NO13G00640.1, NO13G00640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00640.1
Unique NameNO13G00640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1577
Alignment locationchr13:217816..219577 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:217816..219577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00640NO13G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00640.1NO13G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00640.1.cds1NO13G00640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00640.1.cds2NO13G00640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00640.1 ID=NO13G00640.1|Name=NO13G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1577bp
AACAGTCGCAGCCGCACGCCTCTTTGCCAGTGTCATAGGGCAGCAAACGA
TGACGGCCCCTGCCAATCCACCCGTTCTGACCGGCCAGTCCTCCAAGAAA
CCTAAGCACAAGCAACGGGCAGTCTCTCATCTTACTCCCGTGCATGGTAG
CAACCAGCAGAAGTCGCTGTTGCCTGTCCCACCGCCTTCCATCCCTATCA
CTGTCGCACCCAGGGTTTGCAAAGAAGAGGGGGGAAGGGGGGAAGAAGGG
GCAGGAGCAGGAGCAGAAGCAGTTGCAGATGCGCTGGCAGCGACACCTGT
GGCTGCTGCCGCCGTGCAGCAGCAGCCACAGCAGGACGTGGACTTGTTTG
ATATCACGAGCCATGTGCAGGCGCTGCGAGAGAATGCGAAGGATGTGGAG
CAGATGCTTATAGCCTCCATGTCCAAGCTCCAGAGCACGTACCAGTCCGA
AATGAGGGCCAAGGAAGAAGTCCTAGTTCTCCTCCGACGCTCCATCGAGG
AGAAGAAGCATAAGGTGGAAGAAGTCTTAGGAGCGATTCGGACCTTGTCT
CGGGCATTCGGTGATACTTATAATGGCTCTGCTGCAAATTTGTCAGTGCC
GGGCGGTGACGATGAGGGAGGAGGAGGAGGAGGAGCTGGAGGAGGAGGAG
ATGGGGATGGAGGACGGAAACGGGATCGAGACGGAGACAGAATGGAGACT
GGTGGCAGCCATGCCCGTCAGGGAAACCAGCAGAACCAACAGCAGTGTCC
CTCTTCGCGTTCTCTTCAACACCAGGTGGCGCACCAGCAACAACGACTAC
AACTTCAACAACAGCAACAGCAGCAGCCGGCTTCGACGGTGTCTGCTGCG
AGCTCTTCGGAAGTCTGGGATAAATATGCGGCGGTTAAGGAGGAGGAAGA
GGAAGAGGAAGAGGAGGAGGAGGCAGAGGGGAGAGAGGAGTTAATGGGAG
GGATCTGCTTGGGGGAAAGGGACAAGGGGAGGTTGCTACAATTTACGGAA
GAGGAGGAGGATAATGAAGAAATTGGTCTCATTCTGGGAGGTGCTGTCGC
TGGCGGTTGTAGCCGAAACGGTGCAATGCAGAAAGAGAAGGGGACAGGGA
AGAGCCAGCTTGATAAGGAAGAAGAGCAGCGGCAGGAGAATTAGGAGGAG
TAGATGGCGGTTGGTATGATGTGACAAAGGTGTGATGGAGAATGTGAAGA
GGAGCAGAGGGAGAGAGTGAACAGTGCAGGACGGGATGGATGACAAATGA
AGAGGAACAGTGGATGTTGAGATGAAAGGAAGAGAGGAAGGAGGAGTGGA
GGTGATTGTACGTTGCAGTCGGTAAAGAAAGTCGAACTGAGTGCGTGTAC
AAGTAAGATGGTGTGTATGTTTGTGTATATGGAGAAATGCAGGTGCCAAT
AAAGAATGTTCAGAAAGAATCGAAGGTAACGTTTCTAGATAGAGGCAACA
GGATGAAAGAAGCACGTGATGAGATACCAAGAAGACAAAAAGATAAGGCC
CTGGGGGCGGGGTGCAAGACCATGCGATGCACAACATTGAAGGAAAGAGA
AGACAAGCCCCTAAAAAAGAGTTTACA
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protein sequence of NO13G00640.1

>NO13G00640.1-protein ID=NO13G00640.1-protein|Name=NO13G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MTAPANPPVLTGQSSKKPKHKQRAVSHLTPVHGSNQQKSLLPVPPPSIPI
TVAPRVCKEEGGRGEEGAGAGAEAVADALAATPVAAAAVQQQPQQDVDLF
DITSHVQALRENAKDVEQMLIASMSKLQSTYQSEMRAKEEVLVLLRRSIE
EKKHKVEEVLGAIRTLSRAFGDTYNGSAANLSVPGGDDEGGGGGGAGGGG
DGDGGRKRDRDGDRMETGGSHARQGNQQNQQQCPSSRSLQHQVAHQQQRL
QLQQQQQQQPASTVSAASSSEVWDKYAAVKEEEEEEEEEEEAEGREELMG
GICLGERDKGRLLQFTEEEEDNEEIGLILGGAVAGGCSRNGAMQKEKGTG
KSQLDKEEEQRQEN*
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mRNA from alignment at chr13:217816..219577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00640.1 ID=NO13G00640.1|Name=NO13G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp|location=Sequence derived from alignment at chr13:217816..219577+ (Nannochloropsis oceanica)
AACAGTCGCAGCCGCACGCCTCTTTGCCAGTGTCATAGGGCAGCAAACGA
TGACGGCCCCTGCCAATCCACCCGTTCTGACCGGCCAGTCCTCCAAGAAA
CCTAAGCACAAGCAACGGGCAGTCTCTCATCTTACTCCCGTGCATGGTAG
CAACCAGCAGAAGTCGCTGTTGCCTGTCCCACCGCCTTCCATCCCTATCA
CTGTCGCACCCAGGGTTTGCAAAGAAGAGGGGGGAAGGGGGGAAGAAGGG
GCAGGAGCAGGAGCAGAAGCAGTTGCAGATGCGCTGGCAGCGACACCTGT
GGCTGCTGCCGCCGTGCAGCAGCAGCCACAGCAGGACGTGGACTTGTTTG
ATATCACGAGCCATGTGCAGGCGCTGCGAGAGAATGCGAAGGATGTGGAG
CAGATGCTTATAGCCTCCATGTCCAAGGTATGTTACAAAACTGTATTGAG
TCGACCACGTCTGACGTCCCCCTCCCCACTCGCTCTCGCTTTTCCTCCTT
GTCCCCTTCCTTCCATTCATCTCAGGGTCTTTACCACACCCCGTGCGTCA
ACGCTCACCTTTTTCCTTCCTTCCTTCCTTTCTTCCTCTCTCTCTCTCTT
CTCCCTTCACAGCTCCAGAGCACGTACCAGTCCGAAATGAGGGCCAAGGA
AGAAGTCCTAGTTCTCCTCCGACGCTCCATCGAGGAGAAGAAGCATAAGG
TGGAAGAAGTCTTAGGAGCGATTCGGACCTTGTCTCGGGCATTCGGTGAT
ACTTATAATGGCTCTGCTGCAAATTTGTCAGTGCCGGGCGGTGACGATGA
GGGAGGAGGAGGAGGAGGAGCTGGAGGAGGAGGAGATGGGGATGGAGGAC
GGAAACGGGATCGAGACGGAGACAGAATGGAGACTGGTGGCAGCCATGCC
CGTCAGGGAAACCAGCAGAACCAACAGCAGTGTCCCTCTTCGCGTTCTCT
TCAACACCAGGTGGCGCACCAGCAACAACGACTACAACTTCAACAACAGC
AACAGCAGCAGCCGGCTTCGACGGTGTCTGCTGCGAGCTCTTCGGAAGTC
TGGGATAAATATGCGGCGGTTAAGGAGGAGGAAGAGGAAGAGGAAGAGGA
GGAGGAGGCAGAGGGGAGAGAGGAGTTAATGGGAGGGATCTGCTTGGGGG
AAAGGGACAAGGGGAGGTTGCTACAATTTACGGAAGAGGAGGAGGATAAT
GAAGAAATTGGTCTCATTCTGGGAGGTGCTGTCGCTGGCGGTTGTAGCCG
AAACGGTGCAATGCAGAAAGAGAAGGGGACAGGGAAGAGCCAGCTTGATA
AGGAAGAAGAGCAGCGGCAGGAGAATTAGGAGGAGTAGATGGCGGTTGGT
ATGATGTGACAAAGGTGTGATGGAGAATGTGAAGAGGAGCAGAGGGAGAG
AGTGAACAGTGCAGGACGGGATGGATGACAAATGAAGAGGAACAGTGGAT
GTTGAGATGAAAGGAAGAGAGGAAGGAGGAGTGGAGGTGATTGTACGTTG
CAGTCGGTAAAGAAAGTCGAACTGAGTGCGTGTACAAGTAAGATGGTGTG
TATGTTTGTGTATATGGAGAAATGCAGGTGCCAATAAAGAATGTTCAGAA
AGAATCGAAGGTAACGTTTCTAGATAGAGGCAACAGGATGAAAGAAGCAC
GTGATGAGATACCAAGAAGACAAAAAGATAAGGCCCTGGGGGCGGGGTGC
AAGACCATGCGATGCACAACATTGAAGGAAAGAGAAGACAAGCCCCTAAA
AAAGAGTTTACA
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Coding sequence (CDS) from alignment at chr13:217816..219577+

>NO13G00640.1 ID=NO13G00640.1|Name=NO13G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr13:217816..219577+ (Nannochloropsis oceanica)
ATGACGGCCCCTGCCAATCCACCCGTTCTGACCGGCCAGTCCTCCAAGAA
ACCTAAGCACAAGCAACGGGCAGTCTCTCATCTTACTCCCGTGCATGGTA
GCAACCAGCAGAAGTCGCTGTTGCCTGTCCCACCGCCTTCCATCCCTATC
ACTGTCGCACCCAGGGTTTGCAAAGAAGAGGGGGGAAGGGGGGAAGAAGG
GGCAGGAGCAGGAGCAGAAGCAGTTGCAGATGCGCTGGCAGCGACACCTG
TGGCTGCTGCCGCCGTGCAGCAGCAGCCACAGCAGGACGTGGACTTGTTT
GATATCACGAGCCATGTGCAGGCGCTGCGAGAGAATGCGAAGGATGTGGA
GCAGATGCTTATAGCCTCCATGTCCAAGCTCCAGAGCACGTACCAGTCCG
AAATGAGGGCCAAGGAAGAAGTCCTAGTTCTCCTCCGACGCTCCATCGAG
GAGAAGAAGCATAAGGTGGAAGAAGTCTTAGGAGCGATTCGGACCTTGTC
TCGGGCATTCGGTGATACTTATAATGGCTCTGCTGCAAATTTGTCAGTGC
CGGGCGGTGACGATGAGGGAGGAGGAGGAGGAGGAGCTGGAGGAGGAGGA
GATGGGGATGGAGGACGGAAACGGGATCGAGACGGAGACAGAATGGAGAC
TGGTGGCAGCCATGCCCGTCAGGGAAACCAGCAGAACCAACAGCAGTGTC
CCTCTTCGCGTTCTCTTCAACACCAGGTGGCGCACCAGCAACAACGACTA
CAACTTCAACAACAGCAACAGCAGCAGCCGGCTTCGACGGTGTCTGCTGC
GAGCTCTTCGGAAGTCTGGGATAAATATGCGGCGGTTAAGGAGGAGGAAG
AGGAAGAGGAAGAGGAGGAGGAGGCAGAGGGGAGAGAGGAGTTAATGGGA
GGGATCTGCTTGGGGGAAAGGGACAAGGGGAGGTTGCTACAATTTACGGA
AGAGGAGGAGGATAATGAAGAAATTGGTCTCATTCTGGGAGGTGCTGTCG
CTGGCGGTTGTAGCCGAAACGGTGCAATGCAGAAAGAGAAGGGGACAGGG
AAGAGCCAGCTTGATAAGGAAGAAGAGCAGCGGCAGGAGAATTAG
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Synonyms
Publications