Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr13 genome chr13:1016118..1026479 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03420.1 vs.
Match: EWM20768.1 (hypoxia up-regulated 1 [Nannochloropsis gaditana])
HSP 1 Score: 727.2 bits (1876), Expect = 6.600e-206
Identity = 405/580 (69.83%), Postives = 461/580 (79.48%), Query Frame = 0
Query: 338 VHDDIDLSTQLSRMELEALSQDLFERALVPLESVLEQAGLTLDDVAAVEVIGGGVRVPKVQQVLRERLGQLELSMHLNGDEAMAQGAAFYAANISTRFKVRPIGVTDMLPFGVGARIEEAVPEEGKEGGGGFLGVLGLKKKSTKDETDEEEGAEKWQRRATIFSPGHKLKSNRTISFNTTKDVALNLTYESSPLFPPGAQATIGLFDIRGVSELAKEHGSKSIYPPKVFLTFELDASGMVHLVKAEARLVEDTPATEGAAATA--AEAAAIAAEINAETEKTE-----------ASSEDGEGEED--EGKGGKESVKEDEGAAAASTAEGDKNVTDSNSTSTDTTAAAPKAAPAPVVPKPTVHRKTLTVTMHYEGLRLRPASEAEKSESKKKLAELRANDERKREKADARNSLEAYLYEVKDKMMEHEEELFTVSTEEQRTAVLSLVEETDDWMYDEGRDVEASLYREKTSRVRSLTVPIFLRQVEGPGGARAAAVEAAAKNVAEIRALVKKWNTTMPWLTDEEKDGLLGEAAAVETWLQEKEEAQALKEGHETPAFFSTEVPPQLKKMKDTARRLGRKP 903
VHDDIDLST LSR +LE L DLFERA+ PL+SVL+QA LTL D+AAVEVIGGGVRVPKVQQV+++RLG LELSMHLNGDEAMAQGAAFYAANIST FKVRPIGVTD+LPFGVGAR+EEAVPEE K GGGGFLG LGLKKK E ++E+ EKWQRRATIF+PGHKL+SNRTISFNT+KD+ALNLTYE+S LFPPGAQ TI LFDIRGVSEL +EHG+K+ YPPKVFLTFELDAS +VHLVKAEARL ED P + A + +I + +T A + D EE+ EG+GGKE+ E++ A +N T N+TS++TTA AP PKP VHRK L VT HYEGLRLRP +E EK SK+KLA LRAND+ KREKADARNSLEAYLYEVK+KMMEHEEEL VST+EQR+AVL+ VE TDDWMYDEGRDVEAS+Y+E+T++VR+L VPIFLRQ EGPGGARAAA+EAA KNVAE+RALVK+WN TMPWLT+EEK+ LL EA VETWLQEKE AQA KEGHE PAF S +VPPQLKKMKD ARRLGRKP
Sbjct: 10 VHDDIDLSTHLSRAQLEELCADLFERAVQPLDSVLQQANLTLKDIAAVEVIGGGVRVPKVQQVVKDRLGSLELSMHLNGDEAMAQGAAFYAANISTSFKVRPIGVTDILPFGVGARLEEAVPEEEK-GGGGFLGALGLKKKK---EEEKEQATEKWQRRATIFAPGHKLRSNRTISFNTSKDIALNLTYEASALFPPGAQPTIALFDIRGVSELVREHGTKTSYPPKVFLTFELDASALVHLVKAEARLQEDAPPSSEAVGVSPLTGVPSIPPHCRPHSPRTHPRSPFLLPFALAQNADAPSEEEDGEGEGGKEAEAEEKKDAETVKKVDGQNATAGNTTSSNTTAPAP--------PKPIVHRKILRVTSHYEGLRLRPGTEEEKESSKQKLAALRANDQLKREKADARNSLEAYLYEVKNKMMEHEEELSLVSTDEQRSAVLAQVEATDDWMYDEGRDVEASVYKERTTQVRALAVPIFLRQAEGPGGARAAALEAAVKNVAEVRALVKRWNVTMPWLTEEEKESLLSEATVVETWLQEKEAAQAAKEGHEEPAFLSIDVPPQLKKMKDIARRLGRKP 577
The following BLAST results are available for this feature:
BLAST of NO13G03420.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 6000 Expect = 6.60e-206 / Id = 69.83 Sequence EWM20768.1
Match Name E-value Identity Description
EWM20768.1 6.600e-206 69.83 hypoxia up-regulated 1 [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO13G03420.1 ID=NO13G03420.1|Name=NO13G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=6164bp back to top protein sequence of NO13G03420.1
>NO13G03420.1-protein ID=NO13G03420.1-protein|Name=NO13G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=981bp back to top mRNA from alignment at chr13:1016118..1026479-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03420.1 ID=NO13G03420.1|Name=NO13G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=10362bp|location=Sequence derived from alignment at chr13:1016118..1026479- (Nannochloropsis oceanica)ATGTCTGCG
ACAACAAGGGCACACGGAAGGAGAAGAGCCAACCTGTGGTTTGTCTGCTT
CTCCTTCATCATGGCGTCCCTCCTGGCCCCAGTGGCCCAGGCGGGTGTGA
TGGGCGTCGACCTTGGCAGCGAATTCATGAAGGTGTCTTTG GTACGTCCA
CCTGTGTCACGAACAGATCAAAGGGGAGGGGGAGAGAGCGCGCGCACGCA
GCAGCAAGGCATGGTCGCATGGCGTGCGGAGGTCTGCTGCAAGAAGTGTG
CATTCATTCCCTTCCTTCCTTTCTCGCTCTTTCCCTTTCTTCCTTCTAGG
TCAAGCCAGGCACAATGATGGACATTGTGACCAACATCCACAGCAAACGC
AAGACCGAGACCATGATCTCCTTCTACCAAG GTATGCTGCATCCCATCCC
TCTTTGCTTCCCTCGCTTCCTCGTGCCTTCTTTCTTCCCTCCCAGCTCTC
CAGGCCCCCAAGTCCCTCATCCCTCCCTCTTCCTCCCTTTCACCTCTCTT
TCTCACCTGTCCAGGCGAACGTTCGTACGGGGCGGACGCCTACTCCCTCC
TCACCCGCCGGCCCGAGGTCACCTACGCCCGCATCCCCACCTTGTTGGGC
CGGCACGACGAGCACCCTTCGGTGGCCCTGTTGGAGGAGGCCTATTTCCC
AACCAAG GTCCGTTTGCTGCATACCACTCCCTCCCTCCTTCCCTCCCTGT
TTGCCTCTCATCCTCCTGAGCCGGCGTGAAGAGGGTCCTCGCGTGGTTTT
GTCGGCAGAGGCCCGCGACGAGGCCGTTGTACTTCCCCACATACGCTGGC
ACGGCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTCTTTCTCTGTCTGCC
CCTGTTGCCTTTCCCCCCGTCAAGCCAATCCCCTTTCGCGCCATCATGTC
CCTTTCACCTTCCCTTTACCCTCCTGTCTACAGCTGCACCCGTCTTCTCA
CCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCGTCC
CTTCCCAGGTATCCTACAATGAGAGCTCGGGCGGGCTTGCTATCCTCCAC
CAGGACGAAGCCTCTTACTCCCCCGAGGAGCTGATGGCAATGATCCTGAC
CCACGCCAAG GTAAGTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCCTCGTCTCTCTTTTCCTCCGAGGACGGACCCAGAAGCCA
CGATCCTGTCCCACGCCGAGGGATACTTACTCTTCCCCCCCTTCCCTGGA
CTCCTCCCTCACCTTCCGCCCTTCCCCCCCTCCTCCTCCCAGGACATTAC
CAAGGCCTACGGCGGCGTGCCCGTGCGAGACGCCGTGCTGGTGGTGCCCT
CCTTCTACACCCAGCCCGAGCGACAGGCGCTGCTCGACGCGGCCGAGATC
GCCGACATGAAG GTATGTGGGCACCCAGTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCCTTCCTTTTTCCACGCCCCCAGACGCGCT
TCCCGCCCTTCCTGACCGCCTCTCCCTCCTCTCCCTTCCCCCTCCCTTTT
CCCTTCCTCCTTCCCTCCTCGTCCAGGTCCTGGGCCTGATCGACGAGAAC
ACGGCGGCGGCCCTTCTCTTCTCGGTGGATAACGTCTACGAGCAGCCCAC
CAACATCATCTTCTACAATATGGGCGCCTCCTCCCTCCAGGTCTCTTTG G
TAAGTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
GTGTCTGCACTCCATCCTCAGTTTAGAACCCGGCTGGTAGCGAGCAGAAG
GAGAGGGGCCTCTTCTCACATTGCTTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCGGCAGGTGGAATTCTCGTCCTACACCACGGGCAAGGGCAGCTACG
AGAAGCGCTTCGCGCACTTCGCGGTCCGGGCCAAG GTAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGACGCCTGGTGGTGGCTTGCATCAA
TGGAAATCGTGTGTCCGCCATAACTTGTGCTTCAGGATGACTTACCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCCTTCCTTCCGCC
TTTCCTCTCAGGCCTGGGATAGCACCCTGGGCGGCTTTCAATTGGACCTG
CGCGTGGCCGAGGTCCTGGCCGACCGCTTCAACGAGAAGTGGAGGAAGGG
GAAGGGGAAGGGGAAGG GTAGGTGGCGAGGGAGGGAGGGAGGGAGGGAGA
GAAGGAGGGAGGGGTGGCTGATCTAAGGCATGTCTCGGGTTGGACGAGCG
GGCATTGCGCCTTCTCCTCCACGGACCGTCCTCCCTCCTCTCCCCCGCCC
CTCTCCCTCCTCATCCTCCTCCCCCTCCAGGAATCCGTATCTTGCCGCGA
ACGCCTCCGTAGCATTCTCACCCCTCCTTTCCTCCCCCTCCCCCTCCCCC
CCTTTAGACGTGGACGTGCGGCGGCACCCCAAGGCCATGGCCAAGATCCG
GGCGCAGGCGAAGAAGGTGAAGGAGGTCCTGTCGGCCAACACCAACATCC
CCGTGCATGTAGAAG GTCAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAAGGAGAGAGTGGGCGTGTGTGCTTGTAGACAGAGGGGAGGGTAAT
TTCAGTGCATGCCTTGCTCTCTCCCCCCTCCCCTCCCTCCCTCTCTTCTT
CCCTTCTTCCATCCATTCCATCAACATAACACAAGACACGGGCATTGCAC
TGCGCTTGCTCATTCCTTCCCCCTTCCCTCCTTCACTCCAGGCGTGCACG
ACGACATCGATCTTTCCACGCAGCTGTCCCGGATGGAGCTGGAAG GTTCG
AAATGAGGGAAAGGGAGAGGGAGGGAGTGAAGGAGGGAGGGAGTGAAGGA
GGGAGGAAGTGAAGGGAGTGAAGGGAGTGAAGGAGGGAGGGAAGAAGGGA
GTGAAGGAGGGAGGAAGGGAGGGAGGGCACGAAGGAGGGAGGGCATGAAG
GAGGGAGGGAAGGAGGATAAAGAATCGTCAAACCAACCCGTTTCTTCCCT
CCCTCCCCCTCCCCTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCTCCCAG
CGCTGAGCCAAGATCTGTTTGAGCGGGCCTTAGTCCCCCTGGAGTCGGTG
CTGGAGCAAGCCGGCCTGACTCTGGATGACGTGGCGGCCGTGGAGGTGAT
CGGGGGCGGCGTGCGCGTCCCCAAAGTACAGCAG GTAGGAGGGAAGGAGG
ATAAAGGATCGTCCAACCAACCCGTCGTCTCCCTCCCTCCTCCACTTTCC
CACTCCCTCGAGGTAGCTGTACATGCGTGGCCCTTCCACTCACTTCTCTT
TTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCATGTCCTTGCCTCAGGTCCTGAGGGAGCGCCTGGGCCAGCTGGAGCT
GTCGATGCACCTCAACGGCGACGAGGCCATGGCCCAGGGCGCGGCCTTCT
ACGCCGCCAACATCTCCACGCGCTTCAAG GTCCCTCCCTCCCTCCCTCCC
ACCCCGCTGTTTATGGTGATATTTGACGAAAATGAATATTGATACACCCT
CCCTCCCTCCCTCCCTCCCCCCCTCCCTCAGGTCCGCCCCATCGGTGTGA
CGGATATGCTGCCCTTTGGAGTGGGGGCTCGGATCGAGGAGGCCGTCCCC
GAGGAAGGGAAGGAGGGAGGGGGAGGCTTTCTGGGTGTGTTGGGGCTGAA
GAAGAAGAGTACAAAG GTGAGAGGTGTAGGGAGGGGGGGAGGGAGAGAGA
TGGAGGAAATGCGATAATTCGTGGTGCCTGGGAGGCACTCACTTATCCCC
TCCCTCCTACCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTC
CCCCTACCTCAGGACGAGACGGACGAGGAGGAGGGCGCGGAGAAGTGGCA
GCGGCGGGCTACGATCTTCTCACCCGGGCATAAGCTCAAGAGCAACCGCA
CTATCTCCTTCAACACCACGAAGGACGTCGCCCTCAACCTC GTGCGTCCT
CCCTCCCTCCCTCCCTCCTCCCTCCTTCTCTCCCTGCCTCCCTGCCTCCC
TCCCTCCCTCCCTCCCTCTCTCCTTTGACCCACACACCTTCTCGGAGGCA
ACTCTCATCCTCCCTCACAATGCATCCCCCCCCTCCCTCGCTCCCCTCCT
TCCGCCCCCCCTCCCGCAAGACCTACGAGAGCTCCCCTCTTTTTCCCCCC
GGGGCGCAGGCCACCATCGGCCTCTTCGATATTCGCGGCGTCTCGGAGCT
GGCTAAGGAGCACGGTTCCAAGAGCATCTACCCTCCCAAG GTACGCGCCC
TCCCTCCCTCTCTCTTTCCCTCCCTCCCTCCTCCTGGGCCCTCCTGGCAT
TGGAGACGGAGGCCAAGCCCATGAGTTCCTCCCTCGCCTCGTTCTCGCCT
TATCCCGCCCCCTCCCCGCTCCCTCCCTCACCCCCTCCAGGTCTTCCTGA
CCTTCGAGTTGGACGCCTCGGGCATGGTCCACCTTGTCAAGGCCGAGGCC
CGCTTGGTGGAGGACACTCCGGCCACTGAAGGAGCAGCAGCAACAGCAGC
AGAAGCAGCAGCAATAGCAGCCGAGATAAACGCCGAAACG GTATGTCCTG
TCCTTCCCCCCCTCCTTCCCCCCTCCCCCCCCACCCCCTCTCCCCCGCTT
CTTCTCGTCCCTCTTGAAATCTCTCCCATTCGATTCTCACTGCATCCCCC
CGTCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTCCC
TCCCTCCCTCTCTCCCTCCCTCCCTCTTTCCAGGAGAAGACCGAGGCCTC
GTCCGAAGACGGCGAAGGGGAAGAAGATGAGGGAAAAGGGGGGAAAGAGA
GCGTGAAGGAGGACGAGGGGGCTGCTGCTGCCTCCACGGCTGAGGGAGAC
AAGAACGTGACGGACAGCAACAGCACCAGCACCGACACAACTGCTGCTGC
TCCCAAGGCGGCTCCAGCGCCTGTCGTACCCAAGCCCACGG GTAAGGAGG
GAAAGAGGGAGGGAGGGAGGGAGGGGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAC
AGTTTGGCGACTGGAGAGACGCACTCATCCTCCTCTCCCTCCCTCCCTCC
CCTTCCCCCTGCCTCCCTCCCTCTCCCAAGTGCACCGCAAGACCCTGACG
GTGACCATGCACTACGAGGGCCTGCGCCTGCGCCCGGCCTCGGAGGCGGA
GAAGAGCGAGAGTAAGAAGAAACTGGCGGAGCTGCGCGCGAACGACGAGA
GGAAGCGGGAGAAGGCTGATGCTAGGAATAGTTTGGAGGCCTACCTGTAC
GAGGTGAAGGACAAGATGATGGAGCACGAGGAG GTGAGACAGTGAGGGAG
AGGGAGGGGAGAAAAAAACGACAAAGCCGCTCGCTTTTTGGGATCCCATG
ACGCTCACCCCCCTGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTGCAGGAGCTTTTCACCGTGTCCACGGAGGAACAGCGCACT
GCCGTCCTGTCTTTGGTGGAGGAGACTGACGACTGGATGTATGACGAAG G
TCCGTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTCCCTCTTG
CTCTCTTCCTCCGTCCTCACTGGTTATCAGGTCATCCGTGCACCTGGACG
AGGCAGTCCTGATCCATCGGCCCCCCTTCCCTCCCTCTCTCCCTCTCCCC
CTCAGGCCGTGACGTGGAGGCCTCGCTCTACCGTGAGAAGACCTCTCGCG
TCCGATCTCTGACAGTGCCGATCTTCCTGCGCCAGGTCGAGGGCCCCGGA
GGCGCCCGGGCGGCGGCTGTGGAGGCAGCGGCCAAGAACGTGGCAGAG GT
AGGTGGGGGGGAAGGGGGGAATGCACTCGTTTCTCCCCTCCCCTCTCTCC
CTACTTCCTGTTCTCCCTCTCGATGCTCCTTTAATCCCCTCCCTTGACGG
CTTCTCTCTGGAGCGGTGGGTGCGCGTCGCTCCTCTTCTCCCTTCCCCTC
CCTCCCCAACGGCCTGCCCTTCCACTCTGTCCATGTCTGCCTTGTGATTC
ATTCGCGCAACCGCCTCCCTCCTTCCTACCCCTCCTCCTTCCCTCCCTCG
CCAGATTCGCGCCCTGGTGAAAAAGTGGAACACGACCATGCCCTGGCTCA
CTGACGAAGAGAAG GTACTTCCCTCCCTCCCTTCCTCCCTCCTCCCACCC
TTTCCCGGACAAACCACTCAATCCTCCTTCCCTTCTTCCCCTCCCCCTCC
TAGGATGGTCTCCTGGGCGAGGCGGCGGCTGTGGAGACGTGGCTTCAAGA
GAAGGAGGAGGCCCAAGCCCTCAAGGAGGGCCACGAGACGCCTGCCTTCT
TT GTACGTCCCTTCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCAACA
CTCCAAGAGAAGGATACAGCCTCATCTTTTTCTTTCACCCCTCCCGTTTC
ATTGTCGCTCACTCCCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCT
TCCCTCTAGTCCACGGAGGTGCCCCCCCAACTCAAGAAGATGAAGGACAC
GGCCCGACGCCTGGGCCGCAAGCCG GTAAGGAGGGGTGGAGGGAGGGAGG
GAGGGGAAGAGGGAGGCAGGCGGGAGGGAGGGGACGGGTGGATGATGCGT
TAGGAGGAGGAAGCGGAAAGAAAGAGGGGAGGAGAAGGGTAGGGATGGAA
GCGAAGGAAAGCAACCTCCGGAAGGATACATTAAATGTTAGTTCCTCAAC
GTGCCCGCCCCCTCCCTCCCCCCCTTCCCCCCTCCCGTCCTCTAGGCGCC
CCCCCCTCCCCCCCCTCCCAAGCCCGAGAGCAACAAGACGGATGAGAACG
CGACCGCCAGCAACGTCACGATGGAGGGGTCGGGGGAGGGTGGGAAGGAG
GAAGGGATCGAGACGGTGAGCATCAAACTGGGGGAGGAAGCAGGGGAGGA
AGCGACGGAGGAAGCAGGGGAGGAAGCGACGGAGGAAGGAGACAAGGCAG
AAGGGAAGACAATGGGAGAAGATGAGCTTTAA back to top Coding sequence (CDS) from alignment at chr13:1016118..1026479-
>NO13G03420.1 ID=NO13G03420.1|Name=NO13G03420.1|organism=Nannochloropsis oceanica|type=CDS|length=2943bp|location=Sequence derived from alignment at chr13:1016118..1026479- (Nannochloropsis oceanica) back to top