NO14G00490.1, NO14G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00490.1
Unique NameNO14G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length294
Alignment locationchr14:191364..191657 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:191364..191657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00490.1 vs.
Match: EWM19967.1 (hypothetical protein Naga_102579g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 108.6 bits (270), Expect = 1.100e-20
Identity = 54/95 (56.84%), Postives = 66/95 (69.47%), Query Frame = 0 
Query:    1 MYKVHTPNQTYHKSADFFLVTHRDPYDMVCPQAKMFAVIFFKDLNQALRSDHTMAQDEKRIFNLAEAAGPENALHMHSSALHSIEGMTEVVEAMA 96
            +YK H  +Q YH SADFFLVTHRDPYDMVC    MF  +FF D  +A+ S   MA +EKRI  +A  +G  +ALH+H SAL+S E M +VVEAMA
Sbjct:   14 VYKSHWADQEYHNSADFFLVTHRDPYDMVCSMGNMFRPVFFTDFKRAISSCRGMADNEKRILRVASKSG--SALHVHHSALYSAESMAQVVEAMA 106
The following BLAST results are available for this feature:
BLAST of NO14G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM19967.11.100e-2056.84hypothetical protein Naga_102579g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00490NO14G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00490.1NO14G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00490.1.cds1NO14G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00490.1 ID=NO14G00490.1|Name=NO14G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=294bp
ATGTATAAAGTTCACACGCCGAATCAGACTTATCACAAGAGCGCCGATTT
CTTCTTGGTGACCCACCGCGACCCGTATGACATGGTTTGCCCACAAGCCA
AAATGTTTGCTGTGATATTCTTCAAGGATCTCAATCAGGCCTTGCGTTCA
GACCATACCATGGCGCAGGATGAAAAGAGAATCTTCAACCTTGCCGAAGC
TGCGGGGCCTGAGAATGCATTACACATGCATTCTTCTGCGCTCCATTCCA
TCGAGGGTATGACGGAAGTGGTGGAGGCGATGGCAAGGATGTAG
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protein sequence of NO14G00490.1

>NO14G00490.1-protein ID=NO14G00490.1-protein|Name=NO14G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MYKVHTPNQTYHKSADFFLVTHRDPYDMVCPQAKMFAVIFFKDLNQALRS
DHTMAQDEKRIFNLAEAAGPENALHMHSSALHSIEGMTEVVEAMARM*
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mRNA from alignment at chr14:191364..191657+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00490.1 ID=NO14G00490.1|Name=NO14G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=294bp|location=Sequence derived from alignment at chr14:191364..191657+ (Nannochloropsis oceanica)
ATGTATAAAGTTCACACGCCGAATCAGACTTATCACAAGAGCGCCGATTT
CTTCTTGGTGACCCACCGCGACCCGTATGACATGGTTTGCCCACAAGCCA
AAATGTTTGCTGTGATATTCTTCAAGGATCTCAATCAGGCCTTGCGTTCA
GACCATACCATGGCGCAGGATGAAAAGAGAATCTTCAACCTTGCCGAAGC
TGCGGGGCCTGAGAATGCATTACACATGCATTCTTCTGCGCTCCATTCCA
TCGAGGGTATGACGGAAGTGGTGGAGGCGATGGCAAGGATGTAG
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Coding sequence (CDS) from alignment at chr14:191364..191657+

>NO14G00490.1 ID=NO14G00490.1|Name=NO14G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at chr14:191364..191657+ (Nannochloropsis oceanica)
ATGTATAAAGTTCACACGCCGAATCAGACTTATCACAAGAGCGCCGATTT
CTTCTTGGTGACCCACCGCGACCCGTATGACATGGTTTGCCCACAAGCCA
AAATGTTTGCTGTGATATTCTTCAAGGATCTCAATCAGGCCTTGCGTTCA
GACCATACCATGGCGCAGGATGAAAAGAGAATCTTCAACCTTGCCGAAGC
TGCGGGGCCTGAGAATGCATTACACATGCATTCTTCTGCGCTCCATTCCA
TCGAGGGTATGACGGAAGTGGTGGAGGCGATGGCAAGGATGTAG
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Synonyms
Publications