Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr13 genome chr13:29529..35986 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00100.1 vs.
Match: EWM22854.1 (sporangia induced mitogen-activated protein [Nannochloropsis gaditana])
HSP 1 Score: 880.9 bits (2275), Expect = 1.800e-252
Identity = 436/510 (85.49%), Postives = 466/510 (91.37%), Query Frame = 0
Query: 1 MEGYLQKQGYVFSSRRYFILTGTALLCYASRGDQSEVRETFALTSDTQVVEMKTKEKLKFRLKNEGFSWTLAADDDNEEEGRKWVEAIARAVAHLASFSADGYRGGEGESTAGHTHTPARKVVVIEGTEFVIDPRYEVTRRLGNGAYGVVVAAKDTITNTPVAIKKCFNIFQSLSDAKKIAREVRLLRQMDHPNITRIITVIPPLTPAFDEVYIVSELMDIDMHNLMYLSREKITPDHVQFFVYQVLCGIKYMHALNIIHRDLKPSNLLINANCDLKICDFGLARGIHLDSPAQDKECDLTAADAAAPEKPKDLLSEYVVTRWYRAPEILLNPRNYSKPVDIWAVGTIFGELLARKPMFPAHNYDHLIRLQTRTLGSPSEENLKWVTREKARTFMRSLPQYPRRDFKSLYPEASAPALDLLEKLLQWDPAKRPSAAEALSHPYFDDIRDADFEQEPSIVIDWGDLETMRTTKPNLQRYLIEDMVTMNPDSAALLKTVSLESGFGGAAGAT 511
MEGYLQKQG+VFSSRRYF+LT T LLCYA++ D+SEVR++F L DTQVVE+K K+KLK RLK+EG +WTL+AD+D+E EGR+W +A+A AVA LAS S GG GE T H PARKVVVIEGTEFVIDPRYEVTRRLGNGAYGVVVAAKDT+T VAIKKCFNIFQSLSDAKKIAREVRLLRQMDHPNITRI TVIPPL+ FDEVYIVSELMDIDMHNLMYLSREKITPDHVQFF+YQVLCGIKYMHALNIIHRDLKPSNLLINANCDLKICDFGLARGI + PAQDKECDLTAADAAAPEKPKDLLSEYVVTRWYRAPEILLNPRNYSKPVDIWAVGTIFGELLARKPMFPAHNYDHLIRLQTRTLGSPSEENLKWVTREKARTFMRSLPQYPRRDFKSLYPEAS PALDLLEK+LQWDPAKRP+AAEALSHPYFDDIRDADFEQE ++IDWGDLETMRTTK NLQRYLI+DMV+MNP+S+ALLK V+ ES G AAGAT
Sbjct: 1 MEGYLQKQGFVFSSRRYFVLTNTGLLCYANKEDRSEVRDSFPLAPDTQVVEIKIKDKLKLRLKSEGLTWTLSADEDDEAEGRRWADALATAVARLASLSKGHPPGGHGEGTRELAHNPARKVVVIEGTEFVIDPRYEVTRRLGNGAYGVVVAAKDTVTGKAVAIKKCFNIFQSLSDAKKIAREVRLLRQMDHPNITRITTVIPPLSATFDEVYIVSELMDIDMHNLMYLSREKITPDHVQFFIYQVLCGIKYMHALNIIHRDLKPSNLLINANCDLKICDFGLARGIQSNGPAQDKECDLTAADAAAPEKPKDLLSEYVVTRWYRAPEILLNPRNYSKPVDIWAVGTIFGELLARKPMFPAHNYDHLIRLQTRTLGSPSEENLKWVTREKARTFMRSLPQYPRRDFKSLYPEASGPALDLLEKILQWDPAKRPTAAEALSHPYFDDIRDADFEQESDLIIDWGDLETMRTTKLNLQRYLIQDMVSMNPESSALLKMVAHES-TGKAAGAT 509
The following BLAST results are available for this feature:
BLAST of NO13G00100.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 Expect = 1.80e-252 / Id = 85.49 Sequence EWM22854.1
Match Name E-value Identity Description
EWM22854.1 1.800e-252 85.49 sporangia induced mitogen-activated protein [Nanno... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO13G00100.1 ID=NO13G00100.1|Name=NO13G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=4483bp back to top protein sequence of NO13G00100.1
>NO13G00100.1-protein ID=NO13G00100.1-protein|Name=NO13G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp back to top mRNA from alignment at chr13:29529..35986+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00100.1 ID=NO13G00100.1|Name=NO13G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=6458bp|location=Sequence derived from alignment at chr13:29529..35986+ (Nannochloropsis oceanica)ATGGAAGGTTACTTACAAAAGCAAGG GTAAGTCATC
GTAACTCCCTTGTATTAATGTCGCTGTCATGTCGTCGTTTGTATTTTCTC
GAGGTCTAGACGGGCCCATCGACCCCACACTCTCGTCACTCAAGTTTGTT
CTTGCCCCTGGCCTACTCTGTGCCTTGCGTGCAGTAGGCTAAGCACCACT
CTCTCTCCTTTTCCCGAAATTCATAGGAGGTATATGCATTTCCATCCTTG
CATGTACCAAAAATCTCTTTACATCTGCTCTTATATATCGCCCCTACGAG
CGAACCTCCGCATGAGTAGCAGACAGTGTAATCTCCCGCCTGTGCCTGCA
TCTCGGTTTGACAACCGCCTTGACGCTGTACCAATCACCCCTTCCCTCAT
CTCTATCCTGCCTTCCATTTCCCCCTCTTCAGATATGTCTTCTCTTCTCG
CCGGTACTTCATCCTGACCGGCACGGCACTATTGTGCTACGCGTCGAGGG
GCGACCAGAGTGAGGTGCGAGAGACGTTCGCTCTCACCTCCGACACGCAA
GTGGTGGAGATGAAGACGAAAG GTAGGGACGGGAGGGAAAGAAGGAAGAG
GAGGGAGGGAAAAGAATTCCATCAGCAGGCACAGAGAGCAGCGAGGCTGA
TATACTTCACCCTTAGCATTACATACACGGACCCACATCCTGCTCTCCCT
CTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCTCCTTGCAGAG
AAGCTCAAGTTCCGTCTCAAGAATGAAGGATTCTCCTGGACCCTGGCGGC
CGACGATGATAATGAGGAGGAAGGTCGAAAGTGGGTGGAAGCCATAGCAA
GAGCTGTAGCTCACTTGGCCTCCTTCTCGGCCGACGGCTACAGGGGAGGA
GAGGGGGAATCCACGGCCGGACATACACATACACCGGCACGGAAGGTGGT
TGTGATTGAG GTGGGTCATCGTCTGAGACAGGAAGGATGGAAAAGAACCG
TGACGGCACGCTTCCGCCCATTCCCCTCTCTTGTTGCTGCCCCTCTGCCG
GAAGCGCCGAGTCATTCATCTCCCTTCCTCCCTCCATACCCTTCCCTCCC
TCCATCCCTCCCTCCCTCACTCACCTCGAGCAGGGCACTGAGTTCGTGAT
CGACCCTCGGTATGAGGTGACCCGCCGACTAGGAAATGGGGCGTATGGCG
TGGTGGTGGCTGCCAAGGACACGATCACGAACACACCA GTAAGTTCAGAG
GGGGGGCGGGGGAAGGAGGGAGGGAAGGACAATTAGGCAGGCGATAATGT
ACCAGTCAGGTGGCGGGGCGTAGGGCATGACCAAGATTGCCAATCGTAAG
ATCATGAGTAGACCGGGAGGGTGGAACGGAGGGTCGGCATCGCCACTCGC
GTTTAGATCGTCACGTGCCTTGTCATAACCCGCCCTCCCTCCTTACCTTC
CTTCCTTTCTTCCATTCACCTTCCCCAAAGGTGGCCATCAAGAAGTGTTT
CAATATATTCCAGTCCCTCTCGGATGCCAAGAAGATCGCTCGGGAGGTCC
GACTGCTGCGGCAGATGGACCATCCTAACATTACCCGGATCATCACG GTA
GGGAGGGAGGGAGGGAGGGAGGGAGGGCCGGTGGATACAGATATGGTAAA
AGTTGGGCCCATTTTCCCTTTCTCACCATTCACACACATTGCCCCTCCCT
CGCTCCTCGCTTGCACCGTAGGTCATCCCGCCCCTGACGCCGGCCTTTGA
CGAGGTCTACATCGTGTCGGAGCTGATGGACATTGACATGCACAATCTCA
TGTACCTCTCCCGGGAGAAGATCACGCCCGACCACGTCCAATTTTTCGTC
TACCAG GTAAAGGCCATCTCTCCTCCTTCTCATTCTCCCTCCCTCCCTCC
CTCCCATCCTCCTTTTCTACTGCTTTTTCCGACGCCTTGGGTTCGCTCCG
AACCTCTCTTCTCTCCTCTCTTCCCTCCCTCGTCTATCCTGCAGGTCCTT
TGCGGCATCAAGTACATGCACGCCCTCAACATCATTCATCGTGATCTCAA
G GTATTAGCCACTCCTCTTTCCTTCCATTTCTATCCTTCCCTCCCTTCTT
CGCTCCCTCCCCTCCTCCCGCTCCCGATTTGACCGAGCTCCCTCCTCCCC
TCCCTTCCTCCCTCCCTCCCTCCTAGCCGTCCAACCTCCTGATCAACGCC
AACTGCGACCTGAAGATATGTGACTTTGGCCTAGCCCGCGGCATTCACTT
GGATAGCCCCGCCCAG GTTCGGCATGGAGGGAGGAATGCAGGGAATGAGG
AAAGAGTTGAGGGAAAAGTATGGGGGAAGCCACCACAAGACTATATATAT
ATAGTATTGAATTGAATTGAAACTGATGACCGAAACTTTGCACTTACAAC
AACATCGGGTTCATGCATGGCAGGTAGCCTCTAAACGGTCGCCTCTTTTT
CAACCACTTCAACTTCCTTTCCTCCTCCCTACTTACTAGGACAAGGAATG
CGATCTTACGGCCGCAGATGCTGCTGCTCCGGAAAAGCCCAAGGACTTAC
TGAGCGAGTACGTTGTCACCCGCTGGTACCGGGCACCTGAGATTCTCCTG
AACCCGCGCAATTACTCCAAGCCGGTGGATATTTGG GTACGATGCATGAG
GGAGGGATAGGAGGAAAAAGAAAGAGGGAGTGGGCTATATAAATTGCGCA
CCATTGGATGGTCGCGACCAGTCTAACTCAAAAGGCAACTTGCGGGCCTG
TTCTCCTCTTCTCCTCATTTCGACCCTCCATTAATCCTCTCTTTCTAAAA
CAGGCGGTGGGCACCATCTTTGGCGAGCTCCTGGCGCGCAAGCCCATGTT
TCCCGCGCACAACTACGACCACCTGATCCGCCTCCAGACCCGGACACTCG
GGAGTCCGTCGGAGGAGAACTTGAAATGGGTCACACGTGAGAAGGCGCGC
ACTTTCATGCGCTCCTTGCCGCAGTACCCGCGTCGAGACTTCAAGAG GTA
CGAGTTGTCAATTTAGTTATGGTAGTGCTTCCTCTCCTCTCTGTCCTCAC
TCTTTCTCGCACTTGAATCTTGTATTCAGACGCTCATGAATTTATTCCTC
ACACTAAAATAGTCTCTATCCAGAAGCCTCTGCACCTGCTTTGGATTTGT
TGGAGAAACTCTTGCAATGGGACCCTGCCAAGCGCCCTAGTGCTGCTGAG
GCTCTGTCGCATCCTTACTTCGATGACATCCGGGACGCGGACTTTGAGCA
G GTATGGGCTGAGAAGAGGGGCTCAGACGGAGGCCCAACACAAATTTAAA
GGGAATGGAGGCTTTGAGCTTTAAACTCACGACTAATCAAAAACAAAACA
GGAACCCAGCATCGTCATTGACTGGGGAGACTTAGAAACGATGCGCACTA
CCAAGCCGAATCTTCAACGATACCTAATCGAAGACATGGTGACGATGAAC
CCTGATTCAGCGGCTTTGTTGAAGACAGTTTCATTGGAGAGTGGCTTCGG
GGGCGCAGCTGGGGCTACCTAA back to top Coding sequence (CDS) from alignment at chr13:29529..35986+
>NO13G00100.1 ID=NO13G00100.1|Name=NO13G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=1533bp|location=Sequence derived from alignment at chr13:29529..35986+ (Nannochloropsis oceanica) back to top