NO13G03130.1, NO13G03130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G03130.1
Unique Name	NO13G03130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1247
Alignment location	chr13:900619..901865 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:900619..901865 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO13G03130.1 vs.

BLAST of NO13G03130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G03130	NO13G03130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G03130.1	NO13G03130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G03130.1.cds1	NO13G03130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:900619..901865-
coding sequence from alignment at chr13:900619..901865-

mRNA sequence

>NO13G03130.1 ID=NO13G03130.1|Name=NO13G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp
AAACGAACGTACTGGCCGAACAAAGAGCAACAGCATGTTGTTTACCTGGC
CATTTCTTGGGAACTGCACCACATAAGGGTGTGGGACAATGTGGCAGACG
CTGCATTTGTGAGTGGCTGGCCTAATTACTGCTCTCGACGACCTCCTCTT
CCCTCAGCCACACGCTTACCGCATCACAGCCTCCTGCCTCTCCGCTCGCC
TCTCGGATACTTATGCTGTCTTGTATGTGGGCCATGAAAGCACTTTACCA
ATGCCGCAGCCTTGCCTGATCATTTGCCCATTCTATTTTGCACAGCATCA
CGGTACTGATCATGGCACCATTCATCTGCTGGTACACTGCTTTGCATAGC
CAACTCCTGCGAGCCAACCACCATTACTTGTGAAGCGCTGCGCCCTGCCC
TTCGGGCGTGCGTGGTGTCGGGTGGATGGCCCTGCGATTGAAGCACCCTT
GCGCCAATGCACTATACACTACACACATTCACCCATCCCCCACCCTCACG
CTCATCACACACACAGTGCACGTTTAAGACAAGTAGCAGCCAGCAGCAGC
CTCCGTCGCCGCCGCCAGCCGCTCTTTTTTGATCCCCGCCTAGAGCAAGC
AAGGCCTCCACACGGTTGCCAGCCCATTTCCCCTGATCCACTCGCAGCAG
CAGCCGCAGCACGTAGAGTAGCGCCAAGCCACCAAAATCAAGAGTCGCTT
TTCACGCCACTCTTCGTTTTGTGTCTTTGCCCTTCTTCTATTGCCTGCCT
CCGCCTCGTGTGCTTACCCACTCTAGATGGAACTACCTACCAGCCAGCAG
CAACCACCGTACCCCACTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGAAGAAGTCGCCGTCTGTCTTCTTCCCTCCTTGTTTTAGGCGCCGCGG
CCGCCTCGTCCCTTCTCCTCCTTCCCTCGACCACTCACGCCTTTACAGGA
AGCATGCTCGGCCTCCGTCGTGCCGCCATCTCCTCCTCCTCCCTCCTCTC
CTATTCCTCCCGCACCGGAGCCGGTGCTCTGACAGCCTTCCTCCGTCCCT
TTGCGTCTGCGCCTGCCGCGGCAAGGCAATCACCTTATCAGCAGCAGCAG
CAGCAGCAGCAGCGGGGCGGGCGTCCGTCATCCCTCAACTCATACCGAGG
GGGGGGGGTGGAAGGGGCCGTGGCTCGTACGGAGGAGGGGGAGGGCGCGG
GCGAGGACCGCAAGTGGACGATTTCAAGTCATTCGGGGAGGAGATGA

protein sequence of NO13G03130.1

>NO13G03130.1-protein ID=NO13G03130.1-protein|Name=NO13G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MELPTSQQQPPYPTSSSSSSSSSSSRRSRRLSSSLLVLGAAAASSLLLLP
STTHAFTGSMLGLRRAAISSSSLLSYSSRTGAGALTAFLRPFASAPAAAR
QSPYQQQQQQQQRGGRPSSLNSYRGGGVEGAVARTEEGEGAGEDRKWTIS
SHSGRR*

mRNA from alignment at chr13:900619..901865-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G03130.1 ID=NO13G03130.1|Name=NO13G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp|location=Sequence derived from alignment at chr13:900619..901865- (Nannochloropsis oceanica)
AAACGAACGTACTGGCCGAACAAAGAGCAACAGCATGTTGTTTACCTGGC
CATTTCTTGGGAACTGCACCACATAAGGGTGTGGGACAATGTGGCAGACG
CTGCATTTGTGAGTGGCTGGCCTAATTACTGCTCTCGACGACCTCCTCTT
CCCTCAGCCACACGCTTACCGCATCACAGCCTCCTGCCTCTCCGCTCGCC
TCTCGGATACTTATGCTGTCTTGTATGTGGGCCATGAAAGCACTTTACCA
ATGCCGCAGCCTTGCCTGATCATTTGCCCATTCTATTTTGCACAGCATCA
CGGTACTGATCATGGCACCATTCATCTGCTGGTACACTGCTTTGCATAGC
CAACTCCTGCGAGCCAACCACCATTACTTGTGAAGCGCTGCGCCCTGCCC
TTCGGGCGTGCGTGGTGTCGGGTGGATGGCCCTGCGATTGAAGCACCCTT
GCGCCAATGCACTATACACTACACACATTCACCCATCCCCCACCCTCACG
CTCATCACACACACAGTGCACGTTTAAGACAAGTAGCAGCCAGCAGCAGC
CTCCGTCGCCGCCGCCAGCCGCTCTTTTTTGATCCCCGCCTAGAGCAAGC
AAGGCCTCCACACGGTTGCCAGCCCATTTCCCCTGATCCACTCGCAGCAG
CAGCCGCAGCACGTAGAGTAGCGCCAAGCCACCAAAATCAAGAGTCGCTT
TTCACGCCACTCTTCGTTTTGTGTCTTTGCCCTTCTTCTATTGCCTGCCT
CCGCCTCGTGTGCTTACCCACTCTAGATGGAACTACCTACCAGCCAGCAG
CAACCACCGTACCCCACTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGAAGAAGTCGCCGTCTGTCTTCTTCCCTCCTTGTTTTAGGCGCCGCGG
CCGCCTCGTCCCTTCTCCTCCTTCCCTCGACCACTCACGCCTTTACAGGA
AGCATGCTCGGCCTCCGTCGTGCCGCCATCTCCTCCTCCTCCCTCCTCTC
CTATTCCTCCCGCACCGGAGCCGGTGCTCTGACAGCCTTCCTCCGTCCCT
TTGCGTCTGCGCCTGCCGCGGCAAGGCAATCACCTTATCAGCAGCAGCAG
CAGCAGCAGCAGCGGGGCGGGCGTCCGTCATCCCTCAACTCATACCGAGG
GGGGGGGGTGGAAGGGGCCGTGGCTCGTACGGAGGAGGGGGAGGGCGCGG
GCGAGGACCGCAAGTGGACGATTTCAAGTCATTCGGGGAGGAGATGA

Coding sequence (CDS) from alignment at chr13:900619..901865-

>NO13G03130.1 ID=NO13G03130.1|Name=NO13G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr13:900619..901865- (Nannochloropsis oceanica)
ATGGAACTACCTACCAGCCAGCAGCAACCACCGTACCCCACTAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAAGTCGCCGTCTGTCTTCTT
CCCTCCTTGTTTTAGGCGCCGCGGCCGCCTCGTCCCTTCTCCTCCTTCCC
TCGACCACTCACGCCTTTACAGGAAGCATGCTCGGCCTCCGTCGTGCCGC
CATCTCCTCCTCCTCCCTCCTCTCCTATTCCTCCCGCACCGGAGCCGGTG
CTCTGACAGCCTTCCTCCGTCCCTTTGCGTCTGCGCCTGCCGCGGCAAGG
CAATCACCTTATCAGCAGCAGCAGCAGCAGCAGCAGCGGGGCGGGCGTCC
GTCATCCCTCAACTCATACCGAGGGGGGGGGGTGGAAGGGGCCGTGGCTC
GTACGGAGGAGGGGGAGGGCGCGGGCGAGGACCGCAAGTGGACGATTTCA
AGTCATTCGGGGAGGAGATGA

Synonyms

Publications