:788945..790671+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02670.1 ID=NO14G02670.1|Name=NO14G02670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp|location=Sequence derived from alignment at chr14:788945..790671+ (Nannochloropsis oceanica)
ACAGAACAACACAGATCCAGGCCGATCTATACTTCAACATTGGGTAAATC
TAAGCTTAAACTGCCGACTACCCTGTTATTTTTCATCATACTTGGACGAG
TCTGGCCCCACTTTACAAAAAGCCCGCCGCGCCTCGCCTGTTGCCACCAC
GCCATTGGTGGAAACATGCAGCACTGCGTCCTGCTCATCCTGCTTCTCCT
TGTTATCATTACCCTCCACTTCACTACCGCCGAACTTCTGCTTTCTTACG
TGGTTCTTCGTCATGGTGCCCGACATGTCCTTGCTAAGACAAGCACTCTT
GGGGAGACAGGCATCTTTGGGGGGCCCACCCTCTTGCCGCAGGGCAAAAA
ACAATGCTATCAAGCCGGACAAGCCTTTCGTGCGCGATACCTTGATCCAA
TCACCTGCAACACTACCAATACATGTTTGAATCGGGCAGGTGCCGCGGGA
TCGAGGTACGGCATTGTCGATGAGAGAAACGATGACACGAATTTCAACAA
CTACAACTCTCTGGTCAACTCCTCCGCCTTGCACCGCACGATCCTAAGCG
CCAGTAGCTTCTTGCTTGGTGCCTTCTCCGAAGGTGACACATTTACAAGG
AGAGTAAATGAGCCATATCTGATACAGCAAACCCCTCCCGTGTTCTCAAC
CGAGGACGGACAAGACTGGCGTATTCGCCCGTACACTAAATGCCCCTCTT
ATAGGCGTGATTTGCAAAATTGGTTCTTGAGCGCTGAATTTTTAGAGAAA
GAAGCCGAGTCCGCATCTTTGCGCATGCAGATTCAGTCTCTTCTTGGGCC
GAGCCTGAATGCCTCCCTTGCGAATTGGTGGAACATATATGATAATTTTA
ATATCTGGCACACGTACCACGTGGGTGACGCCATGCCCCCGCTCGACGAT
AGTCTATACGCACGCGTCATCTCCCTTGCCGTGTGGCTCGAGACCACCAA
AATGAAATCCTCCCTTGTCCAGAACCGCCTCGGTGGGGGCCTTCTCGCGG
ATGTCCTGGGACGAATGGAACAAGCCGTCCAGCACCGCGAGACCGGCTAC
CCAACCCATATCTACAAGCTCCTGACTATTGCCGGGCACTTTAGTACACA
GCTCGGCGTCCTTGCCGCGTTACAAGCCGATAAGGTCACAAATAGCACCT
TACCCTGGCTGGGGGAGAAAATTCCCTCCCCTGCTTCAGTCCTTGTTTTT
GAGTTGCATCACCGACCTGCCTCTGGGAAGGGGCAAGGGGAAGCAGCGAG
GGAGGAGGGATACTACGTCCGGATAGTTATTCAGGATGGTGCCGGACAAG
GGTACCAAGAGGTGCCTTTGCTGTGCAGTCGTGGATCGGAGGGCAGGGGA
GTGGGAGGCAAGGGGGGAAAGGACGAGGGGACAACTTTTGAATGTCCGCT
GGAAGATTTCTTCAAGCTGGCGGCGCCACAGGCCTTGAGTATGAGGGAAT
GGTGTGCGGTGTGCGAAAATGATGATATGCTGGCTTGCAAGGTGGCGAAA
GAAGAGAAGGGAGGGAGGCGGAAGATGACGCGGTAGATGAGGAGGAGGAG
TAGGAGGAGGAGGAGAAGAAGAAAGATAAGGAGGAGGTTCTCATCTTCCC
TTCTTCCCCTATGTAGTTTCCTATTGTCTCAATAAGGAGCAATAGATGAG
ACAAACCAACATACTGGTGTATATTTAAACACTTACAAAGAAGTAGGGAT
ATAGAAGTGGCGACGAGCCCATACCAC
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Coding sequence (CDS) from alignment at chr14:788945..790671+

>NO14G02670.1 ID=NO14G02670.1|Name=NO14G02670.1|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr14:788945..790671+ (Nannochloropsis oceanica)
ATGCAGCACTGCGTCCTGCTCATCCTGCTTCTCCTTGTTATCATTACCCT
CCACTTCACTACCGCCGAACTTCTGCTTTCTTACGTGGTTCTTCGTCATG
GTGCCCGACATGTCCTTGCTAAGACAAGCACTCTTGGGGAGACAGGCATC
TTTGGGGGGCCCACCCTCTTGCCGCAGGGCAAAAAACAATGCTATCAAGC
CGGACAAGCCTTTCGTGCGCGATACCTTGATCCAATCACCTGCAACACTA
CCAATACATGTTTGAATCGGGCAGGTGCCGCGGGATCGAGGTACGGCATT
GTCGATGAGAGAAACGATGACACGAATTTCAACAACTACAACTCTCTGGT
CAACTCCTCCGCCTTGCACCGCACGATCCTAAGCGCCAGTAGCTTCTTGC
TTGGTGCCTTCTCCGAAGGTGACACATTTACAAGGAGAGTAAATGAGCCA
TATCTGATACAGCAAACCCCTCCCGTGTTCTCAACCGAGGACGGACAAGA
CTGGCGTATTCGCCCGTACACTAAATGCCCCTCTTATAGGCGTGATTTGC
AAAATTGGTTCTTGAGCGCTGAATTTTTAGAGAAAGAAGCCGAGTCCGCA
TCTTTGCGCATGCAGATTCAGTCTCTTCTTGGGCCGAGCCTGAATGCCTC
CCTTGCGAATTGGTGGAACATATATGATAATTTTAATATCTGGCACACGT
ACCACGTGGGTGACGCCATGCCCCCGCTCGACGATAGTCTATACGCACGC
GTCATCTCCCTTGCCGTGTGGCTCGAGACCACCAAAATGAAATCCTCCCT
TGTCCAGAACCGCCTCGGTGGGGGCCTTCTCGCGGATGTCCTGGGACGAA
TGGAACAAGCCGTCCAGCACCGCGAGACCGGCTACCCAACCCATATCTAC
AAGCTCCTGACTATTGCCGGGCACTTTAGTACACAGCTCGGCGTCCTTGC
CGCGTTACAAGCCGATAAGGTCACAAATAGCACCTTACCCTGGCTGGGGG
AGAAAATTCCCTCCCCTGCTTCAGTCCTTGTTTTTGAGTTGCATCACCGA
CCTGCCTCTGGGAAGGGGCAAGGGGAAGCAGCGAGGGAGGAGGGATACTA
CGTCCGGATAGTTATTCAGGATGGTGCCGGACAAGGGTACCAAGAGGTGC
CTTTGCTGTGCAGTCGTGGATCGGAGGGCAGGGGAGTGGGAGGCAAGGGG
GGAAAGGACGAGGGGACAACTTTTGAATGTCCGCTGGAAGATTTCTTCAA
GCTGGCGGCGCCACAGGCCTTGAGTATGAGGGAATGGTGTGCGGTGTGCG
AAAATGATGATATGCTGGCTTGCAAGGTGGCGAAAGAAGAGAAGGGAGGG
AGGCGGAAGATGACGCGGTAG
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Synonyms
Publications