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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr13 | genome | chr13:228875..231496 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00680.1 vs.
Match: XP_003084312.1 (Methyltransferase domain [Ostreococcus tauri]; CAL58377.1 Methyltransferase domain [Ostreococcus tauri]) HSP 1 Score: 328.6 bits (841), Expect = 2.500e-86 Identity = 157/282 (55.67%), Postives = 203/282 (71.99%), Query Frame = 0
Query: 73 LDPADKWIMNLHRSSNANSTYNKSQGSQDYYLETIFAHIGETNRYFVEFGFNEKSYTSGGSGANTWDLHDKGWRGLLLDADHENPAINLRKHFLYSNNIASIFETYLVPKEPDYLSCDMDSHDLFVWKAILEAGYRPRLMSTEFNSNYPLNLTITEIDPSLKEHD-AVSEFRFKQCAWGASAGALKLIADQYGYVLVGRVRNLDLFWLRKDLLPNSWIIPEFSWFF-DNELGILHHNAQQSADIYNYLMDYAEYTRSGNLQAAMALAASTIKSARLDCFSGI 353
L+ D+WI +LH+ S + KSQG+QD Y E IFA IG TNRYFVEFGFN+ SYTSGGSGANTW+L+D GWRGLLLD EN INL H+L+ NI SI +TY VPKE D LSCDMDSHD+FV + IL AGYRPR+ +TE+NSNYPL IT IDP++ D + +F FK C+WGASA A +LIA+++GY L+GRV LDL WLR DL+ ++W +P F WFF D LG LHH Q S +I++YL+D+ ++G++Q A A + + ++ L CF+G+
Sbjct: 324 LNTKDRWIFDLHKLSTSKGP--KSQGAQDQYFEHIFAKIGTTNRYFVEFGFNQPSYTSGGSGANTWNLYDSGWRGLLLDGTRENAEINLHAHYLFEKNIGSILDTYNVPKELDLLSCDMDSHDIFVLRGILNAGYRPRVFTTEYNSNYPLEYAITLIDPTILGVDVSTYDFTFKGCSWGASASAFRLIAEKFGYTLIGRVSFLDLVWLRNDLIEDNWDVPPFEWFFRDAPLGKLHHFKQTSNEIFDYLVDFNVLEKTGSVQEAKEAAGAKLGNSGLACFNGL 603
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00680.1 ID=NO13G00680.1|Name=NO13G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2622bp
TCTCTCAGGAGAGCATTTGTTGAAACGAACGTTCTATAAGCATGTTTATG
GAGCATGCTTTCGCTTCAGACACTGCTGTCCACTTCTTTGAGACCGCGCT
GTTGACCTCGAGAATCTGCATAGATCTTTCCACCATGTGGGCGATGGTGC
AACGCGTCGTGAACGGGCCCATGTGGTGCTCGGCCGCACTCTCTGAACGG
GGCCCAGTCTGCCGTATGACACTCCTTCCTCTTTCAAAATCCCCATCAGC
ATTTGCGCCATAAGCATAGCTTATCACCATACTATGTCCAAGAGACACGG
GCCCAGGGGTGTCCCCTTTTGACCGCCACTAGTCAGAAGTGATGGCAGCG
TGAGGTACCAGAGAATAAATTAATATTTTTCTATGGATCATCTCACATAG
AGCCCTCGCCTGTCAACCAGCAACCGATACTGTTACTTGCATTATCTTGA
AGACATACACCGAGTTACCCTTTAACGAGCAGCCAACTCTGTTACTTACG
ATATTTGATTGGCGCTCACATGACCGGAAAGACTTGCGCCCTATGGCCTC
TGGCCACTACCAGACAAAAGTGATGGCGGCCATCTCCCTCCCACTTCTTG
TCTCGACCAGAAATATCCGTATACAGCTATGCCAAACCTTTAAGAACACA
TCGAGTCACATGGAACACACCATAGACACACGATGTCACCCTTTCCCCAA
ACTTTAGGACCATGTCTCCAGTCTGCCGAATCCTAACCCTGGCCCTGCAA
TGCTGGCAGACGCGCGTTTTGCACGCGCAGTAATTTTTTACGGGGTAGTG
GAAAACTTCCGTCATGTCCGTGCCGCAAATGACACACCCTTCGTGGCTCC
CCATATTTCAACCTGTGATGTGAATGAGGAGGAAGTCCTTAAGAGGACAT
CCATTTCGGCATCTTTCTTATTGTCTACGCCCACGACCTGTATCACCGTG
ATACAACTGCTGCGCACATCTTTTGGGATCCCTGGACGGAACGACAACCA
GGAGGCAGAAGACATCTGCGAATATCCGCATGCTGATAAATGTCGCATAG
CCACTCACTCACACACTCACCGACCATCTGACACCCATACCCACACCCAT
ACACCCTCATCTCCAGCACAAAAAGGATAAACGAGGATTTAATCGGTTTC
TCTTCTGCCTTGAATGCGGTTTCCATTTTAGAAGAATCTTTTTTCAACGA
GTGAAAATGCATCCTGAAATCTCAACTCACAAAGGAAAATTGGAGGTGAT
TAAGATAGACAGGCTCTTCGAAAGCTGCACTTTTTTGTACACTAGAGTTA
AAAACCAATGGGCCACACTTTGCCTTATATCTTTCTGCATTATCGCTGCG
GAGTGGATTTTAAGTTCTGGCGGCAGTAAGCCATTCATGAGAAAGCCTAG
TTTTGCTATGAGCGATGTGGCTCTCGATCCGGCCGATAAGTGGATTATGA
ATCTCCACAGATCATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGG
TCCCAAGATTATTACCTGGAAACTATTTTTGCACACATTGGGGAGACGAA
TAGGTATTTTGTCGAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCG
GCTCGGGTGCTAATACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTG
CTGTTGGATGCCGATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTT
CCTATACAGCAACAACATCGCCAGTATATTTGAAACCTACCTCGTACCAA
AAGAGCCGGACTACTTATCGTGTGACATGGACAGCCATGATCTCTTTGTT
TGGAAAGCAATCCTAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGA
ATTCAATTCAAATTACCCACTCAACCTGACGATTACAGAAATTGATCCCT
CTTTGAAGGAACACGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCC
TGGGGTGCCTCTGCAGGCGCGTTAAAACTCATTGCTGATCAATACGGATA
TGTTCTTGTGGGACGCGTCCGCAATCTGGACCTTTTCTGGTTACGAAAGG
ATCTACTTCCCAACTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGAC
AACGAATTGGGAATACTCCATCACAATGCGCAGCAGTCCGCGGATATTTA
CAACTACCTCATGGACTACGCTGAATATACCCGAAGCGGAAATTTGCAGG
CCGCTATGGCCTTAGCTGCGAGTACTATTAAGAGCGCCCGCTTGGACTGC
TTTAGTGGCATCGTCGGATCGTAAGTCGGCCGTCTCCATGTATAAATGAG
CCCCTACTACTACTGTCTGGCACTACTCTGTCAAGTTCCTCCGTCTTCAT
CTTTCTGAGTATTTGACATGAACAAATGTTGGCTTTCTATGCATGCTTTT
CTGGGATGTATTCGATCCGATAGCGAAACAAATCCATTAAAGAAAAACGA
AAAGATAAAAGTCTCTTTATGAAGCATTGAGGGTGATGCTCTGTCCAAGG
GCTTTCTCGCGAGGAATCGCGCCGGAACCGAGCTTTAAAAGTGCAGAAGT
CCCCCAAAATCGAGCTGTCCACGCAGAAACCATCGCTGAAGCGTTGATAC
CTCATGACTACATTGAGGGGGG back to topprotein sequence of NO13G00680.1 >NO13G00680.1-protein ID=NO13G00680.1-protein|Name=NO13G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MHPEISTHKGKLEVIKIDRLFESCTFLYTRVKNQWATLCLISFCIIAAEW
ILSSGGSKPFMRKPSFAMSDVALDPADKWIMNLHRSSNANSTYNKSQGSQ
DYYLETIFAHIGETNRYFVEFGFNEKSYTSGGSGANTWDLHDKGWRGLLL
DADHENPAINLRKHFLYSNNIASIFETYLVPKEPDYLSCDMDSHDLFVWK
AILEAGYRPRLMSTEFNSNYPLNLTITEIDPSLKEHDAVSEFRFKQCAWG
ASAGALKLIADQYGYVLVGRVRNLDLFWLRKDLLPNSWIIPEFSWFFDNE
LGILHHNAQQSADIYNYLMDYAEYTRSGNLQAAMALAASTIKSARLDCFS
GIVGS* back to topmRNA from alignment at chr13:228875..231496- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00680.1 ID=NO13G00680.1|Name=NO13G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2622bp|location=Sequence derived from alignment at chr13:228875..231496- (Nannochloropsis oceanica)
TCTCTCAGGAGAGCATTTGTTGAAACGAACGTTCTATAAGCATGTTTATG
GAGCATGCTTTCGCTTCAGACACTGCTGTCCACTTCTTTGAGACCGCGCT
GTTGACCTCGAGAATCTGCATAGATCTTTCCACCATGTGGGCGATGGTGC
AACGCGTCGTGAACGGGCCCATGTGGTGCTCGGCCGCACTCTCTGAACGG
GGCCCAGTCTGCCGTATGACACTCCTTCCTCTTTCAAAATCCCCATCAGC
ATTTGCGCCATAAGCATAGCTTATCACCATACTATGTCCAAGAGACACGG
GCCCAGGGGTGTCCCCTTTTGACCGCCACTAGTCAGAAGTGATGGCAGCG
TGAGGTACCAGAGAATAAATTAATATTTTTCTATGGATCATCTCACATAG
AGCCCTCGCCTGTCAACCAGCAACCGATACTGTTACTTGCATTATCTTGA
AGACATACACCGAGTTACCCTTTAACGAGCAGCCAACTCTGTTACTTACG
ATATTTGATTGGCGCTCACATGACCGGAAAGACTTGCGCCCTATGGCCTC
TGGCCACTACCAGACAAAAGTGATGGCGGCCATCTCCCTCCCACTTCTTG
TCTCGACCAGAAATATCCGTATACAGCTATGCCAAACCTTTAAGAACACA
TCGAGTCACATGGAACACACCATAGACACACGATGTCACCCTTTCCCCAA
ACTTTAGGACCATGTCTCCAGTCTGCCGAATCCTAACCCTGGCCCTGCAA
TGCTGGCAGACGCGCGTTTTGCACGCGCAGTAATTTTTTACGGGGTAGTG
GAAAACTTCCGTCATGTCCGTGCCGCAAATGACACACCCTTCGTGGCTCC
CCATATTTCAACCTGTGATGTGAATGAGGAGGAAGTCCTTAAGAGGACAT
CCATTTCGGCATCTTTCTTATTGTCTACGCCCACGACCTGTATCACCGTG
ATACAACTGCTGCGCACATCTTTTGGGATCCCTGGACGGAACGACAACCA
GGAGGCAGAAGACATCTGCGAATATCCGCATGCTGATAAATGTCGCATAG
CCACTCACTCACACACTCACCGACCATCTGACACCCATACCCACACCCAT
ACACCCTCATCTCCAGCACAAAAAGGATAAACGAGGATTTAATCGGTTTC
TCTTCTGCCTTGAATGCGGTTTCCATTTTAGAAGAATCTTTTTTCAACGA
GTGAAAATGCATCCTGAAATCTCAACTCACAAAGGAAAATTGGAGGTGAT
TAAGATAGACAGGCTCTTCGAAAGCTGCACTTTTTTGTACACTAGAGTTA
AAAACCAATGGGCCACACTTTGCCTTATATCTTTCTGCATTATCGCTGCG
GAGTGGATTTTAAGTTCTGGCGGCAGTAAGCCATTCATGAGAAAGCCTAG
TTTTGCTATGAGCGATGTGGCTCTCGATCCGGCCGATAAGTGGATTATGA
ATCTCCACAGATCATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGG
TCCCAAGATTATTACCTGGAAACTATTTTTGCACACATTGGGGAGACGAA
TAGGTATTTTGTCGAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCG
GCTCGGGTGCTAATACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTG
CTGTTGGATGCCGATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTT
CCTATACAGCAACAACATCGCCAGTATATTTGAAACCTACCTCGTACCAA
AAGAGCCGGACTACTTATCGTGTGACATGGACAGCCATGATCTCTTTGTT
TGGAAAGCAATCCTAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGA
ATTCAATTCAAATTACCCACTCAACCTGACGATTACAGAAATTGATCCCT
CTTTGAAGGAACACGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCC
TGGGGTGCCTCTGCAGGCGCGTTAAAACTCATTGCTGATCAATACGGATA
TGTTCTTGTGGGACGCGTCCGCAATCTGGACCTTTTCTGGTTACGAAAGG
ATCTACTTCCCAACTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGAC
AACGAATTGGGAATACTCCATCACAATGCGCAGCAGTCCGCGGATATTTA
CAACTACCTCATGGACTACGCTGAATATACCCGAAGCGGAAATTTGCAGG
CCGCTATGGCCTTAGCTGCGAGTACTATTAAGAGCGCCCGCTTGGACTGC
TTTAGTGGCATCGTCGGATCGTAAGTCGGCCGTCTCCATGTATAAATGAG
CCCCTACTACTACTGTCTGGCACTACTCTGTCAAGTTCCTCCGTCTTCAT
CTTTCTGAGTATTTGACATGAACAAATGTTGGCTTTCTATGCATGCTTTT
CTGGGATGTATTCGATCCGATAGCGAAACAAATCCATTAAAGAAAAACGA
AAAGATAAAAGTCTCTTTATGAAGCATTGAGGGTGATGCTCTGTCCAAGG
GCTTTCTCGCGAGGAATCGCGCCGGAACCGAGCTTTAAAAGTGCAGAAGT
CCCCCAAAATCGAGCTGTCCACGCAGAAACCATCGCTGAAGCGTTGATAC
CTCATGACTACATTGAGGGGGG back to topCoding sequence (CDS) from alignment at chr13:228875..231496- >NO13G00680.1 ID=NO13G00680.1|Name=NO13G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr13:228875..231496- (Nannochloropsis oceanica)
ATGCATCCTGAAATCTCAACTCACAAAGGAAAATTGGAGGTGATTAAGAT
AGACAGGCTCTTCGAAAGCTGCACTTTTTTGTACACTAGAGTTAAAAACC
AATGGGCCACACTTTGCCTTATATCTTTCTGCATTATCGCTGCGGAGTGG
ATTTTAAGTTCTGGCGGCAGTAAGCCATTCATGAGAAAGCCTAGTTTTGC
TATGAGCGATGTGGCTCTCGATCCGGCCGATAAGTGGATTATGAATCTCC
ACAGATCATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGGTCCCAA
GATTATTACCTGGAAACTATTTTTGCACACATTGGGGAGACGAATAGGTA
TTTTGTCGAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCGGCTCGG
GTGCTAATACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTGCTGTTG
GATGCCGATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTTCCTATA
CAGCAACAACATCGCCAGTATATTTGAAACCTACCTCGTACCAAAAGAGC
CGGACTACTTATCGTGTGACATGGACAGCCATGATCTCTTTGTTTGGAAA
GCAATCCTAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGAATTCAA
TTCAAATTACCCACTCAACCTGACGATTACAGAAATTGATCCCTCTTTGA
AGGAACACGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCCTGGGGT
GCCTCTGCAGGCGCGTTAAAACTCATTGCTGATCAATACGGATATGTTCT
TGTGGGACGCGTCCGCAATCTGGACCTTTTCTGGTTACGAAAGGATCTAC
TTCCCAACTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGACAACGAA
TTGGGAATACTCCATCACAATGCGCAGCAGTCCGCGGATATTTACAACTA
CCTCATGGACTACGCTGAATATACCCGAAGCGGAAATTTGCAGGCCGCTA
TGGCCTTAGCTGCGAGTACTATTAAGAGCGCCCGCTTGGACTGCTTTAGT
GGCATCGTCGGATCGTAA back to top
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