Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr13 genome chr13:595112..601917 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02100.3 vs.
Match: EWM21884.1 (subtilisin inhibitor [Nannochloropsis gaditana])
HSP 1 Score: 124.0 bits (310), Expect = 4.500e-25
Identity = 79/153 (51.63%), Postives = 96/153 (62.75%), Query Frame = 0
Query: 20 LLLLASLSAIVVFASSSPSSATPPVSSSSFAATTYKTTDTSNITPIEDMADKHSSDSGKGTGAAFSAKDLGFKVPGTGSGPTDERIFNQPPRSWPELVGVDAEEAKARINSDMPGLNVIVLPKNAPTTRDFRLDRVRVFIEGDNTVARAPAQG 173
LLLL S++ A S+ P SSSS AT+ S P E M DK + KG G AF KDL FK+P DE ++PP+SWPELVG+D E+AK +I +DMPGLNVIVLPKN+PTTRD+RL+RVRVF+ DN VA P QG
Sbjct: 14 LLLLCSVAC----ADFPFPSSQGPSSSSSVPATS-----GSGGVPSESMTDKDN----KGGGGAFDPKDLAFKMPTQSK---DEIFSDKPPKSWPELVGMDGEDAKKQITADMPGLNVIVLPKNSPTTRDYRLNRVRVFVHEDNKVAVVPHQG 150
The following BLAST results are available for this feature:
BLAST of NO13G02100.3 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 4.50e-25 / Id = 51.63 Sequence EWM21884.1
Match Name E-value Identity Description
EWM21884.1 4.500e-25 51.63 subtilisin inhibitor [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO13G02100.3 ID=NO13G02100.3|Name=NO13G02100.3|organism=Nannochloropsis oceanica|type=mRNA|length=5729bp back to top protein sequence of NO13G02100.3
>NO13G02100.3-protein ID=NO13G02100.3-protein|Name=NO13G02100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp back to top mRNA from alignment at chr13:595112..601917+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02100.3 ID=NO13G02100.3|Name=NO13G02100.3|organism=Nannochloropsis oceanica|type=mRNA|length=6806bp|location=Sequence derived from alignment at chr13:595112..601917+ (Nannochloropsis oceanica)ATGCAAAGCCAAAGAAAATCGTGCGTGTTGTGGATGCCCT
CGAGCTGCAAGACATACCTTCTCCTCCTCGCCTCTCTCTCCGCCATCGTA
GTCTTTGCCTCGTCGTCACCCTCCAGCGCAACACCACCTGTATCGTCGTC
GTCTTTTGCAGCCACGACAT GTAAGAATGTGGGATGGGTGGGCGGGTTGA
GCAGGGGGCGGCGTTCTAGTGAGAACAAGATAAGCGCAAGAGGATGGGCG
GAGGAACGCGTTCCTTGAGGTGTCCCGTGCACTTGATTGCATACAAAGCA
GATAGACTGGGCAGCTTGTGTCAGGCTCGTCAGCCACATCCACCATCGTC
CCGCGTGTGCAGGAGCGCAGATGCGTGCCCGGGGGGCCTATTGAATGCCA
CGTGCTTCCTCAGTCGCGTCTCATCAACTCTCGCCTCGCCCCTCACAGAC
AAAACTACAGACACATCAAACATCACTCCCATCGAAGATATGGCAGACAA
GCACAGTAGTGATAGTGGCAAGGGTACTGGCGCTGCCTTTTCCGCGAAAG
ACCTAGGTTTCAAAGTGCCTGGGACTGGAAGCGGCCCGACAGACGAGCGG
ATTTTCAATCAACCACCAAGGAGCTGGCCTGAGCTTGTCG GTAAGGGTTC
GAACAAAATATATATGACTTTGGTCTGTATATTAAAGCTGCGCGTGGGAT
CATTTTATCCATTCCTCAATGGTTACCGACTCGAATTTGTCGCGCAATTG
TGAGCGCAGGAAGATAAAGGGAATTGAGAGGGGCGGAAAGAGATGTTGCT
GTTGGTGGTGATAACAAATAAGCCTGACTTTCGAATTGTCATTGCGAAAG
AGACTTCAATGACAGAAAAAAATGTCATAAAACAACAGGCCCACTAGAGT
GGTATGAAAAACTGGAAGAGAGCCTGATAGATGAGGAAGAGTGAGAAATG
GTGGCTCCATCTCAGAGGGAGGGCAAAAAGCCTAATGGACGCATCATATA
TTTCCACCCCTCTACAAGAACTTGCATATAACTGTATTCTTTCTCTCTAT
TCTTGACAGGCGTGGACGCAGAGGAAGCCAAGGCCCGCATCAATAGCGAT
ATGCCGGGCTTGAATGTGATAGTTCTTCCCAAG GTATGTGATGAAGTAAG
AGATAAAGCGAGTCAAATTCGGATCATTAAAATCTCTCCTGTCAACTCTT
GCAGAGAAATGTTGAGTCTCTTTACATGTGTGTAGGCATTGATTATGTTG
GCCCGCCTTTTTTGGGGCCAGTCTTTCTCTGGTGTACAAGTTTCAGTGTG
AGATTATTTTCTGCATCGCTACAATACTGGTCTGTATTGCGATTATGGCT
CGACCAATTTGCAGACAGTATGTCAGAAATCGTATGACTTGCTCAATAGC
ATTCAAAGCGCACTCACATTCTTCCCCTTGCTCTCTCCCTCTACACATCC
ATCTACCCAACCAAATACTATGAATACGTCCCTTTCTCTCCATTTCAATC
TTACACCCTCAAGAATGCTCCCACCACCCGTGATTTCCGATTGGACCGAG
TCCGTGTTTTCATTGAAGGAGACAATACGGTAGCCCGTGCCCCCGCACAA
GGCTAA back to top Coding sequence (CDS) from alignment at chr13:595112..601917+
>NO13G02100.3 ID=NO13G02100.3|Name=NO13G02100.3|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at chr13:595112..601917+ (Nannochloropsis oceanica) back to top